RNA id: XM_021603711.2


Basic Information

Item Value
RNA id XM_021603711.2
length 8067
RNA type mRNA
GC content 0.48
exon number 29
gene id LOC110524243
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61139319 ~ 61242006 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCTTTGATTTTAAGGGCCTTTTCAAAACAGCTGAGAATAGGCAATGTATGCAATAGACTGTAGTGTTTGAATTGGCTAAATTGTGTTAAGAATATTTATTGTAGTGTTTTCTGAACTGAAATTTTCCTTTTCGTTTTTAATTGTCAAAGTTACTTCGGCAGATAAAGTATGCTGTTTGTTATCCACGAACCTCACGCCACAATCAGAGTAGCCTACAGTGTGACGACAGCAGCGGAACTATCTGCTTTCAATTCAAAATGGCAGCGTCTATCAGGAAGTGAAGAAACAACTGAAAATAATAAGTTGGATCAAATTCCTTGTTTCGGTTAATTTAACTCAGGAATTCGATTGAAAACATACGTGCGATCTGAGCTGGGATTTAGAATAAGTAACACATTCGTGGTGATGGAATGTGCTGGGCATTAGTAGGAGCGCTGTAGGACACAGCCAGCATACGTAAGCGAAGGTCAGGGGTCATGTGTCAGCCTGCAGCCTGATGCCCACACTCCCGTCACCCTCACTGGCCATGGACGGGGAGAACTACCTGCACCCAGAGGGGCCGCAGCTGAACAGCAGCATGTTCGAAGTGGCCTCTTCCAATATGGAGAGTTCTATGTATCCTTCTGCTTCCTGGGGATCATTCTCACAGCAGTCTGGAGGCTACAGCGCACACTGCCCTATGCAATCTGGAAACCAGCAATACCACTTGAATGACACCATGCCGGATATGCACATCGACATGTTCAGCCATTCTGGGTTCCATGACGATTTCCCCTGCCTCAACCTCCCCAGAAACGGAGGCTTCCCTCAGGACCTGTCCTGCATCGATGACCTCTCCAAcaactctctgttctcctctccggCCGACTCTCTGTCAGAGTACGCCGATGCCCAGGACTTCATACACGCAGACAACCTGGCCCACGTGCCTACACTATGGGACATAAACACACCAGCACAAAGCCAGCTGGAGGTTCAGAGAACCCAGACTCcggcagaagaggaggaggaggaggaggagacagaggagctgGGACACGTAGACACTTACGCCGACTACAAACCATCCAAATCTACCATAGGGATCTCCCACCCAGACATAGTGGTGGAGACCAACACGCTGTCCAGCGTCCCTCCTCCTGACATCACCTACACTCTATCCATTCCTAACCTCACCATCAACTGTGGCCTGCTCTCTGCCCTGCAACTCGAGGCCATCATCTACGCCTGCCAGCAACATGAGGTGATCCTGCAGAACAACCAGAGAGCAGGCTTCCTGATAGGAGACGGGGCCGGAGTGGGGAAGGGCCGTACGGTGGCCGGCATCATCCTGGAGAATTACCTTAAAGGAAGGAAGAAAGCACTATGGTTCAGTGTGTCCAATGACCTGAAATACGACGCAGAGAGAGATCTCAAAGACATAAATGCTCCCACTATTCCTGTGCATGCCTTAAACAAGATAAAGTATGGCGACACAGCTACCTCAGAAGGAGTCCTGTTTGCGACATACTCTGCTCTGATTGGTGAGAGTCAAGCAGGAGGGCAGCGCCGCACCAGACTCAAGCAGATCCTGGACTGGTGCAAGCCCGGCTTTGACGGCGTCATTGTGTTTGACGAATGCCACAAGGCCAAGAATGCCACGTCCACCAAGATGGGCAAGGCCGTGCTGGACCTGCAGCACAAGCTGCCCCTGGCCAGGGTGGTTTATGCCAGTGCCACAGGTGCCTCTGAGCCAAAGAACATGATTTATATGAGCCGCCTGGGGATCTGGGGCGACGGCACGCCTTTCAAGACCTTTGATGATTTCCTGCACGCCATCGAGAAGAGGGGTGTGGGCGCCATGGAGATTGTTGCAATGGACATGAAGGTGAGTGGGATGTACATCGCCCGGCAGCTGAGCTTCTCAGGGGTGTCCTTCCGCATCGAAGAAATCAGCCTGGACGATGACTTCAAACTGGTCTACAACAAATCTGCCAAACTGTGGGCGGAGACTCTGGCCGTGTTCATGCGTGCAGCGGATGAGCTGTGCTTGGTCAGCAGGAAGTCCCTGTGGGGTCAGTTCTGGTCTTCTCACCAGCGCTTCTTCAAATACCTCTGCATCGCCGCCAAGGTCCGCTGCCTGGTGGAGCTGGCCAATAAGGAGCTGGAGGCTGGCAAGTGCATTGTGATTGGTCTACAGTCTACAGGAGAGGCCCGAACCAGAGAGGTCCTGGATGAGAATGATGGACACCTGGACAGATTCGTATCCGCAGCAGAGGGGGTGTTCAAAGCTCTGGTACAGAAACACTTTCCCTCTGAGAAGCCGAGGAGAGAGAAAGCGCCTGGAAACAAGAGAAAACGTAAGCCCAGGGGCCGGCAGCCCAAGTTCCCAAAGCACACCATGGTGGATCCGGGGGGTGTAATCAACATCAGTGACGACAGCAGCACGGACACGGACGGCATGGACACCGACTCCAACTCCTCACCCGACTCCCTGCTGGACAACAACAACGACGACGACGTCATCTTCGTCGACACCAGGATAGAGGAGATGAAGCAGGACCTCCTGAACAAGATCGCTGACCTGGGGAAGGAGCTACCTCTGAACACTCTGGATGAACTCATCGACAAGTTGGGAGGTCCAGAGAAAGTCTCGGAGATGACTGGTCGTAAGGGGCGTGTGGTGCGACGGCCTGACGGGAGCGTGCGCTACGAGTCGCGTGCGGAGCAGAGCCATACCATCGACCACATCAACCTTAAGGAGAAGGACCGCTTCATGTGCGGAGAGAAGctgGTGGCCATCATCTCAGAGGCGGCCAGCTCGGGCATCTCCCTGCAGGCAGACAAGCGGGTGAAGAACCAGTGTCGGAGGGTCCACATGACGCTGGAGCTGCCCTGGAGTGCAGACAGAGCCATTCAGCAGTTTGGTCGTACCCATCGCTCCAACCAGGTGACGGCTCCAGAGTACATCTTCCTCATCTCTGAGCTGGCCGGGGAGAGACGCTTTGCCTCCATCGTGGCCAAGAGACTGGAGAGCCTGGGTGCATTGACCCACGGTGACAGGAGAGCCACAGAGTCCAGAGACCTGAGCAAATACAACTTTGAAAACAAGTATGGTACCAAGGCTCTAGATAAGATCACCAAAGCCATCCTGGGTCACATTGAGAGCAAGGTGTCCCCTCCCAAAGGCTACCCCGGGGGCGATTCCCTGTTCTTCAGAGACATGAAGCATGGCATGATGGACGTGGGCATCTTCTGCAAGGAGCCTCGCTTTGGTCTCAGTACTGAGAAAGACTGCAGCATCACCAAGTTCCTCAACAGGATCCTGGGCCTGGAGGTCCACAAGCAGAACTCTCTGTTCCAGTACTTCACTGACAACTTTGACTACCTGATCGAAAAGGACAAGAAGGAGGGCAAATACGACATGGGCATCTTAGATCTGGCCCCAGGTAACGATGAAATCTATGAGGAGAAACAGGAAACCTTCATGACAGTGGGTAACCCCCAGGACGGACAGGTTGTGCTCTACAAGATCAGCGTGGATAGAGGGATGCCCTGGGAGGAGGCCTACGAGAAGGCCCAGAACCTCAACAGTCCTGACGAAGGCTTCTACCTCTCCTACAAGTTGCGGGGGAACCACCCTTGTGTGCTGCTGGCGGAGCAGGGCCGAGGGAGGAACTTCATCGTCTACAAGCCCAACATCGGCAAGCAGGCCCACCCTGAGAGCCTGGACAACCTGCAGCAACGCTACCGCAAGGTGACCCCAGACCAAGCCAAGGACAGCTGGGAGAGCCAGTTCAATTTCTCCTTTGGGAAATGTAGCCATGCTAACTGGAACGGGAAGTGTAAGAAGATCGAGGAGGGACAGGAGTGTCTGCAGGGTATGCGTCTGCGCCAGTACCACATGCTGTGCGGGGCGCTGCTGCGTGTCTGGAAGCGCGTGGCTGACGTGGTCTCTGACATCACCAGCTCCAGCATCCTGCAAATTGTACGCCTCAAAACCAAAAATAGTAACAAGCAAGTCGgtATCAAGATCCCAGAAAACTGCGTGGCCCGTGTGCGAGTGGAGCTTCTCAAAATGGATgaggaggtaaagaggaggcGCAAGGAGAGGGAGCAGCATGCCCAGGAGCAGAGGCTAGCCGAGCAGCGGCAGCTTCAGGACATACACCTGCTTGCCAAGCCCTACAGCCAGCCCCACAGCCAGTCTCAGAGCCACAGGACTCAGAACTTCTACCAGAGCCTGATCCAGGCCAAGCCTTTACAGGTCAAGCCTCTACTACAGCCCAAACCCCAGCCCAGCCCGATCAACCAGCTCCCCAGCATGGCCAGCATCTTCTCCCACTTCCCCCACCACTTCCCCTCCCTGCCCCCAATGCAGCCCGCTCCAACCTCCACCACCAAGCCCTTCCGGGTTGGGGAGGAGGTCCTGGACCTGACGGtgagctcctctccctccccagacAGCACGGAGGGAGTCCTGGGCCTGATCAGCCTGACAGGGGGCTCCGACTTTGACCTGGAGAGACTGATATCGCGGCACGCACTCGCCGCCCAGAACACAGCACACATTCTGCAGCAACCTCTACAGCCACCGCTGATCAAACAGCGGCAGCTACAGTCGCCACAGCAGATACAACCACAGCTACAGCAGTGGTCAGATCAGCCTTTAATCAACAGCGCCCACCAGGACTACTATATCCTTGACCATCCAGACTCTCTGCCTTACTCTCTGTCCAGCCAGACAGCTACTAACCCCTCGAcctcttctacctcctcctcttcctccaacaCAGTGGCTCATGTCTcgtccccctccaccccctctcactTCTCCTCCTCGGCCCTTGCCCCCTCAGAACAGCAGCCCCTCCCTCTAGCCAACAGCCACTGCAGCACGGACACACTCATCAACGCGCGCGAGGTCCTGGACAACATGATGCGGACCAGTGTGGACCGCCAGTCGGTTATCCAGTACCAGCCGAACGAATGGGACTCTGCGTAACAACCTCTTCAGTGTGGCTGTCTGTCCTCTAGCTGCTGAGCGGGAACGCTCCCCTCAGGGCCTAGTCACACCACTGCCTGTCCTGTGCTCTTCTCTTCCCCATCCCTCTCCAGGCTCTGGATCCACAGGCCAGGGGCACGTTCACGAGACCAAATGGTTTGGTCTCATTCGGAGATGGTGAACGAATGACCCGGGTGGAATTGGCCGGGTCCCTTCATTGAGAGAGTAGGGGGGCTCAAAACCACAGTTTCTACACCGAGACTTGACTCATTTGAAGAAACACAATTCCACCTGGGTTTGATTTTGTTTTTAAGAATATCAAAAGCGCATGTGCTTTTTAAATGATCCATCACAGTTGGAATTGTGTTGCTTTGTTGAGGAAATCACAATGTATAAACATATTTTTCTAGAACCACAGCTTCCCCTTCTGGTTATGTTGGGTATCATTGGTAACGTTGCTGGCTTCCAACTGCCTTTCATGCACATCTGTTGTGTGTTTGCTTTTCTGTGTTGCCTCATCACCATTGCATCGACTTGAATTGGGCTATCTTGCAACGCTTGGTTTGATTAAACCAAGGGCTCCACTCAAAAACTTCAAACTGGAAAAATCAACACAGGGCAGATTGGTTCATAGGGGTGAAATGTTTTAGTTTTAGCCCCTTCCTCTCCCTTGTGTCCCCCTCTCCCTGCAGTTTCTATCATCACTCACGCCTGTGTCTCGCTTTTAAAAAAAGAAGGGAGGGGGAAAAGAAAAGTCTGCCATTGTAACAGTGCCTTTGGAAACCTACTTAAATGTAGTCTTTGAAACCCATATAGGCCTAATGTATAGATTTATACTCGAAGCATTGGCATCTTAATTTATTATATTTGTATTTAACTTACCCCACTGTTGAATCTATGATGGTGGTGAGCCAGGGATAGCCCCCACACCACAACTCAGTATGTGTATGCCTGTCTGTGGACCCTACACTATAGCGGTCTCTTCAGCCCATCGGCAGACTGTGTTGGAACCCTGCTTTCCCAGGCCTTGTGATAAACCGAGAACAGGGGTTAGATGGGATAGATACTGCTGGTTTAATGCAATTGGGTGGATGGTTTTAAAATGGTGTCAAATATCCAACTTTTTAAGTCTACACAACATTCATCCAACGATGTGACCCATGGTTTGCTTTTCATTTGAAGTTCTCAGGAAAGTGTCGAGtgcatttgttattttgttttgttcaaCTTTCTGACCAATATTAATATGAATTTGTTTTAGTCCATATTATATGTATATCGTATATTATACATTTCAGAATCTGTGAGATATGTCTGTCTTTGTGAAATGGATGCACTGTATTTTGTTCATGAGAAGCCTGGGTAAGTTCAACCAATCAAAAGCAATAAACAAGACATTTAGAAGTCTAAGTACTGTTTATGCTCCACAGCCGAAGGTTATAGATTCACCTGTGCATGGTAAGAATTGTAttcctctttctttctgttcTACTCGTAGTCTGTAGTTAAAGACATCTGAAATACTTATGAACTTTGTATAAACATTGTGATGGGGATAAAAGCAATGTGCTCTTGATGTTTTTGTCATCCTTGTTATTATGATAATTATAATTGTTATTTATATTTAAGGGACATGTTGTTTTTAGATTGTTTTCCTGATGATACTTTTGGTCAGGGATGTTTCTAGTTTTCAAgattataaaaacaaaaaaataagttTATAGCCTGCCACCAAATAATATTGCACTGTGCTGTACAGGGTGGTTGGTTTGTTTCTTTTCAGTTCTTTTATCTGATTCTGCTTGTGACTTAAGTAGAATCGTTCCAACTTTTACAGCTTCTGCCAGAACTTTAGAATGCAAAGAGATACCAAAGTATTCCACCCCCCTGTAGTTACTGGCTAGATCTGACCTATTATAGCAATCTCAGGAAGAAATCTTAGACATGTATTGATTGGCGGGGAGTTAAGAGAAATGTTATTGTTTTCCCTAACAACAGTGGTGAAACTAACCAATACACATTTTAGTACTATTTTATTTCTTCATTCTGTGCTGCGACTCTTgctgtatttttttatgtttgaGACTTGTGATGGGTTTGTTTGTCGGTAAGTGTTGTGAATTGTTGGTGATTTTAAGTGTTTATGCTATCTTAGGGCAAAGATCAAATTCTGTTTCTTTTATGGAACATTATCTGTTGTCgtcttttttttaatacattttaatgcTGACAAAGATTTTGAGCAGATTTGCACTTGGATATACTTGTATGTGCAGATTCTTTACCCACTTTCTGACAGATTCAAACATAACCCAGACATCCAATAGCTCAGGCCCGTGTTCTCGTAGTTACCCATCtcatagccctctctctctctctctctcttgtgcttcAGATTGTCCTAAATATAATTCCTCATCAGGCACATTCCAATAAATCCAAACATTTTCTCAATCTAACAGTTTGTGTCCCATGCTTCACCTATGGCCAATGGACTGTGTGGTATAACGCTCACATGAAGTAATATGCATTATAAACCTGGGGAAACGGACAAACACGGTTTGAAAAAATTAACAGCAATTTATCTTTTAGCTAGGTCTTTTTCATTTTCCGAAATTTGCACTAAGAATGGCATAATCAAGTTACTGTTGTCTGTTAACATTGAGAGTTGCAAGCTTGTTGTATTCCTGACCTTTTGATGGATTGCATTTTTGTATAACTGTAACCATCCTTGTTTCttcagctttaaaaaaaaaatagtacaCGTTTTTTTTGAAGTATCACATTAAAATAATTTATTGCTAACAAAAACAACTAAAAACATGCTACTGATTGTATGTATTTTTAAACAAAGGTTATTTTTTCTGTAAACTGTGTTCAGCACTTTTATTCTGGGTTGTGCttttgtttttctatatatttataATTTAGATCGAAATgtatatattgtaaaaaaaatatattaaaagcCTTTCGACTAATTCTTTAAAGGTTTTCTACTCATAACAAAAGGAAGGAATATATCATAGTGCAATCTTAACTTTGTAAACCAACAACAAATAAAACTGAAGATTGCAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479767 lncRNA downstream 45831 61031271 ~ 61093488 (-) True G423435
TU479730 lncRNA downstream 171555 60966509 ~ 60967764 (-) True LOC110524237
TU479724 lncRNA downstream 202098 60937000 ~ 60937221 (-) True G423394
TU479721 lncRNA downstream 206271 60932799 ~ 60933048 (-) True G423391
TU479714 lncRNA downstream 237564 60901516 ~ 60901755 (-) True G423384
TU479834 lncRNA upstream 4552 61246558 ~ 61246791 (-) True G423495
TU479836 lncRNA upstream 6562 61248568 ~ 61248887 (-) True G423497
TU479849 lncRNA upstream 21885 61263891 ~ 61265340 (-) True G423509
TU479850 lncRNA upstream 23804 61265810 ~ 61266048 (-) True G423510
TU479877 lncRNA upstream 41557 61283563 ~ 61285664 (-) True G423534
XM_021603705.2 mRNA downstream 7438 61104757 ~ 61131881 (-) True tjp3
XM_021603703.2 mRNA downstream 14661 61104757 ~ 61124658 (-) False tjp3
XM_021603704.2 mRNA downstream 15114 61104757 ~ 61124205 (-) False tjp3
XM_021603708.2 mRNA downstream 15889 61104757 ~ 61123430 (-) False tjp3
XM_021603702.2 mRNA downstream 18467 61104757 ~ 61120852 (-) False tjp3
trnaa-agc-3 mRNA upstream 24691 61266697 ~ 61266769 (-) True trnaa-agc-3
XM_036978016.1 mRNA upstream 62107 61304113 ~ 61511078 (-) True LOC110522983
XM_021603720.2 mRNA upstream 375981 61617987 ~ 61622355 (-) False LOC110524247
XM_021603723.2 mRNA upstream 418143 61660149 ~ 61679106 (-) True LOC110524249
XM_021603730.2 mRNA upstream 521112 61763118 ~ 61786354 (-) False LOC110524252
TU479791 other downstream 68176 61058994 ~ 61071143 (-) True LOC110524239
TU478587 other downstream 1038263 60100765 ~ 60101056 (-) True G422347
TU477230 other downstream 2001062 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 2103020 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 2725176 58413128 ~ 58414143 (-) True G420421
TU480894 other upstream 374864 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 407961 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 417027 61659033 ~ 61659585 (-) True G424502
TU481096 other upstream 646192 61888198 ~ 61927422 (-) False G424649
TU481097 other upstream 646192 61888198 ~ 61913769 (-) True G424649

Expression Profile