RNA id: XM_021603723.2


Basic Information

Item Value
RNA id XM_021603723.2
length 3541
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110524249
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61660149 ~ 61679106 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCGAGGAATATTTTTACTGGAAATCTTCAATTTTTTTTTGAATATTTTATAAGGGTATCCAATTAAATCGTCAACAGGCTTCTCGATCCAATGAAAACGCTTGTCTTTCTGAGGATCGTGGAACCCAAATCCGGGGGTGCGTTCAATTAGCATGACCGCTTGCTACGTTGCGGAACAGTTTGTATTGAACACACGTTTTCCCAAAACGTTCTTTTACGTTCCTGAACAGACTTTGAGATACGTTCGCTCTCCTAGTGTACAGCCCCGTTTTGGTTCAAATGAAACGTTCTATTACGCTTTTATGTACTGAATGCAGCCCGAGTTTCACATGTCATCAGCTGTCAAGACACTGAAAGCTACCTACACGCGTGTGTAGCTAACACTACGAAAAAAACTTCGGATAATTGAAGAGATGGCGCTGATTGGAGTGCAGCTGGTGGTCAGCTTGCTGGCTGCTAGCATCATGCAGAGAATGGCTCCACACTGTTCATTTGCCCGCTGGCTCCTGTGCAATGGCAGTCTTTTCCGGTTCAAACACCCCTCTGAGGGAGAGCTGTGTGCCCTAGCTGGAAAACAGATGCCCAGCAAGCCCAGCAAGAGAGACAGGAGACAGAATGGGGACAGCAAGCCTCTCACAGTTCCCAAGGACATTGACCTTCACTTAGAAAAAGCTCCAGTCGGCGTCCTTGATGCCCTTGTACTGCGATTCTTCCTGGAGTACCAGTGGTTGATTGACTTTGCAGTGTATGCCATGGGCATCTACCTTTTCACCGAGGGCTACTTTTGTGTAGTGGACCCTGCCAAGGAGGTCCACATTGGGGCCATCTGGTGTGTGCTGAccgttctctgctgcctGAAAACCCTCCACTCCCTGATGGGCCACTACTTCAGGTCTGACGAGGGAGGCGAGCGCTCGGTGTGCCTGGCCTTTGGCTTCCTGTCTCttctggtggccatgctggtgcTGGTGGTCAGAGAGGACTACCTGGAGTTTGGCCTGGAGCCTGGTTTTAACAGTCTTTTTGACAACCTTGAGGTTTTCGCAAAACATCAAGGCTTTGCTGAGTGGTCAGTCCCTGTGACCAAGCTGACTGTGAAGTTGGGTCTGGCTGCCATCTGTGCTTTTATTGGTGCTTTGCTGGCCTTCCCTGGCCTCCGCCTAGCCCAGACCCACCTGGACGCAGTTCAGATGAACTCAGACCGCCCATTCATCcaAATGTTGTTGCACATGAGCTTCCTGGCCCCAGTGGTGGTGATCGTGTTGTGGATCAAACCCATTGCTAGGGATTTCCTGGGGAACGCTCCAATGGGGAAGACCTCAGTCACcctTATGTCAAGCGCGGTGTTTGACAGTGTTCGTCTGTGGACAGTGGTGGTTCTGTGCTGCCTGAGGCTGGCCCTCACCCGCTACCACATGCAAGcctacctcaacctctcccagAAGTGGGTGGACCAGATGAAGAAGGAGGCGGGGCGCATTGCCGCCATCGACATCCAGAGGAAGGTGACCCGTGTGTTCTGCTACCTGACCATAGTCACCCTGCAGTACATGGTCCCTGTTCTACTCATCCTCTTCTCTACTCTGGCTCTGAAGGCCCTTGGTGACTTCTCATGGAGTGGCGCAGAGCAGGCTCCGGGGGTGACCCCTGCCCTGGTAATGCCCACGGTCTCTCCCGTCCTGCCAGGGCTGGAGGAGGACGAAGAGGGGGTGGAGGACATGGAGGAGGACATCCAGGCCACGGTGGCCCGTCTAACCGAGGGCTTCTCTGCCCTGCGCTCTGTCCTCACCCCCCTCTTCTTCAGAGGCCTCTTTGCCTTCCTCACCTGGTGGGTGGCTGCCTGCCAAGTCATCAGCAGCTTGTTTGGCATTTACTTCCACCAGTACCTCATGCAGAACTGAAGAGGACTACACTACCCATAATCTCTAGCTAACACCGTGCCAGTGTTCCAGGCAGGTCAAACTCAATACAACAAATGGACAGGATGTGTGTGCTCCTGTCTGTTACTGTAACAAAGGTGTCACCGATATCAAAAGGGATGTGATGGTTTCTGACATGCTGACACCTTACTACTACTACCTTGTTGTCCTGTGGGCCCAGTCAGACCCTTAGACCTTGACCAGGACTATGATGAAATGCTATATAATGTGGACTGGATTCTGTCCAACTGCTATGTATCACATTTCTCTGTTTTAACAAATGCATTTGAAGCCagtgttacttttttattttttattttatcataTAGTATCAGGCAATGTTGCAAATGAGCTGTTTCTAGTCGGAAAAGGTACCACTACTTCCAGCCCAGTTTGCTAGTAGAGGCTGATTTCAGAAGTGCTTGATGCTTTATTTATTTTCGTCCTTTAGTTCTGCTGTACCGTACTGATTGTAATGGACCCGTGGAGTTCAGTCTATTCAGCAGTCATCACCACTCGACCGTCCATTCTCCTTAATCATTAGTTACCCACCTGTTAAAACAAAGCACTGAGGATATTTTACTGTGTTTTAATGGAGGTATTCAGTGAAGAATTCTAAGTGCCTGGAAACTCAGGGATTTTGAGTCAATGATAAGATATCTCTTTTTTTCTGCCAAATAGTAGACGGGTGATAACAGCTATCTATCTGTATCATTCAATAACACTCCAGCCCAGCCTGGATTTGGCAAATCTTACCTGTATTAGCAACCATCTTTCAGTCCCAACAAAGTTTGTCAGTTGAATTTGTTTGAACAAAGTATTTCCTGCGTTTTGTTTTGCTGCCAAACAATCATTTGCACTTAAAAAAGcgtcaatcagcagttgaaacaataacgaAGCACCTTCCCCGCCCCTGTTTCggtaaaagctgagggatggggagggaaaATGTAACCACTCTTTAATGTATAgatagagctatggatgcaaggactgaccatccatgatatcaaaatgatagttttaactgtgttttgaggctatatagtttTCTATATACTTTGtaaacaaacattggagtaaaacaagcttatttgggttctgatggggtagaACACTTGAACTGAGCTCATGAGGCAttaataagttatattcttcaagaatcaatgggtacaatTTATAAGTGAAACATtttatgtagcaactgcagattgcccctttttaGGATGATGTAGGCTTAGAACAAATCTTGCCTAAAACTTAAACCTAGGTCTGAAATGTGTTGCTGATTTTATAGTGTCAACggttaaaaatttaaaaaatgtatttacttatTTATACTCTATTGCCACTGATCATGTTGGAAAGGTACAGGTGTCATGCTGTTGGACTTTTGGGTCGTTTTGTTTTTGGAAAGTGTGATttctgtgtttaaaaaaaaaaatcaaattgaTTGAATGTTTGTTATTCATTTTACGTTGTGGTTTGTATGAAAATGTTTTTTCAACAAAAGACTTATGAATGCATGGTTTGAACTTTTAGTTGTATACAAAATGTTTTATTCTGTTGTCTGTGTGGCAAATGTTACTGGCTTATGAAATTATTAAACTCTTGTTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480922 lncRNA downstream 3745 61652932 ~ 61656404 (-) False G424501
TU480924 lncRNA downstream 3745 61655349 ~ 61656404 (-) True G424501
TU480925 lncRNA downstream 4909 61653456 ~ 61655240 (-) False G424501
TU480927 lncRNA downstream 5694 61653456 ~ 61654455 (-) False G424501
TU480921 lncRNA downstream 7865 61652022 ~ 61652284 (-) True G424500
TU480939 lncRNA upstream 1545 61680651 ~ 61680884 (-) True G424512
TU480941 lncRNA upstream 4797 61683903 ~ 61684158 (-) True G424514
TU480942 lncRNA upstream 5305 61684411 ~ 61684639 (-) True G424515
TU480973 lncRNA upstream 32334 61711440 ~ 61711921 (-) True G424535
TU481028 lncRNA upstream 158643 61837749 ~ 61844260 (-) True G424586
XM_021603720.2 mRNA downstream 37794 61617987 ~ 61622355 (-) False LOC110524247
XM_036978016.1 mRNA downstream 149071 61304113 ~ 61511078 (-) True LOC110522983
trnaa-agc-3 mRNA downstream 393380 61266697 ~ 61266769 (-) True trnaa-agc-3
XM_021603710.2 mRNA downstream 418143 61139319 ~ 61242006 (-) False LOC110524243
XM_021603711.2 mRNA downstream 418143 61139319 ~ 61242006 (-) True LOC110524243
XM_021603730.2 mRNA upstream 84012 61763118 ~ 61786354 (-) False LOC110524252
XM_021603729.2 mRNA upstream 84012 61763118 ~ 61786542 (-) True LOC110524252
XM_021601328.2 mRNA upstream 162455 61841561 ~ 61842727 (-) True tssk6
XM_021603741.2 mRNA upstream 354983 62034089 ~ 62037994 (-) False si:ch211-212d10.2
XM_021603746.2 mRNA upstream 397463 62076569 ~ 62083301 (-) False LOC110524260
TU480929 other downstream 564 61659033 ~ 61659585 (-) True G424502
TU480919 other downstream 8374 61649967 ~ 61651775 (-) True G424499
TU480894 other downstream 42905 61616870 ~ 61617244 (-) True G424474
TU479791 other downstream 589006 61058994 ~ 61071143 (-) True LOC110524239
TU478587 other downstream 1559093 60100765 ~ 60101056 (-) True G422347
TU481096 other upstream 209092 61888198 ~ 61927422 (-) False G424649
TU481097 other upstream 209092 61888198 ~ 61913769 (-) True G424649
TU481131 other upstream 319420 61998526 ~ 62001309 (-) True G424678
TU482117 other upstream 1124832 62803938 ~ 62808122 (-) True LOC110524277
TU482168 other upstream 1170898 62850004 ~ 62850247 (-) True G425612

Expression Profile