RNA id: XM_021603721.2


Basic Information

Item Value
RNA id XM_021603721.2
length 2987
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC110524248
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61637104 ~ 61655195 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTGTTGCTGCTGGAAATGTACGCGCGGTTGAAAGGAGCGCTCCTGAATCATTATCATCTAGAATCAGGTGGACATTTCTAGCCACGGCACCAAGTATTCATTTCAACGACAACGAATAGTTCTTGAATTTTTTTAAGACATTCCAAAAAATTTTAAAATAGACACTGCTGTCATATTTATCCGTCAATACCGGCTCAAACACAGAGTAACCTACAGTTAAGAACTGGGCAGAACGTGACACCGGAGAGATATCAAAGAACAGtGTTAAGCCATCTGTCAGACACGCAGACCGTAAACACAATGGGAAGGAAGAAGATACAAATCTCTCGTATCCTAGACCAGCGGAATCGACAGGTGACATTCACCAAGCGTAAGTTTGGCCTGATGAAGAAAGCGTATGAGCTGAGTgtactgtgtgactgtgagatCGCCCTCATCATCTTCAACAGCACCAACCGTCTGTTCCAGTACGCCAGCACTGACATGGACAAGGTCCTGCTCAAGTACACAGAGTACAGCGAGCCTCACGAGAGCAGGACCAACACAGACATACTGGAGACTCTGCGGAGGAAGGGCCTGGGCCTGGACGGGACAGAGCTGCTGGACACGGAGGAACCCATGCAGGTGGCAGCAGAGAAGTATGGCCCACACAGCGAGGGCATGGACCTCTCCCTGGCCCGCCAGCGCTACTACGTTAGTACTCACACGGGTCTTATCAGACAGGCCCCCTCCTTGCACTCACCAGAGGCCCAGTTCCTGGTGTCTACTGGCTGTGAGAATGGATACCCCAACTCCTCCAACCCCAGCCCGAGCTCCCACAGACCCCCGGCCTTCAAGCCCCTGGGCCCCAGACCAGGCTCAGCCAGCCCTGCAGGGCCCCACTGCCATGCTGCCTTCATGTCCCCACACTCAGGTATTGGCAACTCTATGTTCTCCCACGGCAACCTGAGCCGGGCCTTGGAGATGAAGACTCCTCCCCCTTTGAATCTGGGCAGTGAGAACCGGCGGACAGAGAGCCACCCAGGCATGGGTGGCACACGCGCCAACTTTAGCAGTTCTAGAGGCCTACTGTACCCGGGCATGCACCCAGGGAACCACATGCTGGCAATGGGGAAGACAGGTCTGCTGACTCATGGTCTGGGGGGCTACAGCCTCTCCTCTGCTGGACCATCTGaCTACAGTCACCCAGGTTTCTCCCATGCTGTGAGTCTACAGCGTGGGACTGTGAACCCATGGCAGACAGCACAACCACAGGAGCAGCATGTACCTCACCTCAGCCCAGCGATGTCCAGTGGAGGGTGCTCTTTTCCTTCTCAGTCCTcaacccccacccctcctcctcacccctccctcaaCCTCAGCATCAAATCGGAGCGCTGCTCCCCGGAGCACATCTGCTCCCCGACCTCTCCGCCCGTGCGCCACTTGAGGCAGCACTCTCCAATGAGCACCTCCAATTCCGCTCATCACACCCCCCAGGAGCCCTACCCAGCCAATGAGAGAGAGGATTTCCCCAAAGGAGGTGTTCCCTACCCGGCTCAGCACGgggcagaggagaaaggagggctGCCCCTGAGGCAATTAGAAATCAGCGATGGGTGGCAGAGATAGCTGGCAGCGACTACCACACACAAAAATCCTGCCACATGGTttccaacacacagagagaggtgatGGGTTCACTCGTTCACATCATCCCAGAGGAAAGAAAGACCCCCCTTAGAGCTGGGCTGGACTCTCCATTGTAGGCAATGAACATGTGGCACTGCCTCTCTGATTTTGATACAGTGAGGAGATACCGTGGGTGTGTTGTTGTTGGGTTTGGTTGGTTTGTCTGCGTGTTGGTTCAAAGGGGTGTCAAACCACACATCAATGTGGTTCTCTCCTCCTGCTTGGGCTAcagcacagagcagagcaggggtgAGAGCATCAGTCATTTAGCCATGTAACTTAGAGCACAGTGTTTCAGATTAATGCTTCACATTCAGGTCCCCATTTAATGTACATATATATAACTTTAATGCTTAGTTTATCCTTCAGCCCAAAATCAATGAAGTGGTCAGCTCACAGGAGACCGATTAGGGAGCAGCAAGGTTCTATTCATCTATCATGGTCTCAATGGGCATGGCCTCGTGATAGTGAGTGGGAAGTTGGGCTGGATAGGAATTGATCACagaaaaacaaaaatgtaatctCCACTTATGGATTTTTGTATTGAAAATCTGTGCATTTTTAAGTCTCTCAGGGATTTTGATCATTGGTTCCATTACAAAGGTTTAGTGTTGCTTTTAATAATACTGAGCAAAGCTGTTTGTTTTTACACTATATCCTGCatagtttaattatttatttttggacACTGGCCTTAATTATGAAAAATTATGACATCAATTTAAGATCAAAGGTCCATATTCAGTATAACCATTTTATAAAGTTGagctttttttttgtttaaataaattaaaaagctCAGGGCTGGACTACCGCATTTGGGGTCACTGGGGAACCGACCTCCAGTTACCCTGCTTTTCAACATATTTTGTATtggaaaaatgtgcagttttatatcaaatcaaatcaaatggtgtagtagaccttacagtgaaatgcttacttacaagcccttaaccaacaatgcagttttaagtaagagataaaaaaaaaagtaagagacaagaataacaaatgattaaagagcagcagtaaataacaatagtggagctacatacaggggtACCGGTTACCCCGGTGTCGATGTAATATAGTTAccccggtgtcgaggtaatatggTTAccccggtgtcgaggtaatataGTTAccccggtgtcgaggtaatagaGGTAGTATAGTTACCCCGGTGTTGAGGTAATATAGTTAccccggtgtcgaggtaatataGTTAccccggtgtcgaggtaatatggTTAccccggtgtcgaggtaatataGTTAccccggtgtcgaggtaatatggTTAccccggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480228 lncRNA upstream 2473 61634344 ~ 61634631 (+) True G423871
TU480216 lncRNA upstream 15727 61620898 ~ 61621377 (+) True G423859
TU480215 lncRNA upstream 16969 61619835 ~ 61620135 (+) True G423858
TU480214 lncRNA upstream 18040 61618490 ~ 61619064 (+) True G423857
TU480213 lncRNA upstream 24129 61612695 ~ 61612975 (+) True G423856
TU480231 lncRNA downstream 878 61655986 ~ 61656390 (+) True G423874
TU480258 lncRNA downstream 24513 61679621 ~ 61679853 (+) True G423901
TU480263 lncRNA downstream 30304 61685412 ~ 61685626 (+) True G423906
TU480264 lncRNA downstream 35600 61690708 ~ 61743853 (+) False G423907
TU480268 lncRNA downstream 41779 61696887 ~ 61772270 (+) False G423907
XM_021603719.2 mRNA upstream 37772 61590603 ~ 61599332 (+) True nr2c2ap
XM_036978014.1 mRNA upstream 351438 61267215 ~ 61285666 (+) True hapln4
XM_021603715.2 mRNA upstream 371898 61248572 ~ 61265206 (+) True tm6sf2
XM_036978012.1 mRNA upstream 556097 61077504 ~ 61081007 (+) True LOC118964633
XM_021603693.2 mRNA upstream 694722 60939330 ~ 60942382 (+) True LOC110524234
XM_021603725.2 mRNA downstream 131339 61786447 ~ 61793643 (+) False LOC110524251
XM_021603726.2 mRNA downstream 131339 61786447 ~ 61793643 (+) False LOC110524251
XM_021603727.2 mRNA downstream 131339 61786447 ~ 61793643 (+) False LOC110524251
XM_021603728.2 mRNA downstream 131339 61786447 ~ 61793643 (+) True LOC110524251
XM_021603732.2 mRNA downstream 153774 61808882 ~ 61840823 (+) False gatad2ab
TU478964 other upstream 941199 60694257 ~ 60695905 (+) True LOC110524226
TU476694 other upstream 2692887 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 3220328 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 3737456 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 4269767 57365364 ~ 57367337 (+) True LOC110524119
TU480287 other downstream 66429 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 450415 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 628044 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 1389982 63045090 ~ 63051530 (+) True G425224
TU482675 other downstream 2021306 63676414 ~ 63684239 (+) True nfil3-4

Expression Profile