RNA id: TCONS_00031095


Basic Information

Item Value
RNA id TCONS_00031095
length 1477
RNA type mRNA
GC content 0.45
exon number 9
gene id XLOC_015555
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 31597841 ~ 31607080 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGATGACCTGAACTGGATCCGAGTTTCAGGAAATGATGTCAAATCTAAATCTAGACCTGGTTTCGACCATACAACTAACACAGCAAGCGGACACTACTTTTACATGGAAAGCACACCTGGTCAATTGAAAGGAAGTAGTGCTATAATGACATCCCCTGTGCTTCAAACAGGGGATGCCAAGTGTCTCCAGCTGTGGTATTACATGGAGGGAGAGGGTACTGGTACCCTAAATGTGTATCAACAGTTCTCAGGCAGTTCTCGGCCCCTGCTGGTGACGCAGTCTGGGGAACAAGGTGAACTATGGAGGTTTGCTCAGAGCCCTCTGACTTTCTCTGAGTCAAACTACAGGATCGTGGTGGAGGGGATTACAGGCCAGACTGAACAGGGAGTCATAGCGCTCGATGATGTTCAGGTTTCAAACTATCCCTGCACTCCTGCGGGGCAGTGTGACTTTGAGGCAAACTTCTGCAGCTGGATGAATGTGTTGGAGGTGGATGACGGAGACTGGCTCAGAGCTCAGGCAGGCACTGGAAATCACACACGGCCCAGTGTGGATCACACCACCAACTCTTCAACAGgtTACTATCTTTTTATGGACAGTTCTGTGGGCAACTGGGGAGATACGGCCATGATTCTGAGTGAGACATTCAGCCCTGACAGCAGGGGGCACTGCTTCACATTCTGGTATCATATGTCTGGACAGAAAGTTGGGACACTCAATGTATACACCAACAACAGGACCACCCATAGAAGTGGGCAGAAGTTTGGCCAGATAGTGTGGGTGGAGACAGGTGATCAGGGTGATGTCTGGAGGAGAGCTAACATTTATGTGGCACACAGGGAACATTTCTGGTTTATATTTGAGGTTCTGAAAGGAGAAGGTGCTAAAGGAAGTATAGCTCTCGATGATATCAACATTGTTCCTGGACCTTGTGACTCAGATCCCACTTCTCCACCTCCACACCACAGTGACACTGTAGGCATTGGTGTTGGAGTGGGAGTGACGCTTCTGGTAATATTTATTGTTAGCGCTGTCCTTATTGTGTGGAATAAAAGCAGAAAAAGGGAACCAATACTTGAAGATGATGAGCTCGATAGAAACTTTTCTTATAGCCGCTTTGACTGCAATATGAGCGGTTTAACGCCCACAGCAGAGAGCAGCGATTTCAGTGACTTGAGGACAATTTCACTTTCAGTAGATGGAAATGATGCATCTTTCATATAAGATGATTCATTGTGCACTGAAAGACTGCAGCTCTCAATCCAAATTCAGTTATTCCCACAACTGTAGCTatgagaatgaatgaatcattgtcAAACAGCACAAACATGACACTATCTACTGTAAATTTAATTCAATGGCTCATTggtaataattgtgttgtttttactgTTTCAATTTCTATCTCTAACATGTTTGGAGTACGTACAGTATAATActgtacatgttattattatatattagtattatttcagG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-14 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000139039

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033557 lncRNA upstream 60071 31537338 ~ 31540590 (+) True XLOC_015554
TCONS_00031093 lncRNA upstream 89047 31503305 ~ 31511614 (+) True XLOC_015553
TCONS_00031088 lncRNA upstream 151247 31448456 ~ 31449414 (+) True XLOC_015551
TCONS_00033555 lncRNA upstream 255465 31271082 ~ 31345196 (+) False XLOC_015548
TCONS_00031101 lncRNA downstream 177323 31784012 ~ 31786282 (+) True XLOC_015559
TCONS_00033558 lncRNA downstream 259810 31866499 ~ 31868755 (+) True XLOC_015564
TCONS_00031106 lncRNA downstream 335701 31942390 ~ 31948455 (+) False XLOC_015565
TCONS_00031111 lncRNA downstream 338084 31944773 ~ 31948762 (+) False XLOC_015565
TCONS_00033559 lncRNA downstream 412953 32019642 ~ 32090145 (+) False XLOC_015567
TCONS_00031091 mRNA upstream 80999 31476065 ~ 31519662 (+) False XLOC_015553
TCONS_00031090 mRNA upstream 88675 31475772 ~ 31511986 (+) False XLOC_015553
TCONS_00031092 mRNA upstream 92776 31492662 ~ 31507885 (+) False XLOC_015553
TCONS_00031089 mRNA upstream 142801 31454562 ~ 31457860 (+) True XLOC_015552
TCONS_00031087 mRNA upstream 148055 31437547 ~ 31452606 (+) False XLOC_015551
TCONS_00031096 mRNA downstream 7844 31614533 ~ 31626209 (+) False XLOC_015556
TCONS_00031097 mRNA downstream 7982 31614671 ~ 31620038 (+) True XLOC_015556
TCONS_00031098 mRNA downstream 59147 31665836 ~ 31669111 (+) False XLOC_015557
TCONS_00031099 mRNA downstream 59161 31665850 ~ 31669111 (+) True XLOC_015557
TCONS_00031100 mRNA downstream 64856 31671545 ~ 31674403 (+) True XLOC_015558
TCONS_00031085 other upstream 255465 31330923 ~ 31345196 (+) True XLOC_015548
TCONS_00031082 other upstream 269703 31271082 ~ 31330958 (+) False XLOC_015548
TCONS_00031079 other upstream 492247 31107929 ~ 31108414 (+) True XLOC_015547
TCONS_00031078 other upstream 499088 31101088 ~ 31101573 (+) True XLOC_015546
TCONS_00031072 other upstream 674357 30916200 ~ 30926304 (+) False XLOC_015542
TCONS_00031110 other downstream 335770 31942459 ~ 31948455 (+) False XLOC_015565
TCONS_00031118 other downstream 998158 32604847 ~ 32608027 (+) False XLOC_015571
TCONS_00031119 other downstream 1095131 32701820 ~ 32703332 (+) False XLOC_015574
TCONS_00031120 other downstream 1095162 32701851 ~ 32707411 (+) True XLOC_015574
TCONS_00031122 other downstream 1151974 32758663 ~ 32760332 (+) True XLOC_015576

Expression Profile

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