RNA id: XM_021603730.2


Basic Information

Item Value
RNA id XM_021603730.2
length 3683
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC110524252
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61763118 ~ 61786542 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGAGAAATGTGGCAACGGATCTCGGAAGACGACAGAGGAGTTGAATACTGAATGTGAAACATTGCTAAAGATTGTTCAAGATTGGCCGGATTTGCAACAAACACAGGCACAGTAATCAAGATTAAAGGCGAGGAATTCTGGATTGTCGGGTGTTGACTGACTGTCAGATACTGGGCGTCATCAAGGGCACACATGGCCCATACAGTGCAGGACCACCAGATGGCACAGCCCCAGGCAGCagtgttgtctctccctccctccggccAGGCTAAAAGATGGACAGTGTTGAACTCCCTGCTATGTGGAGCATTGGCAGGAGCCGTGGCCAAAACAGTCATAGCTCCTCTGGACAGAACCAAGATCATCTTCCAAGTGTCTTCACAAAGATTCTCTGCTAAGGAAGCCTTCAGACTCCTCTACTGTACATACATGAAAGATGGCTTCCTCAGTCTGTGGAGGGGCAACTCTGCCACCATGGTGCGGGTTATCCCCTACGCTGCCATCCAGTTCTGCTCCCACGACCAGTACAAGAGAATCCTGGGGGGATACTATGGCTTCCAGGGAAAAGCCCTTACTCCTTTTCCACGTTTCCTGGCAGGGTCGTTGGCTGGCACCACAGCTGCCATGCTCACCTACCCCCTGGACATGGTGCGGGCCAGGATGGCAGTGACACCCAGACAAATGTACAGCAACATTATGCACGTGTTTGTGCGCATTACGCAGGAGGAGGGCATTAAGACCCTGTACAGAGGCTTCTGCCCGACCATCCTGGGAGTGATCCCATACTCAGGAATCACCTTCTTCACATATGAGACCCTCAAGAAACTGCATGCAGAGAGGACTAGGCGGTCCCAGCCGTACTCCTACGAGCGCTTGGCATTTGGCGCGTGTGCTGGCCTACTCGGCCAGTCGGCCTCCTACCCGCTGGACGTGGTTCGCCGACGCATGCAGACGGCCGGGGTGACGGGCCAACAGTACGGCAGCGTCCTGAACACCATGAAAGCGATCGTGGTGCAGGAGGGTGTGgtgcgtggactctacaagggccTCAGTATGAACTGGATCAAAGGGCCTATCGCTGTGGGGGTCAGCTTCACCACCTTTGACCTCATGCACAACCTCCTGCACAAGATGCACCAGTTGGGATACTTCACACACTGAGCCAGCAGAGGGAGCCAGAGGAAAGGTTCACTGTTGAGACTAGAGTTGTCGTCCGTCGGTCACAGACACAATATGGATCCTCTAAGTCAGATAGGGATTGAAAGGGGAGAGTGGATActggacagacaggaggagacagaagcTGTCCATTTATTTAAGCGCACATCCTCTGACACACATTAAGCACGCACAGCCAGACCCCCCACTCTTGCTGTTGATGGATGGGATGTCTGTACTAAGGCTACAATAAGTGTCATCAAGCAGGGTAGATGTTTGATGAGTTTGCAATATGAGAGGTATGAGAATGTGAATGATTTTACATTTCCAGTCCTGATATTTGTTTGAGATTGTGGTATTATCTCTGGTAAGGGCACTTAATGGGGCTGGAGATTATCAGAGGCGAAGAACTTTACAATCGGTTCATTTTAGTATGGAATTTTATCAACTATGCTCACAATGTTTTCTGTTGCTTTAAACTGAAGATTCACTTATATTTTCAACCATGCATTGCTGCTTTTTCTTCTTGATTATTTCCGGGCTTGTTGCAGCTGTAATCCGCTGCTCTGCTCACTTCTGCATTTAGCATCAACGTCTCATGGAAGAGTCACCTAGTGGGCCTTGCTGCCAGAAAATAGTTGGTAGTTGGGGATGTAGTCTTATTCCAAAGAGCTTGTTTCTGTTTTGTGACGGTTAAAAATGTCAATTTTATGACGTGCCAAGATGGAATGTACTGTCAggaaaattattggcacccttgataaagatgagcaaataCTGTATAACAAGTACTGAGCTATAATGTATGCTCAAAAATGAGAAAAttctattttatactaatacagttgctcagagaaagagattttgtttatcaagtaatatttttttctccaaaaaagAGAGGTCAAAATTATTGCCACACTTGTTTTCAATACCTCTCCTTGCGAGGATaacgacactgagcctttttctataatgtttgatgagattggagaacacattgggagggaaattggaccattcctccatacagaggAGTGTGGTTCAAGTCTAGAAActgatggccattgcaaaatgttgatttgtgtggtcaattaactggtgtgcgtggccaaagagctcaattGTCATGTCATCTAACAAATGGAGAttgctaaacggcattggcaGTTGGTTTGGAACCtttgctatggtcagatgacactaCAATAAAGCCCTAGGCTTCCACAGAATGATGCATATGAAGAGAAAAAAACACCTACTGTTccatatggtggtggatctttgatgttattggGGCTAATTTGCTTCCACTGGttctggggcccttgttaaggtcaacggcagcATGAACTTCACCCAGTACAAGGACATTTTAGCCCAAAACCTGATTGCCTCTTCTAGGATGCTGAAacttggccacaagtggatcttccagcaagatgataaccccaagcacacatcaaaatccacaaagtaATGGCTAATTGACCACAAAAATCAACATCAGTCTCCGGACTGGTTTAAATTGAAGAGGGCAGATGAAGGATATcgaggatctggaaggattctgaaTGGAGGAATAGTCtgagatccctcccaatgtgtcaatctcataaaacattttagagaaaGGCCCTGTGGCATTCTCCTCGCAAGGTGACTTTTTAAAACTAGTGATCATTtatatccattgtttaaaaaaagtttttttgtATTGTTATATTTTGTTTATCTGAGCAATTGCATTGGTATAacattttttaatgttttattctCCATTGGACCTGACCGTCGGTGTGCAATAATGCCCTCACGTTGAtgagacagagatggtgatatcataaatagtttatttttattaacAACATGCCTGCAGTCCCTCACACACTGAATGCCATCCTCCATTTAAACAAACTGAAGCGTTTCAGGCAGGAGGCCACAGGTGTGTGCAATCAGCGTATTAGCAAGGCTCGCAAGCAGTCAGCTGACAATAAAGGGACATGTCACTCATTTGAACGTTCAAACCAACAGTTAAAGGTTGTGCTGATGAAATAAAGATGAGTTTATTGGATTTGCACGTTATAATGGATTGACAATTTAGCTAGGATCCtagatatataaatacattcattCATTTTACAGTGAAGGCTACTCCTTCACAGTCAGTAATCATTTCAGCCTGACTGCGCAGTTTCACTATCTGGTGTCTATAAATATAGATTTGTAGTGTCTAACCGGAATCTAATGGATATCATCCATATTTTCCCACTAGATGTTGCCTAAGGCATAAATATATAATCAGTATATTTCTAATATTAAGGTAGTCTTTCTATTATCTGTAGTCTTATTGTGAAGGAAATCCAGTTTGTCATAAATCTGTTTCTATGTTTATTGATACTTTACACAAGAatttctctacacccgcaataacatctgctaaatatgtgtatgtgaccaataaaattggatttgtttgaCTTGATATTGATGTCTTGAATATATTAAAATACTAAAGAACTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480973 lncRNA downstream 51197 61711440 ~ 61711921 (-) True G424535
TU480942 lncRNA downstream 78479 61684411 ~ 61684639 (-) True G424515
TU480941 lncRNA downstream 78960 61683903 ~ 61684158 (-) True G424514
TU480939 lncRNA downstream 82234 61680651 ~ 61680884 (-) True G424512
TU480922 lncRNA downstream 106714 61652932 ~ 61656404 (-) False G424501
TU481028 lncRNA upstream 51395 61837749 ~ 61844260 (-) True G424586
TU481063 lncRNA upstream 67446 61853800 ~ 61878515 (-) True G424620
TU481093 lncRNA upstream 101844 61888198 ~ 61914957 (-) False G424649
TU481094 lncRNA upstream 101844 61888198 ~ 61899139 (-) False G424649
TU481095 lncRNA upstream 101844 61888198 ~ 61918206 (-) False G424649
XM_021603723.2 mRNA downstream 84012 61660149 ~ 61679106 (-) True LOC110524249
XM_021603720.2 mRNA downstream 140763 61617987 ~ 61622355 (-) False LOC110524247
XM_036978016.1 mRNA downstream 252040 61304113 ~ 61511078 (-) True LOC110522983
trnaa-agc-3 mRNA downstream 496349 61266697 ~ 61266769 (-) True trnaa-agc-3
XM_021603710.2 mRNA downstream 521112 61139319 ~ 61242006 (-) False LOC110524243
XM_021601328.2 mRNA upstream 55207 61841561 ~ 61842727 (-) True tssk6
XM_021603741.2 mRNA upstream 247735 62034089 ~ 62037994 (-) False si:ch211-212d10.2
XM_021603746.2 mRNA upstream 290215 62076569 ~ 62083301 (-) False LOC110524260
XM_021603747.2 mRNA upstream 290215 62076569 ~ 62083301 (-) False LOC110524260
XR_002473566.2 mRNA upstream 290215 62076569 ~ 62083302 (-) False LOC110524260
TU480929 other downstream 103533 61659033 ~ 61659585 (-) True G424502
TU480919 other downstream 111343 61649967 ~ 61651775 (-) True G424499
TU480894 other downstream 145874 61616870 ~ 61617244 (-) True G424474
TU479791 other downstream 691975 61058994 ~ 61071143 (-) True LOC110524239
TU478587 other downstream 1662062 60100765 ~ 60101056 (-) True G422347
TU481096 other upstream 101844 61888198 ~ 61927422 (-) False G424649
TU481097 other upstream 101844 61888198 ~ 61913769 (-) True G424649
TU481131 other upstream 212172 61998526 ~ 62001309 (-) True G424678
TU482117 other upstream 1017584 62803938 ~ 62808122 (-) True LOC110524277
TU482168 other upstream 1063650 62850004 ~ 62850247 (-) True G425612

Expression Profile