RNA id: XM_036978009.1


Basic Information

Item Value
RNA id XM_036978009.1
length 5741
RNA type mRNA
GC content 0.45
exon number 18
gene id pip5k1ca
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60973143 ~ 61053401 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAAAATCAGTCTGAGGCAGACGGAAAAGGGTAAACCCGTGTCTACAGCAGCAAGTGCAGTCGAACTGAGAGGATTTGTGCCGCCGACGCGCTGATAACCACCGCACAGATGCCTGGCCCTAGGCCATAACGGATATCACCCGAAATTTATTTTTTCATATCATCGTATGGTTTAGCTGTAGGACGTCGAATAGCAACCGTTTGGTTTCGCCGAGTCGCGCCATCGCTGTTGGTCTTTCATTTGGAGGGCTCGCCCTTTCTCCGGGAGTCTGAATGGAAGCAGCAGCCGAGGGAGCAGTTGGGCTGTCAGAGGCGAGACCGTTATCCGGGGCTACAGCATCAGAGGATGCGGACACTGTCATTGGAATTAGCTACGGAAGGGACAGTGACATGGactaTTCTGCTAGAAAAGCACACATCACAGAGCtgcctggtgtctcaggtctaccAGGCCAGGGGAAGAGGATGGGCCACAGGGGAGTGGACGCGTCCGGAGAGACCACCTACAAGAAGacCACGTCCTCCGCCCTGAAAGGTGCTATCCAGCTGGGCATCGGCTACACGGTGGGCAACCTGAGCTCCAAGCCTGAGAGAGACGTCCTCATGCAGGACTTCTATGTGGTGGAGAGCATCTTCTTCCCCAGTGAAGGCAGCAACCTGACTCCAGCCCACCACTTCCCAGACTTCCGCTTCAAGACGTATGCTCCCGTGGCCTTCCGCTACTTCAGGGAGCTCTTTGGGATCAGGCCTGATGACTACCTGTACTCCCTGTGTAACGAGCCCCTGATTGAGTTGTCCAACCCCGGGGCCAGTGGCTCTGTGTTCTACCTGACCAAGGACGATGAGTTCATCATCAAGACCGTCATGCATAAGGAGGCAGAGTTTCTGCAGAAGCTGCTGCCTGGATACTACATGAACCTCAACCAGAACCCTCGCACCCTGCTTCCCAAGTTCTTCGGCCTGTACTGCATCCAATCTGGCGGTAAGAACATCCGCATGGTGGTCATGAACAATGTTCTACCGCGCGCCGTCCGCATGCACCTCAAGTTTGACCTGAAGGGCTCCACGTATAAACGCTGTGCCTCcaagaaggagagacagaaagccAAGCCCACCTTCAAAGACCTGGACTTCATGCAGGACCTGCAGGATGGCCTGATGCTGGACCAGGATATGTACAGCGCTCTGGTCAAGACCCTGCAGAGAGACTGTTTGGTGCTGGAGAGCTTTAAGATTATGGACTACAGCTTGCTGCTGGGGGTCCATAACATCGACCAGGCAGAGCGGGAGCagcagatggagggaggagagaaggatgagaagagGCCCGTGGCCCAGAAGGCCCTCTACTCCACCGCCATGGAGTCTATCCAGGGAGGGGCCGCCTGCGGGGAGTCTATCGAAACAGACGACACgatgGGAGGCATCCCAGCAGTCAATGGGAAAGGAGAGCGTCTACTCCTCTACATCGGACTCATAGACATCCTGCAATCCTACAGGCTAATAAAGAAGCTGGAGCACACATGGAAGGCTATGGTTCATGATGGGgacaccGTATCAGTCCACCGTCCTGGCTTCTATGCAGACAGGTTCTTCAAATTTATGAGCAGCACTGTGTTTAAGAAGAGCTCATCCTTGAAGTCTTCTCCCATTAAGAAGGGCCGTGTGGGCCTGACGGTGACTAAGTACACTGGCCCCGGGGCCGCCTGGTCAGCCAGCCAGCTGCCCTCTGAGAGAGACGACAACATCTACGACCTGAGAGGAGCACGCAGCTTCCCCACGCTGGAGGACGAGGggCGACCAGACCTCCTCCCCTGCACCCCTCCGTCATTTGAGGAGGCAACCACAGCCTCCATCGCCACCAcgctctcctccaccacctctctgtcCATCCCAGAGAGGTCTCCCTCAGACGCTGGAGCAGAGCACCCCCGCTACAGGTACCAGAACAACAGCTCTGAGAGAAGGAGGCACACCCAGTCTGTCAGCCATGACGGGAGGACTCAGGAGGAGGTGCATGAGGAGGAGCAGCAGACCATCacggtggaggtggaggtgaagaGACACGACAGCGAGCCCACCATCACGGCCCCACAGCCCTCTCCAGAGACCAGTGAGTTACCAGAATTAGCCTCTGCTGCTGCCTCTCCCCCAGCCCCTGGGGCCCCTGCTGAAGCCTCATCTGAGACCCCCGGCCCAGGGGCCACTGTCAGTCCCAAGGTTGTGGTTGTGGAGGCTGAGCGGGACCGCCGGGGCAGCACAGTGTCTGGGTCCGGATGCACCAGCCAAGCCTCACAGGATGACGAGGATGACGTGCCAATCAcagacatctactttCCCCCTGAGGACAAGACCTGGGTGTACTCCCCTCTGCACTACGGCAGTGAGTCTCAGACCTTGCCGgatggggaaggggaggagagcgagacaAGCTGAGAGGATGATTCAGTGGAGAGAGGAGCCATCAGACTGATCCCCGGGCCTCTGATTGGCAGGCAGCGGAAGCATTCCAATCCAGAACTGTATTTTAAACCATggatacaaaaacaaaacagactAAATACTGTGAGGAAACCCCCTCGACATCCCGTAGTCACAGTGGTGATGATACTGTATGATCGATTCCCCTCCTTTCAACCCACCCCAACCCCAAATTGCCATACCAGAAGAAATGCAGGAACTCAAATTGCTAGGCTACACATCTAGCATGCCCCATAAAAACATGGGCATTGAGGCAACTCTGCTAATCCTCTCACATTCCCAAATGTCGATACAGTCAAATGGTCACATGTATTTCATTGACATCATGTTAatttatattgttatttttcttAGTTTATTATTGTTTTTTAAATCTTTTTTATTTGTGCACTTTTTTCAGACATGTTTTAGTactgtgaatatatttagttatGTTGTGTGCTTCAAATGTAGCTCTAGCAGCAATATCAACGTTGTTTTGTAGCTCTAGCAGCAATCTTAAAGTCGCTATCGAAGTGGTACTTTACCACTATGTTGAATGGTACTTTACCACTATGTTGAATGGTATTTTACCACTATGTTGAATGGTACTTTACCACTATGTTGAATGGTATTTTACCACTATGTTGAATGGTACTTTACCATTGGAGAGGGAACACTTTATTTCCAATAGATGAAAAATGATCTATAGAATGTGTTTCAGAAAACATGACTTGGTAAATCTCATAAGCCTAATGTATTATTTTACAGGTTTGTTTATTCgttgttatgtatttattttgtcaTTTCTATCACAGTATTGCTACAGGCTTCTAGCCTCAAAACCAGATCATTGCAACACTAAATAAGGTTGGGTATTGTCAATCATTTCAAAATCCTACATCATTACAATGTCTTCCAGAATCGCCCAACTTTCAGAGAAATGTAAACAAAACATTTTCTAAGCATAATGATTCATTGAGCTGTGTTAATGTCATGAAATACCAATATTTCAGCAGTCAAAACTTGACTCTGAATGTTAGCTCTGCTGGAGGGGATGTAGGCTAATGGATTTGATTACTTAGGCCAAAACACTCACAGTATCACGTATGTCCAGAATTAATTAATACTTCTGTTATTTAGTAATAGTTCATCTAAGAGGGATTTCACGCTGCTCTTAGACAGCACTTTTATGGATCAACCATCATCCGATGTGAAAGTGAGGTCTTCATCACAATCATCTGGTATAGGATTAGTGTTATAGTATTTATGTGAATTCCATGTTTTAAGGTTTAAGTTGTGTTTCAATATGTTTTTATTCCTTTTCTGTTTCACACTTGGCTGTTTAAGTTAGTTGGTGTGTTTGTATGTCTGTGCGGGACGGAAGGCGTCAATGTCAAAACTTGTAAAATTCTGATCATTCTATCATAATGTGCAGTGGCCAGTTGTAATCAGTTGCTGTTGTCCATGTCATCAAGAGACCATAGCAGCAGTACGTTGTACAGTACAGGTGTAGTCTTAGTTTTAATTGCCTTATTGAGAAATTAAAACGTATCATATTGATGTTTTTTTCTTAGTAGTGctgttgtatttattattttcaaGTCCTTTTTTTCAATACTGTAGTTGTGAGCCAGAAAATGTGTATATACAattataaatacatatataaagattataaatatattttccatttgAATTGGagaatattatttttatttgattacattttttgctgCTGGCAAGAAATGATTAAGAGCTACACATGATTTACTGTACCATGTTCTTCAAGGTGTTGACACGATGCAGCTCGATTTATGGTTTATAAAtcacagctgtttttttttttttgtatgatATCCGTTACTGAAGAGTTGTCAGTTTTACTGTACCAGTTTAGTGTACATGTTTTCAAATCACAGTGTGCCCTCCTTTACAGAGACATAGCATGGTTTAAAAATGAATATGCATATCAGAaatatgtatttatgtatatCTGTGTATATTCATCTATTTATACTTGAGGATAAATAGAtggctgtatgtctgtgtgtgtttggactCTTACGATGAGAATTAATATAAAATAAAGCAGTTCTATGTCTATGATATAGTGTATTTGtccatgcttccaaagttgtctGGTGACTTCCATGTCTATATTGCTGATGTTTGCAAGCAAGGGAATTCCCTCCATGTGTCTCTCTTGTGCTACTGTTCAGCGCATGCTGTGAAAAACACAATTGTGCAGTGCTTGATTTTTGTGTGGCCTTTTCCCCCCTATTCTGTAAGAAGGGTTACAGAAGATACATTTTAAGAGAAGCATATTGACCAGCCTAGTATAGAATTCAGTATTTTCAACTGGTGAGAATAGCAACATGATGTTCAAGGCACGCTACCCAAGAATATCTTTCTTTTGATTTATGCCATCTTATCTGAAGCAATACTGGTGAATGAGGAAGGTATAAAGAAAATGTTTCATAACACTACTATGATTGGTCCTCATCAAAACAGAAATGCTTGAGTCTACCAGTCAGTTGTCATCTGAGCTAATTTATTATGGTGGGCGTGGCCCACAAGGAGATCATACTTACTGGACTGTTTACACTTTACAGCTTTTTGAAAAGTAGTACTGCtataacaatacaatacaacagagGGAAACTGTTCAAATGTGTTATGCAATCAATCATGTTTTTTTATTATATCAAATATGAGGTCCTTAGGAAATATTTTGACATTGGTCCATAATTTCCCTGTTCTAACAAAATGTCATGCATGCTCTCAAACACTATTTGCACTGTTACCTGCCCATATATTGTTACAGCTATGACCGGAAGTGACTTAGcgggttaggagaacttacacagcaggttaggagaattaacatagcaggttggGAGAATTAGGCTAACGTTATTAAGGGTTAGGGCTTTggaaaatgctctcctaacctgctacgaaaatcaCTTCCGGGTGTAGCTGTATCAAAGTGGCGTGAAAAGGGTGTCTCATATTGTGGCTACATGATCTTGGTTttgattgtttttgtatttttgttaGTATTTTGCTTGAATGTTTTACATAGAGAAAATATGCCCTGTGAAAGAGCCCTCTCATTAAATCATTGAGCTATATCAGAGTGAAGTGACATTAAAATGTATTGTCAACCGAATTCAAATGTCAAAGAGCAGGGATGAAATTCAATTGTACAACCTTCTCTTAATTTATGTCAATCAAAAGGTGGGTGAAAAAAATAAAGTTCCAAAATGAATGCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479730 lncRNA downstream 5379 60966509 ~ 60967764 (-) True LOC110524237
TU479724 lncRNA downstream 35922 60937000 ~ 60937221 (-) True G423394
TU479721 lncRNA downstream 40095 60932799 ~ 60933048 (-) True G423391
TU479714 lncRNA downstream 71388 60901516 ~ 60901755 (-) True G423384
TU479664 lncRNA downstream 89177 60861527 ~ 60883966 (-) True LOC110524228
TU479834 lncRNA upstream 193157 61246558 ~ 61246791 (-) True G423495
TU479836 lncRNA upstream 195167 61248568 ~ 61248887 (-) True G423497
TU479849 lncRNA upstream 210490 61263891 ~ 61265340 (-) True G423509
TU479850 lncRNA upstream 212409 61265810 ~ 61266048 (-) True G423510
TU479877 lncRNA upstream 230162 61283563 ~ 61285664 (-) True G423534
XM_036978007.1 mRNA downstream 2164 60966400 ~ 60970979 (-) False LOC110524237
XM_036978008.1 mRNA downstream 2164 60966400 ~ 60970979 (-) False LOC110524237
XM_021603697.2 mRNA downstream 2166 60966400 ~ 60970977 (-) False LOC110524237
XM_021603696.2 mRNA downstream 6997 60952905 ~ 60966146 (-) True LOC110524236
XM_021603691.2 mRNA downstream 21501 60944007 ~ 60951642 (-) False LOC110524231
XR_005051826.1 mRNA upstream 5548 61058949 ~ 61075725 (-) False LOC110524239
XR_002473554.2 mRNA upstream 5548 61058949 ~ 61081864 (-) False LOC110524239
XM_021603699.2 mRNA upstream 29237 61082638 ~ 61095399 (-) False arhgap45b
XM_021603700.2 mRNA upstream 29237 61082638 ~ 61095399 (-) False arhgap45b
XM_021603701.2 mRNA upstream 29237 61082638 ~ 61096386 (-) True arhgap45b
TU478587 other downstream 872087 60100765 ~ 60101056 (-) True G422347
TU477230 other downstream 1834886 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 1936844 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 2559000 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 2859083 58112387 ~ 58114060 (-) True G420193
TU479791 other upstream 5593 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 563469 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 596566 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 605632 61659033 ~ 61659585 (-) True G424502
TU481096 other upstream 834797 61888198 ~ 61927422 (-) False G424649

Expression Profile