RNA id: TU479730


Basic Information

Item Value
RNA id TU479730
length 475
lncRNA type sense_over
GC content 0.52
exon number 4
gene id LOC110524237
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60966400 ~ 60970979 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGCCTGCACTCCGTCCTGGAGAAGGAGGCTGGGAGAGACGACCCAGGGAGGCAAGACTGGGTGCAGGTGTTAGACGAGATCAAGGACTGGGAGAAAAGGGCAGAAAAACAGGTGGACAGTTTAGATTCTCTGCAGAGTTCCCAGCTGCTGGAAGAAGGAGGGGATGAAAGGTACCAATATAGAGCAGGAGCATGGAAAAGTGGAGCACCACCCTCCATCCGTTCCCCTTCTGCTGTGACGATTTCCCAGAGGAACCTCTCTACGAGGCCTGCTTCTCCATATCCCTATGGGCAATATCTAGGGCAGGAGAAGAGGCTTGGGTCTAGCTCCCTCCGTGGCTTGAATGATTCTGAAGGCATGCAGCATTTACTAACAATCCAAAAAAGACTGAAGAACCTCCAGTCAGTTGAATTCCAGAGGAATATCAAGGGTTTACTCCGGACCTCATAGCACCAGCAGCGAGACCCTTTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479724 lncRNA downstream 29288 60937000 ~ 60937221 (-) True G423394
TU479721 lncRNA downstream 33461 60932799 ~ 60933048 (-) True G423391
TU479714 lncRNA downstream 64754 60901516 ~ 60901755 (-) True G423384
TU479664 lncRNA downstream 82543 60861527 ~ 60883966 (-) True LOC110524228
TU479690 lncRNA downstream 110586 60855260 ~ 60855923 (-) True G423360
TU479767 lncRNA upstream 63507 61031271 ~ 61093488 (-) True G423435
TU479834 lncRNA upstream 278794 61246558 ~ 61246791 (-) True G423495
TU479836 lncRNA upstream 280804 61248568 ~ 61248887 (-) True G423497
TU479849 lncRNA upstream 296127 61263891 ~ 61265340 (-) True G423509
TU479850 lncRNA upstream 298046 61265810 ~ 61266048 (-) True G423510
XM_021603696.2 mRNA downstream 363 60952905 ~ 60966146 (-) True LOC110524236
XM_021603691.2 mRNA downstream 14867 60944007 ~ 60951642 (-) False LOC110524231
XM_021603692.2 mRNA downstream 14867 60944007 ~ 60951642 (-) True LOC110524231
XM_021603687.2 mRNA downstream 35846 60915224 ~ 60930663 (-) True LOC110524230
XM_021603688.2 mRNA downstream 36395 60915224 ~ 60930114 (-) False LOC110524230
XM_036978009.1 mRNA upstream 5379 60973143 ~ 61053401 (-) False pip5k1ca
XM_036978010.1 mRNA upstream 5379 60973143 ~ 61053401 (-) False pip5k1ca
XM_036978011.1 mRNA upstream 5379 60973143 ~ 61053401 (-) True pip5k1ca
XR_005051826.1 mRNA upstream 91185 61058949 ~ 61075725 (-) False LOC110524239
XR_002473554.2 mRNA upstream 91185 61058949 ~ 61081864 (-) False LOC110524239
TU478587 other downstream 865453 60100765 ~ 60101056 (-) True G422347
TU477230 other downstream 1828252 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 1930210 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 2552366 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 2852449 58112387 ~ 58114060 (-) True G420193
TU479791 other upstream 91230 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 649106 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 682203 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 691269 61659033 ~ 61659585 (-) True G424502
TU481096 other upstream 920434 61888198 ~ 61927422 (-) False G424649

Expression Profile