RNA id: XM_021603700.2


Basic Information

Item Value
RNA id XM_021603700.2
length 4447
RNA type mRNA
GC content 0.53
exon number 22
gene id arhgap45b
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61082638 ~ 61096386 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACAGATTTCCTATACTGTCTGTCCGCTGCTGAGAAGCTAGGGGAGTTGGGGGACAGCATGACAGATGTCAAACTTCAGTAGATTGTTTAGACCTGACCTCAATTAAATTGACTTCACTTATCGTAAGTTATGGACCAGCAATGACATATTTAGTGGGGTGTTTTGAAGGCTACAGTAAGCCAGTATTGGTTCGTCACCTGCAAGATGAGTCTAGTTTAAAAAGTGACTCCTGCTAAAGATGATGGGAAAACAATAGGGACAGAGACCATGCTGAAACGTGGTAGCAAGAATAGTTACAACCCATACTCCACGGGCCAGAGAGTTAAGAGAGAGGAGGCTAAAGCCAAGAACAAATTGGACAAACAACCCAATAGACCCAACGTCTGGCTCAAACAGCTGTCTATTCTCCAGGAGCAGCCTCGTCGTGATGCTATCGACACAACCCCTTCCTCAACctcatcctcctccaccctcttcccCATTCCCGGTGCCCCATCGGACTCCTCCGTGTCCTGCCCTGGCACCCCAAGTGCCCAGCATAGCAAGCTGGTGGGGGTGGGCTGCCCGACCCCAGGGGCCACCATGAAGAGGCCCACCGGCCTCAGCCGCCATGCCAGCGCCGCGGGGTTCCCTATCCACTCATGGGTGTTCACCAAGGGCCAGGGAAAGGGGGCTatcacccccaccaccccccaaGACAGCTCAGAGAGCATGGCCATCGAGGTGGAGGACATCCCCTCTCTGTTAAGTAATGTGGCCCGCTTTGCTGAGGCCGTAGAGAAGTTGAAGGACGTTGTATTGGGGGAAGacaaGCAGGAGAACCGTCGCCCTCTGGCCCATGAGTGCCTGGGAGAGGTCCTGAGGGTCCTACGACAGGTCATCAGCACCTACCCTCTCCTCAACACTGTGGAGACCCTTACTGCTGCAGGCAAACTCATATCTAAGGTTAAAGGATTTCACTATGAGACTTGTAATGACACAGAAAAGAAGGACTTTGAGAAGGCCATTGAAACCATTGCAGTTGCTTTTAGTAGCAGtGTGTCAGAGCTGCTGATGGGGGAGGTGGACAGCAGTACCCTACTGTCCCTGCTGCCAACAGAGAAGAGCAGGtCTATGGAGAACCTGTACGGGGTGTCGGGTCATGGGCTAGAGGGAGCTCAGATGAGGAGTGACCTGCAGGACTTTGGCCGGGCCGAGGAGGTGGACATCATGCTGCAACGTAGTGAAGGGGGAGTGGACTCTGCTCTGGCCTACGCTAAGACCATCTCTAAATACATGAAGGACCTGATGAGCTACGTGGAGAAGAGGACCTCACTGGAGGTGGAGTTTGCCAAGGGCTTACAAAGACTGTACCAGTCCAGCAAGCACAGCATCACACATCCCCACATGCCCTTCTACTCCATCTACTCTCTGGCTCTGGAGCAGGACTTGGAGCAGAGCAGTGGGATGCAGCAGGCCGCCACCACACTGCACAACCAGACCTTCCTACAGCCTCTGATGCAGCGTAAACACGAGCATGAGAAGAAACGCAAGGAGGTCAAGGAACAGTGGTACCGTGCCAAGAGGAAACTGATGGAATGTGAGTCTAACCTGCGAAAGGCCAAGCATGCCTACATGGCTCGCTGTGAGGAGCACGACAAGGCCAAAGCAGCTGCTAGCAGAGCcgcagaggaggatggaggaggctCTACCACCAAGTCTCTGGGCAAAAAGTTACGAGTGGAGGAAGACGCTCGCAACAAGGCTGAAGAGGCAGAGGCCACCTACAGGACATGTATAGCAGACGCCACCACCCAGCAGCAGGAGCTGGAACACGTCAAGGTCAATGTGCTCCGACTGCTGCAGGAGGTCATCAAACAGAGTGACCAGACACTGCGCTCGgcCACCATCTCGTACTACCAGATAATGCACATGCAGACGGTGGTGTTGCCGGTCCACTACCAGACTCTGTGTGAGAGCAGTAAGCTGTATGACCCGGGACAGCAGTACGCTGCCCACGTCAGAGACCTGCAGCTCACTGAGGAGCCTGAGGTCACCTACCAGTTTGAGCCCTACACTGCCACTGCAGCCTCCACACAGCATCCAGCTCGACCCCTTAATGACAGCTTCAACACAGACCAGCAGAGCAGCTCTGAGGGTCAACCCAGCACCGGAGAGACCACGACAGGGGAGGACCTCAGCGCTGAAAACGCCAGAAAGAGACAAGGCCACAAATCGTGGGGTTCTACAGTGAGTGATGCAGACAGTGTAGAAGGGGAAGGTGGCCTGGAATCTCCTACCACCAGTTCAGGTGACATCAGTAAAATGGCACGCACCTCCTCCACCGGGACCATGTCGTCCAACGAGGATCCAGATGAGAAGGACGGGAACGTGGCCTCCTTCGAAGCACCAAACATAAATGGCATGGAGCCTGAGATTGCAGTTCCAACCGGACCTTTCCGTAACATTGGGCTCTCCAAAGCCGCCCAGACTCATCGGCTGCGTAAACTCCGCACCCCGTCCAAGTGTCGGGAGTGCGACAGCTACGTGTACTTCCAGGGAGCAGAGTGTGAGGAGTGTTTCCTGGCATGTCATAAGCGGTGTCTGGAGACGTTAGCCATCCAGTGTGGCCATAAGAAACTGCAGGGTAGACTCCAGCTGTTCGGCCGAGACTTCTCCCAGGTGTCCAGCGGCAGCTCTGACAGCATCCCATTCATCATCACTAAGTGCATTTCGGAGATCGAGAGACGAGCCCTGAAGACGAAGgGTATCTACAGAGTAAATGGGGTGAAGACTCGTGTAGAGAAGCTGTGTCAGGCCTTTGAGAATGGCAAGGAACTAGTGGAGCTCTCGCAGTGTTCCCCCCATGACATCAGCAACGTCCTCAAGCTCTACCTCCGACAGCTTCCAGAGCCCATCATGCCGTTCCGCCTGTACAACAGCCTCATGGGGTTAGCCAAGGAGAGCCTGCAAACTGAGGGAGGGGAGGCCGGGACGGGGAAGGGGCCAGAGCTGGTGGACCTAGGACCAGATACGGAACCAGCGGTCCTGGCTGTGGTGGATAGACTTAGGGAGCTGGTGAAAGAGCTGCCCAAGGCTAACATAGCCACGCTGCGCTACATCGTACGTCACCTGCGCAGGATTGCGGAGTTGGAGCAGGACAATAAGATGAGTCCCAGTAACCTGGGCATCGTGTTTGGCCCCTCTCTGATAAGGCCCCGGCCCacaggggccacagtgtccctGTCCTCTCTAGTGGACTACCCCCACCAGGCCCGCATCATAGAGACTCTCATCGTTTTCTACACAGCCATCTTCCAGTCCAAATCCTCTAGCACCAGCAGTCgcccatcctccatcctccaacagAGTGTCAGTGTGGATGTTGAGGAGGGCAGCAGTGCCGTGGTAGCTgaaggagaggaacaggaagccaaagaggaacagagcagaacagactcTGACAAGATGGAGGAGGGCTGTGGAAGTTTTCCAGGTTCCCTGAGCTCCAGTGAGCAGATTGTGGACTCTGACTCAGAGCTGGATGAGACTGGGAGGGGGTCCACACACCACCCACACTGCCTGGTCAAACAGGAGAGTGAGGTCAGCACAGAGGATGACCAACTGAACTGCAGGGATAGTCTGGAACTCTCCAGCCAGTCTGTACCCCAGACCGACCCGGATCCAGACCAAGACCAGGAGAGTCCTGGTCCCGATGCCTCGGACCACGACCCCCCTGAGCCCCCAGACAGCGAGCCCCCGGACCTGGAGGTGTCTGAGCAAGAGCTGAGCATCTCCCTGGCTGAGCTCAACATGAATCAGTCCAACAACTATGTTCTGGGCCATGTGTGGAGCGAATCTCAGTTTGGTGCCGAGGGACAGGGAGCCAGAGTTTGTGTAAACACGACCTGTGCAATGTGTCGACCTCACTGAAAGTCTTTCCTGGAATTGCATGATATATGAAGTTAAAGTTTTATATGTACTTCAAGAGGATGGATCCTGGTTTTAGCTTTGGTATAGAATGTCAGCATTGAATATACTACAAGGCACATCCCTCATAGACACTTAGTTATAACTGTTTTCTGCCATCATTCATTATAGTTCTAACCAGCTGTGACTTAATAATTTGGAAAGTAAATACCTTCTAGATTATCACTGTGCCAGTTTGTATTTCAAATATTTCTTTAGGGACGTTGCTCTTTAAAGCTTGAATAATGTCCAGTAGTGTGGGATCTTTGTCTTGTATGTGTGATTTGTGTGCGCGATGCATTTCTACGATAATTATTCCAGGTATTTAAAGTGCTGCTGGTTTTATTTCAGCactaaaattgaaaaaaaatgcatttttacATTTTGTGTTTTTATAAATTGTATCATTTTGCCTTGCGTTGGATGGATTTGTCGTTATCGGTTTAATCACTTTTTGTCAATGTTTTGTAATAAAGAGTATGCTATTATAAATGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479730 lncRNA downstream 114874 60966509 ~ 60967764 (-) True LOC110524237
TU479724 lncRNA downstream 145417 60937000 ~ 60937221 (-) True G423394
TU479721 lncRNA downstream 149590 60932799 ~ 60933048 (-) True G423391
TU479714 lncRNA downstream 180883 60901516 ~ 60901755 (-) True G423384
TU479664 lncRNA downstream 198672 60861527 ~ 60883966 (-) True LOC110524228
TU479834 lncRNA upstream 151159 61246558 ~ 61246791 (-) True G423495
TU479836 lncRNA upstream 153169 61248568 ~ 61248887 (-) True G423497
TU479849 lncRNA upstream 168492 61263891 ~ 61265340 (-) True G423509
TU479850 lncRNA upstream 170411 61265810 ~ 61266048 (-) True G423510
TU479877 lncRNA upstream 188164 61283563 ~ 61285664 (-) True G423534
XR_002473554.2 mRNA downstream 774 61058949 ~ 61081864 (-) False LOC110524239
XR_005051826.1 mRNA downstream 6913 61058949 ~ 61075725 (-) False LOC110524239
XM_036978009.1 mRNA downstream 29237 60973143 ~ 61053401 (-) False pip5k1ca
XM_021603706.2 mRNA upstream 9358 61104757 ~ 61120597 (-) False tjp3
XM_021603702.2 mRNA upstream 9358 61104757 ~ 61120852 (-) False tjp3
XM_021603708.2 mRNA upstream 9358 61104757 ~ 61123430 (-) False tjp3
XM_021603704.2 mRNA upstream 9358 61104757 ~ 61124205 (-) False tjp3
XM_021603703.2 mRNA upstream 9358 61104757 ~ 61124658 (-) False tjp3
TU479791 other downstream 11495 61058994 ~ 61071143 (-) True LOC110524239
TU478587 other downstream 981582 60100765 ~ 60101056 (-) True G422347
TU477230 other downstream 1944381 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 2046339 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 2668495 58413128 ~ 58414143 (-) True G420421
TU480894 other upstream 521471 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 554568 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 563634 61659033 ~ 61659585 (-) True G424502
TU481096 other upstream 792799 61888198 ~ 61927422 (-) False G424649
TU481097 other upstream 792799 61888198 ~ 61913769 (-) True G424649

Expression Profile