RNA id: XM_036978008.1


Basic Information

Item Value
RNA id XM_036978008.1
length 2791
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC110524237
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60966400 ~ 60970979 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatatttatttaattttagaataaggccataACTGTGCGggcctgggcaactccagtcctcgtgTCAGACTTTTGCCCCAGTCACAGCtaatgatcttcagtttagaatgcaattagtttaaatcagatgtgtttgctagggatgggggaaaagtctatcaggccctcgaggactggaattaCCCGGGTCtgcgtaacgtaacaaaatgtggaaaaagtgaaggagcctgaatactttccgaacgcactgtaCATATAGAACCAAACGGAAGTAAACTGATTAAACGGAATCAAACTGGGAGCGACGTACCTGAATTTgttcaatagaaactctcgttttccGTTTGGAATTAActgtttctgttgcaaaacgtttagcAACAGACCCCAGCAGCCCTGCGTTCCTGAAGGGCGCTGTGTAAATCACGTGGGTCGCGCGTCAGCCATTCTACGTTTTCATTCCACTACATTCGGATCTACAAGAGGGCGGGAATGGTCGAATGGAATTATAGAATCATACGTCACGTTTCCTTGGAGAACAACATACATTTTGAAAAGTAGTGATATTTTAGTATCACTAGCGCATTTTGGaacttttttattttgtaaaaatgtggCTAATGTAGTCTAGCGAGCACATAATTTGTCTAACAATGACAATTGGAAGTATTCTATTTTAATCAAGCTATAGGGTTATTCACCCATTTTTGGCATGATGATGGACAACGGAGACTTCACTAACACGCTCCACACATTTGAGGACCTGCCTTGCAAGGATGACGTGCAGAGTTACCTGATCTCGTCCGACCGAACATTCCTACTCTCTGAGAACGATGCCCTGAAAATGGAGCTCAGAGATGCCAAGTCTCGACATGAGACTGTGATGAAGAGCCTGCacctttcccttcactctgctgAACAAGAAAACAAGAGCTCCAAGCTCACACTCCAGCAGAACCTCAGACTTTCTGAGGGCAAGGTAAACTCCATGGAGCAGAAACTCAAGGAGTTTGAAGGACAGGTCCTGTCCTTGCAGCACAATCTCATGGCCTCTAATGAAAGGACTCAGAGTCTGCAGAAAACCCTCCGGTTCTCTGACAATAGGCTCCAGTCCCTTCAGCAGGACCTGGACGAGTCTGAGAAGAGAGGCCAAAGCCTGCAGAAAAGCCTTGGGGACTCccaagagaggaaccagactctgcAACATAACCTGGCTTCCTTTGAGAAGAACAACCAGTGCCTTAGCCAGAACCTTAGCGCTTCAGAGAAAAAGGTTGACTTCCTTCAGCACAGTAACTGGAAGTTTGAGGAGAGGGTGAAGTCTCTGCAGCAGACCCTCGGCTCTTCTGAGGGAAAGGTCTCTCTCCTGCAGCAGAGTCTGAAGTCTTCAGAGGAGAAGGTCTTATCCCTCCAACATGACCATTGGGCCTTGGATGAGAGAGCCCAGTCCCTGCAGCAGAGCCTCAACTCCTCAGAGGAAAAGCTCCAGTCGACACAACATTGGCTCAAGGCTACAGATGAGAAAGCCAAAGCCCTGAAGGAAGCTCTCAGATCTTCAGAGGAGAAGACCCAGTCCTTACAGGAGGCCCTGGGGGTCAGTGAGAGCTGGATCAGGGCAACCAAGGCCCAGCAGCAGTCTCTGGAGAAATGCaaagaggagctggaggagaggatcaagGGTTTGATGCAGACTCTCCGGGCCACTGAGGGGGAGCACCACAGCACAGTGCAGGACCTGCAGGTGGGTCTTCAGAGTGCCAGGGAGAAGGTGGAGATTCTGCAGGATGCACTGAACAGGACTGAGTCTGGGCATGTGAAGGAGGTGGGGCAGCTTCAAGAGAAACTGAACAGAGCTGCAAAAAAATTGTCTTCAAGAGAGCAGGCGCTGCACAGCCAGATTGCTGCCTTGAACACTAAATTGCTGGAGGAGCAGTCAAAGGCAAGCAAGGACCTTGAAAGATCCATTAGATATGAGAAAGAGCTGCAAGACACTGTCAAGATTCTCAGGAAGAAGCTGAGAACTCAAACTGAGGAGAAGGGGTTTGCTCTGAATAGCCTGAGAATGCGTCAGAAGGACCTGGCGGATGTACAGCGCCACCTACAGGCAGACCTGCTGAGGTGCAGCCAGGTCTGTGGCAAGGAGAAGGGACCGCAGTACTTAGCCCCCCGCAAGGGTGGCCTGAAGGAGGAGTTCTTCCACCTGAGAACCAGCCTGCACTCCGTCCTGGAGAAGGAGGCTGGGAGAGACGACCCAGGGAGGCAAGACTGGGTGCAGGTGTTAGACGAGATCAAGGACTGGGAGAAAAGGGCAGAAAAACAGGTGGACAGTTTAGATTCTCTGCAGAGTTCCCAGCTGCTGGAAGAAGGAGGGGATGAAAGGTACCAATATAGAGCAGGAGCATGGAAAAGTGGAGCACCACCCTCCATCCGTTCCCCTTCTGCTGTGACGATTTCCCAGAGGAACCTCTCTACGAGGCCTGCTTCTCCATATCCCTATGGGCAATATCTAGGGCAGGAGAAGAGGCTTGGGTCTAGCTCCCTCCGTGGCTTGAATGATTCTGAAGGCATGCAGCATTTACTAACAATCCAAAAAAGACTGAAGAACCTCCAGTCAGTTGAATTCCAGAGGAATATCAAGGGTTTACTCCGGACCTCATAGCACCAGCAGCGAGACCCTTTTGGACCATTGAATTACTTTACAACTGAGGGAAACCCCATTTTAAAATACCAGACAATTTGAGAATTGTTAAAATAATCTGAATTCATGGCAAATAAATCATTGGTTCTTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479724 lncRNA downstream 29179 60937000 ~ 60937221 (-) True G423394
TU479721 lncRNA downstream 33352 60932799 ~ 60933048 (-) True G423391
TU479714 lncRNA downstream 64645 60901516 ~ 60901755 (-) True G423384
TU479664 lncRNA downstream 82434 60861527 ~ 60883966 (-) True LOC110524228
TU479690 lncRNA downstream 110477 60855260 ~ 60855923 (-) True G423360
TU479767 lncRNA upstream 60292 61031271 ~ 61093488 (-) True G423435
TU479834 lncRNA upstream 275579 61246558 ~ 61246791 (-) True G423495
TU479836 lncRNA upstream 277589 61248568 ~ 61248887 (-) True G423497
TU479849 lncRNA upstream 292912 61263891 ~ 61265340 (-) True G423509
TU479850 lncRNA upstream 294831 61265810 ~ 61266048 (-) True G423510
XM_021603696.2 mRNA downstream 254 60952905 ~ 60966146 (-) True LOC110524236
XM_021603691.2 mRNA downstream 14758 60944007 ~ 60951642 (-) False LOC110524231
XM_021603692.2 mRNA downstream 14758 60944007 ~ 60951642 (-) True LOC110524231
XM_021603687.2 mRNA downstream 35737 60915224 ~ 60930663 (-) True LOC110524230
XM_021603688.2 mRNA downstream 36286 60915224 ~ 60930114 (-) False LOC110524230
XM_036978009.1 mRNA upstream 2164 60973143 ~ 61053401 (-) False pip5k1ca
XM_036978010.1 mRNA upstream 2164 60973143 ~ 61053401 (-) False pip5k1ca
XM_036978011.1 mRNA upstream 2164 60973143 ~ 61053401 (-) True pip5k1ca
XR_005051826.1 mRNA upstream 87970 61058949 ~ 61075725 (-) False LOC110524239
XR_002473554.2 mRNA upstream 87970 61058949 ~ 61081864 (-) False LOC110524239
TU478587 other downstream 865344 60100765 ~ 60101056 (-) True G422347
TU477230 other downstream 1828143 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 1930101 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 2552257 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 2852340 58112387 ~ 58114060 (-) True G420193
TU479791 other upstream 88015 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 645891 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 678988 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 688054 61659033 ~ 61659585 (-) True G424502
TU481096 other upstream 917219 61888198 ~ 61927422 (-) False G424649

Expression Profile