Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_036978012.1 |
| length | 288 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 5 |
| gene id | LOC118964633 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 61077504 ~ 61081007 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006351 | transcription, DNA-templated | biological_process |
| GO:0005665 | RNA polymerase II, core complex | cellular_component |
| GO:0005666 | RNA polymerase III complex | cellular_component |
| GO:0005736 | RNA polymerase I complex | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0001054 | RNA polymerase I activity | molecular_function |
| GO:0001055 | RNA polymerase II activity | molecular_function |
| GO:0001056 | RNA polymerase III activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU479170 | lncRNA | upstream | 62558 | 61013149 ~ 61014946 (+) | True | G422886 |
| TU479141 | lncRNA | upstream | 89244 | 60978012 ~ 60988260 (+) | True | G422858 |
| TU479144 | lncRNA | upstream | 105320 | 60971957 ~ 60972184 (+) | True | G422861 |
| TU479143 | lncRNA | upstream | 105601 | 60971637 ~ 60971903 (+) | True | G422860 |
| TU479129 | lncRNA | upstream | 107849 | 60969394 ~ 60969655 (+) | True | G422856 |
| TU479249 | lncRNA | downstream | 25209 | 61106216 ~ 61106942 (+) | True | G422951 |
| TU479279 | lncRNA | downstream | 80190 | 61161197 ~ 61191465 (+) | True | G422978 |
| TU479885 | lncRNA | downstream | 208767 | 61289774 ~ 61290244 (+) | True | G423541 |
| TU479899 | lncRNA | downstream | 218633 | 61299640 ~ 61345067 (+) | False | G423548 |
| TU479895 | lncRNA | downstream | 218671 | 61299678 ~ 61305129 (+) | True | G423548 |
| XM_021603693.2 | mRNA | upstream | 135122 | 60939330 ~ 60942382 (+) | True | LOC110524234 |
| XM_036978001.1 | mRNA | upstream | 216133 | 60770757 ~ 60861371 (+) | False | LOC110524227 |
| XM_036978002.1 | mRNA | upstream | 216133 | 60770757 ~ 60861371 (+) | False | LOC110524227 |
| XM_036978000.1 | mRNA | upstream | 218966 | 60770756 ~ 60858538 (+) | False | LOC110524227 |
| XM_021603683.2 | mRNA | upstream | 381600 | 60694220 ~ 60695904 (+) | False | LOC110524226 |
| XM_021603715.2 | mRNA | downstream | 167565 | 61248572 ~ 61265206 (+) | True | tm6sf2 |
| XM_036978014.1 | mRNA | downstream | 186208 | 61267215 ~ 61285666 (+) | True | hapln4 |
| XM_021603719.2 | mRNA | downstream | 509596 | 61590603 ~ 61599332 (+) | True | nr2c2ap |
| XM_021603721.2 | mRNA | downstream | 556097 | 61637104 ~ 61655108 (+) | False | LOC110524248 |
| XM_021603722.2 | mRNA | downstream | 556097 | 61637104 ~ 61655108 (+) | False | LOC110524248 |
| TU478964 | other | upstream | 381599 | 60694257 ~ 60695905 (+) | True | LOC110524226 |
| TU476694 | other | upstream | 2133287 | 58942728 ~ 58944217 (+) | True | G420634 |
| TU476101 | other | upstream | 2660728 | 58413123 ~ 58416776 (+) | False | G420117 |
| TU475377 | other | upstream | 3177856 | 57884380 ~ 57899648 (+) | True | G419452 |
| TU475029 | other | upstream | 3710167 | 57365364 ~ 57367337 (+) | True | LOC110524119 |
| TU480287 | other | downstream | 640530 | 61721537 ~ 61722024 (+) | True | G423922 |
| TU480458 | other | downstream | 1024516 | 62105523 ~ 62105872 (+) | True | G424079 |
| TU480579 | other | downstream | 1202145 | 62283152 ~ 62306937 (+) | False | LOC110524265 |
| TU481721 | other | downstream | 1964083 | 63045090 ~ 63051530 (+) | True | G425224 |
| TU482675 | other | downstream | 2595407 | 63676414 ~ 63684239 (+) | True | nfil3-4 |
