RNA id: XM_021603704.2


Basic Information

Item Value
RNA id XM_021603704.2
length 5752
RNA type mRNA
GC content 0.51
exon number 29
gene id tjp3
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61104757 ~ 61131881 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAATCAAGTCCTCTGTGAAATTGCTAAATCTAATTTTATAGTGTGGTGTAAACATTTAATCAGTTTATCCATTTTGGGGTGGTTTTACCAGTCTTGTCTACCGTCCGTGTCACCACCATTTAAGCTAACCATTAGGTTAGGGAAGTGTTTAAAGGCTTATGTACTGTTATGATCAAACAATGTGAGTTTCCTGGCTGTAACGCCCCCTTAGTAATATGATAATGTGTCTAAATGAGTATGTTATTTCTCAAGTCTTGTTTAAGTTTCACATACAACTGTTTATCTGATGACTGGACTACAGTGACTCACATACTGTAATATTTTCCATCTGAACCTTTTTAATTAAGGTGTTTCATCTTTTCCACGTGGCACTATATAGAGTTTCACACTGGCAAAATTGGTTCCGCCTTAAATCCCTGGCAACAAAGGGGCAATAGAAAGTGCTGGAAGGGGAGGAGCCTCTCATTGATCCAGGTGGGATTTGTTTCTGCTAGGTGTTTTTACCCACAAAGCTATAGTGCTCAGGACCCTTAGCTATTGATAATccacatttatttgatttgaagcaCAGGGTCTTTAATTTCTTGGCCTCCAACATGGATTATGACATGGAATAAAAACCAGGGTGTTTTTTGAGTAGAGGTAATGTGAGGAagccacaggtgtgtgtgttgctagGCTCAACTCCCAGTGGGGAATGGAAGTGAGGTTCAGAGAAGAAGTGAAACCAGAGATGGAAGAATTAATGATATGGGAGCAGCATACTATAACACTAAGCAAAGATTCCAAGATGGGGTTTGGCTTTGCGATATCAGGGGGCAGAGACAAGCCGAACCCAGACTCAGGGGGCACAGCTGTGATGGTTTCAGATGTGGTGCGGAACGGACCCGCTATGGGACGGCTGTTCGTCAGAGATCAGATCGTCATGGTCAATGGAGTGTCCATGGACAATGTCTACTCTACCTTCACCATCCAGAACCTTAAGTCATGTGGCAAAACAGCCAACATAacagtgAAGCGTCCTCGTAAGGTCCAGCTCCCAGCCAGCACCAGACCGTCGCGTGCCGCCTCCCACTCCAACCTGCTGGATCAGGACCCCCCACGGAGGATCCGACGCTACTCTGATGGCTCCGACCAGGCCCGCACCCCTGACCACTACAGCGCTCGTAGCACTACCTCCGATCGCAACGGGACCGCTCACGCCCTGCCACTTATGTCAGGGTACAAACGGCTGCCACACCAGGACTTCCTCGACAAGCCAATCAAAACCACCCTGCTGAAGAAGAAACTCACAGATGAGTATGGACTGAAGTTGGGAAGCCAAATCTTCATCAAACACATGACTGAGACGGGTCTGGCTGCCAAGGAGGGCACTCTGCAGGAGGGAGACCTCATTCTCAAGATCAATGGGATGACAACAGAGAACCTGTCCCTGCTTGAGACCAAGCACCTGGTGGAGAAGTCCCGGGGGAAGCTGACCATGATGGTCCTGAGAGACGACCGCAAGTTCCTAGTCAGCATCCCCGAGGTGGATGACAGCGCCCCCAACAGCGAGGAGGACCGCCATAGCCACAGCAGCTCTGAACTGGAGGACATTTCAGACCTGGATACAGACATCCCCACTCCTAGAAACAGAGTGTCACGCTCCGCCACTAGAGAACGACGCACACGCAGAAGAGCTGAGCAACCTCCTCTAGTAGCTAAGTCTCGTGACCAGTCCCCGGTGCGTTCGACACTGTCCCGGCCTGCTGCTAAAGCCTACCCCTCTCGCCGAGCCCCCTCAGAGTCCGAGTCTGACCGCAGTGCCTCACCCCCTCTTGTCAGGAAGGACAGCCCAGACATAGCCGACAAATACAGAACTCTTTCAGGGGTGTCCATGCTCCCCAACCCCAAAGCCTTACCTGCCGTCCTCGACTGGGCCGCCCCACGTCCTTCCCGTCCCTCCTCCGCCTTGCGAACTCGTAAAGtGGTGTCAGAGTCGGACTCGGACCGCAGTGCCTCGCCACCCCCTAGAAGAGGAGAGAGTTCCAGAGTCACAGAGGACCACTCCAGATACAGAGTGCTCCCTGACCTGCCCCACCCTGGGACACTGAGCGCCTCCCCCATCTCCATTCGTCAGGATCCCCCCCGACGGGTCTCCTCTCCTGTCAAAGCCCCACCTCCAGACTCTGAGACTGAGTCGGACAGCAGCTCCGGGCCCCCCCAGAGACAGGGCACCACCCACAGGCAGGACACCCGGAGCAGATACAGAGCCACTCCTTTAGTAGCTGTGGAGCCCCAAGTGGAGCCCCCCAAGTGGAAGGCCCCCAGTGTCACAATGAGCAAACATGCTAAGGGGCGCTCAGGATCAGAGTCGGAGGCAAGTTATGCAACCGTACCTCGACGGGAATTTGCAGACAGTGGAGGCTCCAGTTCCCAGGGATCCAAGGACAGTTACAGagctCTGCCTGAGATGCAGTCTTCTCCAGCTCCAGTAGTGAGACAGGACCCCCCTCAACGAGGCATGACCCCCTCCAGACCAGTCtcagATTCCTCTGAGTCAGACCGTGCACCTTCACCCCCTCGGAGGTCTGGGAGTACCGATGTGGAGAGCAACCACAGTGTTCCACGCAGAGCCAATGGAACTGTCCGCTATGGGATATCAGTGAAGAGCAACCCTCCAGCCTACTCCAAGACCGAGGAACCCATCTACTCCTTACCCCCAGACTCCATCCCCACACCTAACTTGGGATACAGCTCTGATCTGAACACAGTGTCGTTTGTGAAGGAGGGCAGCGTAGGCCTGAGGCTGGTGGGGGGTAATGACGTGGGCATCTTTGTTGGGGGGGTTCAGCCCAACAGTCCTGCCCATGAGCAAGGCATGAAGGAGGGGGACCAGATCATGCAGGTAAATGGGGTGGACTTTGGTCATTTCAACCGTGAGGAAGCTGCTATGTTCCTGATCAACATAAAGAGAGGGGAGCCGGTGGACATCCGTACTCAGAACAAGATGgacaTATACAAGAAGATACTGAAGTCCAACTTGGGAGACTCGTTCTATATCCGGACCCACTTTGACAACGAGGCAGAGGGCCACAACAGCCTAGCCTTCACCAGGGGAGAGGTGTTCAGGGTGGTGGACACCATGCACAGGGGCAAGCTGGGGAAGTGGCTGGCTATACGCATGGGCAACGACCTGCACGAGCTGGACAAGGGCACCATCCCCAACCAGGCCGGGGCTGAGACACTGGCCAGTATGGAGCAGGCTCAGAGGgccagtggaggaggaggggatcgCCAGGTCTCAGGGCCCAGGGCAGAGTTCTGGAAACTACGGGGGCTTAGAGGGGCCAAGAAGAACGTCCGCCGGACCCGCGACGACCTGCTCCAACTCACTATCCAGGGCAAATTCCCAGCGTACGAGAGAGTTCTGCTCAGAGAAGCTAATTTCAAACGGCCAATCGTCATCTTGGGTCCTCTGAATGATGTGGCCATGGAGAAGCTGGCCAGAGAGATGCCTGATGAATATGAGGTGGCAGAGATGGTTCCTCGTAGTAGTGGAGCAGACAGCGCTTCTACGGTCATTAAGCTGGACACAGTCCGAAGGATTGCAGAGAAGAACAAGCACCCTCTGCTGGACATTACTCCTACTGCAGTGGAGCGTCTGAACTACATCCAATACCACCCCATGGTGCTGTTCCTGGACCCACACAGCAGGAAGGACGTCAAGGTCATGAGGCAGAGGATGTGCCCCAACTCCAACAAGAGCTCCAGACGCCTCTACGCACAGGCCCTCAAGATGAGGAGGCACTGCGGCCATCTGTtcgcagCTCGTATTGCCCTCCAGCCCAGCTCTAATGTGTGGTATGAGACTCTGAAAGACAAGATCAGACACCAGCAGGCCAAACCTGTCTGGGTCTCAGAAGTCACGTTGGAGGGAGGCGGAGAGGAGGAGCTGGATGCGTTGGACCGGACTCATTCGGACTACCTGAGTGCTGCCAGTGACCTAGAGGACACGGATGGAGAGGCGTTTACAGACGGAGAGGTCTACACTGACAATGAGGACCTGGAGGAACCATTTGACTCCAGCAACCAGCCCCGGATATCCAGGCCCACCGCTCTGGCCCGCTCCTCAGAGCCTGCTGCCGAGTACCACAGCCCCGATCCATCCCCCGAGCCTCTGGGAGAGGTCCCACCCCTGATGCATGTGCCTGAGCCCAGGTCGACCCGTCGTCCATCTGACAGCTCTCCTCACGATGTCGTCACTGATGACACCCCGTCCTATCATAGCTTTTCAGATTCGGACTTCAGCGCCATTGACCCGGCTGTTCTGACCACCCACTCGGATGAACACCCTGACTTCATAGCCCCTAACCCCAGAATCTTTGTCCCTGAGCCCCCGTCAGCCGAGCTGCTGCCAGAGAGCCCCCCATCCGTCACAATGTCAGTCATAGAGAAGAAACTCCAACAGACCCATATGGCAGAACCTCAGGAGAGGAAAGCTTCCCCATCATTCATTGTGTTGGCTCACCACCAGGCTGTCCAGACGAGACGCACTCAGATCCGAGGCAGTGACAGCTCCGATGACAATGACGAGACTGAGGACTTCGAGTGGGGTCCAGCTACAGAACTTTAGATTAGAAAACACAGTTCCAGGACTACAAAACAAGAATGCTGGAGCACACCAACTCCAGAACTACAACTTTAATGTACAAAGTTCCAGAACTGCAGAACTACAGTTGTAGCCCATACAGTTCCAGAGCACAGACTTTGCCTCTTAAATGGGAGATGTGAAATGCTCTCAACTTCAGCCTTTGAGGATAACTTTTGGAGAGGTAGGTTGGAGGGCAACTGTCAGACCTGCCTTTAGACATGGGAATTCAGGCAATGGCTTCTGTAAACAAGGGCTCACACCTTTCTAAATGCCGAATTCCAAGAGTGGAAGTTAATTTTAATGGAAATTCTAATAAAAAACGCAGGGTTTGGTACTTGCAGTAAAGcaaacattttatttgtattgcATGTAACTTTTTAAAGAATGCTATTTTTGATCAAAACTTTTGAGATTTTACCAACACGGGCAACTTTGATGTCAAGGATGTCAATTGAACtaaaagctggaatccttaattgaaacaataacaaagcagtcACACTGCCtatgttttggtaaaaagctgagggatgatgggcctggagaaatgtaacaacTCTCAAATTCAAAGCAAGCACtatggactgaccatccatgatatcagaattatagttttaaccCTGTTTTGAGGCtacacagtgtttgtttacaaaaatGTGATGACAAGCTTaaattttgggttctgatggggtacgacagttgaactaaagctcattaggcatttataagttattcttcaagaatcaatgcaTATAGATAGCTacatcattcatttataagtccaattatgtagcaactaaggattcaaGCTTTCATGAGAACTGCTTCAAAAACGGTTATGGACATTCACAGGACACTAAATATATCAAAGCTCCATTTTCTAAATTATGATTAATTTGTAAAGAGAACACATTTTGTTCATTAAATATTACAGATCTGGTGAAAAAATATCTGCTCTTGTCATTGTTTTTCATCATGTCTAGAACATAGTAGAAAATCCTCACCTCGTCCACCACCCATCACTCTTGTAATTTTAACACCACTGTGTTACCAAACATCTTGGTTGAATGATCCAACATGGCAGCCTGAGCTCATTAAATTCTTAAACCCCCAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479767 lncRNA downstream 11269 61031271 ~ 61093488 (-) True G423435
TU479730 lncRNA downstream 136993 60966509 ~ 60967764 (-) True LOC110524237
TU479724 lncRNA downstream 167536 60937000 ~ 60937221 (-) True G423394
TU479721 lncRNA downstream 171709 60932799 ~ 60933048 (-) True G423391
TU479714 lncRNA downstream 203002 60901516 ~ 60901755 (-) True G423384
TU479834 lncRNA upstream 122353 61246558 ~ 61246791 (-) True G423495
TU479836 lncRNA upstream 124363 61248568 ~ 61248887 (-) True G423497
TU479849 lncRNA upstream 139686 61263891 ~ 61265340 (-) True G423509
TU479850 lncRNA upstream 141605 61265810 ~ 61266048 (-) True G423510
TU479877 lncRNA upstream 159358 61283563 ~ 61285664 (-) True G423534
XM_021603701.2 mRNA downstream 8371 61082638 ~ 61096386 (-) True arhgap45b
XM_021603699.2 mRNA downstream 9358 61082638 ~ 61095399 (-) False arhgap45b
XM_021603700.2 mRNA downstream 9358 61082638 ~ 61095399 (-) False arhgap45b
XR_002473554.2 mRNA downstream 22893 61058949 ~ 61081864 (-) False LOC110524239
XR_005051826.1 mRNA downstream 29032 61058949 ~ 61075725 (-) False LOC110524239
XM_021603714.2 mRNA upstream 15114 61139319 ~ 61184266 (-) False LOC110524243
XM_021603712.2 mRNA upstream 15114 61139319 ~ 61202562 (-) False LOC110524243
XM_021603713.2 mRNA upstream 15114 61139319 ~ 61216601 (-) False LOC110524243
XM_021603710.2 mRNA upstream 15114 61139319 ~ 61242006 (-) False LOC110524243
XM_021603711.2 mRNA upstream 15114 61139319 ~ 61242006 (-) True LOC110524243
TU479791 other downstream 33614 61058994 ~ 61071143 (-) True LOC110524239
TU478587 other downstream 1003701 60100765 ~ 60101056 (-) True G422347
TU477230 other downstream 1966500 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 2068458 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 2690614 58413128 ~ 58414143 (-) True G420421
TU480894 other upstream 492665 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 525762 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 534828 61659033 ~ 61659585 (-) True G424502
TU481096 other upstream 763993 61888198 ~ 61927422 (-) False G424649
TU481097 other upstream 763993 61888198 ~ 61913769 (-) True G424649

Expression Profile