RNA id: XM_021603692.2


Basic Information

Item Value
RNA id XM_021603692.2
length 3950
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110524231
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60944007 ~ 60951642 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTCGAGAGCATCAAATCCATGATGCATTGTGGGTAAATTGTGATTGACTGGATGATCTACAAATATTAATGAGTGGGTATTTTTGATGCaaagtgatttgtagatcagtcagtcagctgtCGCTTGCAATGTCGAACAAACTCATTGACTTCTCCAATCCCAAACCCCAGCATGTGTCTGCTTGGTCTGTTTCGCAAGCGTTCCCGGTAGTCTcgcgatgttgcgcctctgggtttagaaactctgtgctaCTGTTGTCTGACAGCTAGACGAGAACTGgcatagctagctagatatctgAAAGGAAATAAAGCAATTCTCAACATTGATAGTTTCTATAGaggactattttatacattgacAACCCCACATATCAGCTGTTAAAATGAAAAAAGAAGGAACGCGCTGTTGGGCCTAACTGCTCTGAGCTGAGTCTGTTCCTCATCAGTCCCTTGACACCTGACCCCCTGGACGGTGTAACCATGACGACAGGGGAGTGTTGCCACCTCCCGGGCTCTCTGTGTGACTGCACTGGCAACGCTGCCCTGTCCAAAAGCGTGGAGGAGTCGGATAACTGCAGATCACAGTATGTCACCCAGGTCACAGCTAAAGATGGACGGCTGCTCTCCACTGTCATCAAACCCGTGAGCACACAGAGCGATGGGCCAATCTGCCGGATCTGCCATGAGGGGGCCAACAGCGAGGGCCTCCTGTCCCCCTGCGACTGCACAGGGACTCTGGGCACAGTGCACAAGAGCTGCCTGGAGAAGTGGCTCTCCTCCTCCAACACCAGTTACTGTGAGCTGTGCCACACAGAGTTCACAATTGAACGGAAGCCCAGGTCCCTCACAGAGTGGATGCGGGACCCGGGCCCTCGGAACGAGAAGCGCACGTTGTTCTGTGACATGCTGTGCTTCCTGTTCATCACGCCCCTGGCAGCCATCTCTGGCTGGCTGTGTCTGAGGGGAGCTCAGGACCACCTGCACTTCAACAGCAGACTGGAGGCCGTGGGCCTCATCGCCCTCACCATCGCCCTCTTCACCATTTACGTCCTCTGGACTCTGGTATCATTCCGCTACCACTGTCAGCTCTACTCTGAGTGGAGACGAACCAACCAGAAAGTACGCCTGCTCCTTCCAGACGCGAAGGGTGGGCATTCTAGCCAGCATTCCTTGCTCTCCACGAAGCTGCTGAAAAAGACAGCTGACGAGACCATAGTATGAGTTCTCCACCTCCGACTATAAAAGTGAGGCATGGATCGTTGATGCTGATCTAAGGCGATTCATCCGGCAGTTGATTCCCTAACCACTGAGTGCAGAAGTGAGAAGTTTTGACTCCGGTTCACCAGCCACAGGCTATTCCACTGGGGATTATATATGCTCATGCCATTTTAATACGCAATTCAGTTGACTCCCTTCAATTTACCTCCCATCTGTTTTCCCCTTGGTGTGAGCAGGAATGTTGTTCGTGAAGATGGAGATTGTGCAATAAAACACAGTGGATGCGGTTGTTCTCGCAGTATGTGAGGAGACTGCTCCCAACACGCACAGTTTTGCATGCATGTGATGCACTGTTTattttttgttgggggggggggggtattgttttttgtttttttacattggggGATTGAAAGATCGGTTGGTCGAGCTTCCTTTGATTTAGTGTTGCTAGTTTGTATTTTGGTCAAGGTTTCCTCCCTGGGAGTATAGAGGTCTCATACTATCAGCACTTAATCAAAAAAAATGTGCAAATAGATCTATGTACAGTAGGTCTAGATGCCACTGATGATGAAAAGCCTTTATGGAAATGTGTATTCCACAAACATGAAGTTCAAACTTTTTGTGGTTTAGGGAAAGTAAGGCTTACCTTTCCAGTATCGCATGGTCAAGGTCAGACTTACAGGAAATCAACAGTACATTGCTCTCCTATGACGAGATTCCAATGAAAAGCTTTTAGTTGGTGTTTTTTTGTATTGGTGTGTTTTCTTTTTTGTGTAGTCACGTAACAATAGCTAGTAATCACATCCAGAAAGAGCGtagattggttggttgatgttaCTTTGGGTTTTGTGGAAGTTCCTATTCCCTCCGATATGCAGTTGACCAGACTCTGACGCCTTACACTCATACGTACCTACAGACTGTACCTTGACAGTAGAACCCAGTGTCTGGTTCTAGACTGTTATGGGTTTTGTTGTTCTCCATCTACCACAGCTTTAAAACATATGAGGTGACCtctggatgagagggagagatgtgcaAAAACAGCATAGGTCTTTGTGTGGGTCTTGTGCATTTGATTTCTTCCCTGTACACTGTATGGTTCTTTCAGACGTCCCTCTGTCTTAGCGACGCTTCATTTCCACATATTTCTATATGTATTGTTAATCATAGTGTCCTTGGTTGACCATACAAGTATTGACCCTGAATCTTAAAAGCTGTTAACAGGCCTAAAGAGAGGAGGATTAATGCAAATATCCTCCTCAGTAGGGGAAGCTCACGTTATGGTGCACAGAAGCCAAAAACCTAGGCCTAGATCTGTCACTCTTTTGTATTTTCTATGATAGTTGAATTTGTTTCAACCCCTTCATAGCAATCATGCTCCTATCTATTGCTCATCTGTAGGGGCAGGTTAAACTCTTCCGGGTTGATCACCTGAAGGGCTTTGCGGTGGAACAGCTATGCACTGGAAAGGTTTATTTATGCAGCTGTAAGAACCCTGGTTGTGGGAGTGGCATTCTGAAAATCAGATTAAACTTGGGGGGGAAAATGGTGATCTACAGTAAACAAAGTAGGAAGTCATCCTCCGCATGACACTAGTCAGCCCAGTTCCGTGTAGTGTTCTGTTGGGAGACCCATTCTGAAAAtagaaatgtttttgttgttgtgaagtggCGATTGTCACTCTGAAGGAATCCTCATCTGGTGTTAAAGGGTAGATAACATTGTGCAATAGTAATACTAGAGCTTagtatgaggttattttcctgcgtGTGTGGTGGGGTGGAACCGTGTTGAAGATCTTTCAGGGTGGAGAGAGTTCTTATCTGTGTCGTCAGCGATGGGCCACTGCCCGTGTCACATGCTGTCTCTGATTGGTGAGTTCGCCTCCAGCTGACGTGTTGGGAGCTATGGAGACTTTGCAATGTAGGGTGTAGTTACAGCAAGTGTGCAATTTGATCACTTTACAATGCAATTCTTACCTATAACCTTAACAATACGTAATGAAAGCAGAAATATAATGCAGAAGTAAGTGCATGTGAAGGATCATAGCAGTTGGCTCACTTGTGCAGGCTGAGAAGGTCACGATAGGATGTTGGATTTTTCTATGCGAGTCTTGAGTTGCCTACAATATGCTCAGAGACATTAAACTCCAGTGTTATAACCGCTAATTCAAACAGTTCCTTCTCTCCAAAGAAGCATTGATTCTTGTGTTTTATACCAGTATATCAAACGGCACTTTCACAAAACTATAATTGAAATGAATACAGTGTGGTTGTTTATATCATCTCCCAATACAGACTTTGAAAGGGATTTAAAAGTGTTACTGATATTGTACAATTTTCCCAGTTTCTGGTGTTCGGATATTGCTCCTCTGATTTCGTTTTTGATTGGAAGATGAAACCAAGGGTccagggcattgtcatgctcgTTTGTAAAAGGAGCAACATACCAGCTTTGTAGacttgtttttgttaatgttttaATCTCGTGTTCATTTTACCACAGTTTTTAATATATTCATGTGTATCATTCGTAATTTTGTTTCAATTATTCATTAAGCACAGGATTTGTATCAATCTTACACTATAGTATTTcaaaacatgtttatgttgtgcAATGTAAAAAAGAAAGATGTCTTCACCAAATATATGTTGGCGCTTGCAATCAGCCAAGAAAAGTGTGCAAAGCTAATTTAATAATGAAGCAACAGAATGGATAAACA

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006897 endocytosis biological_process
GO:0016567 protein ubiquitination biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0010008 endosome membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10657 MARCH2; E3 ubiquitin-protein ligase MARCH2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479724 lncRNA downstream 6786 60937000 ~ 60937221 (-) True G423394
TU479721 lncRNA downstream 10959 60932799 ~ 60933048 (-) True G423391
TU479714 lncRNA downstream 42252 60901516 ~ 60901755 (-) True G423384
TU479664 lncRNA downstream 60041 60861527 ~ 60883966 (-) True LOC110524228
TU479690 lncRNA downstream 88084 60855260 ~ 60855923 (-) True G423360
TU479730 lncRNA upstream 14867 60966509 ~ 60967764 (-) True LOC110524237
TU479767 lncRNA upstream 79629 61031271 ~ 61093488 (-) True G423435
TU479834 lncRNA upstream 294916 61246558 ~ 61246791 (-) True G423495
TU479836 lncRNA upstream 296926 61248568 ~ 61248887 (-) True G423497
TU479849 lncRNA upstream 312249 61263891 ~ 61265340 (-) True G423509
XM_021603687.2 mRNA downstream 13344 60915224 ~ 60930663 (-) True LOC110524230
XM_021603688.2 mRNA downstream 13893 60915224 ~ 60930114 (-) False LOC110524230
XM_021603686.2 mRNA downstream 13910 60915017 ~ 60930097 (-) False LOC110524230
XM_036978004.1 mRNA downstream 29726 60902398 ~ 60914281 (-) True timm44
XM_021603685.2 mRNA downstream 29730 60902398 ~ 60914277 (-) False timm44
XM_021603696.2 mRNA upstream 1263 60952905 ~ 60966146 (-) True LOC110524236
XM_021603697.2 mRNA upstream 14758 60966400 ~ 60970977 (-) False LOC110524237
XM_036978007.1 mRNA upstream 14758 60966400 ~ 60970979 (-) False LOC110524237
XM_036978008.1 mRNA upstream 14758 60966400 ~ 60970979 (-) False LOC110524237
XM_036978009.1 mRNA upstream 21501 60973143 ~ 61053401 (-) False pip5k1ca
TU478587 other downstream 842951 60100765 ~ 60101056 (-) True G422347
TU477230 other downstream 1805750 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 1907708 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 2529864 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 2829947 58112387 ~ 58114060 (-) True G420193
TU479791 other upstream 107352 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 665228 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 698325 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 707391 61659033 ~ 61659585 (-) True G424502
TU481096 other upstream 936556 61888198 ~ 61927422 (-) False G424649

Expression Profile