RNA id: XM_021603726.2


Basic Information

Item Value
RNA id XM_021603726.2
length 3158
RNA type mRNA
GC content 0.45
exon number 19
gene id LOC110524251
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61786447 ~ 61793643 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAACGACAGCTGCCAAACTGCGACAAGGAAGGTGATGGCCTATTTTTATCCCAAAATTATTGGAGTTTGCTCGCGCACGAGATTATTGTCTTTCAAGGGTTTATCAGTTTGAGGGCACGTACAATTGTTTTGGACTACAAGTCCCATATATATTTTCAAACCGAACATTGGACTCCACGCGAAATCACGCGAGGGAGACACAGCACTCAGTTTTTTTTGACACAGCGATCagtacttgttgttgttgttgttttcggGAAAATGGCGTCCAACGTAGAGGCCCCGGAGTCGTGGTACCTCGCCCTCCTTGGCTTTGCAGAACATTTCCGCACCTCAAGTCCACCCAAAATTCGTCTGTGTGTGCATTGTCTTCAAGCGGTTTTTCAGTTTAAACCCCCGCAAAGGGTGGAGGCCAGAACTCACCTTCAACTCGGCTCGGTGCTCTATCATCATACGAAGAACAGCGAGCTGGCGCGGAGCCACTTGGAGAAAGCGTGGTTAATATCACAACAAATCCCACAATTTGAAGATGTTAAATTTGAAGCAGCAAGTCTTTTGTCCGAACTCTATTGTCAGCAGAATCTGGTGGATTCTGCAAAGCCTTTACTGCGAAAGGCAATCCAGATCTCACAGCAAACTCCCTATTGGCACTGTCGCCTGCTGTTTCAACTAGCGCAACTGCACACTCTGGAGAAAGACCTTGTGTCTGCCTGTGACCTCCTAGGGGTCGGTGCTGAGTATGCCAGAGTGGTGGGCTCGGAATACACCAGGGCGCTGTTCCTCCTGAGTAAAGGAATGCTCTTACTGATGGAGAGGAAGCTGGGGGAGGTGCACCCTCTGCTCACGCTGTGCGGGACGATCGTGGAGAACTGGCAGGGAAACCCCATCCAGAAAGAGTCTCTCAGGGTATTTTTCCTGGTGCTGCAGGTCACACACTACCTGGATGCCGGACAGGTGAAGAGTGTGAAGCCCTGTCTTAAGCAGCTGCAGCAGTGCATCCAGACCATCTCTACACTCCATGATGATGAGATCCTGCCCAGTAACCCTGCTGACCTTTTCCACTGGCTGCCCAAGGAACACATGTGTGTTCTCGTCTACCTGGTGACTGTCATGCACTCCATGCAAGCAGGGTATTTGGAGAAGGCACAGAAATACACAGACAAAGCACTCATGCAGCTTGAGAAACTAAAAATGCTGGACAGCAGTCCCATCCTTTCAACGTTCCAGGTCATTCTGCTGGAGCACATCATCATGTGTCGGCTAGTCACTGGTCACAAGGCTACTGCATTACAAGAGATCTCCCAGGTCTGCCAACTGTGCCAACAGTCCCCCAGGTTATTCACCAATCACGCTGCCCAACTCCACACTCTACTAGGCCTGTATTGCATATCTGTCAACTGTATGGACAACGCAGAGGCACAGTTCACCGCCGCTTTGCGGGTAAGTGACCTaaccacacaccaggaactgtggGCGTTCATTGTGACAAACCTGGCCAGCGTCTACATCAGGGAAGGAAACAGACACCAGGAGCTCTACAGTCTCCTTGAGAGGATAAACCCTGATCACAACTTTCCTGTGAGCTCTCACTGTCTCCGCGCTGCAGCTTTCTACATCCGAGGACTGCTGTCCTTCTTCCAAGGACGCTACAACGAGGCCAAACGGTTCCTTAGAGAAACTCTGAAGATGTCCAATGCGGAGGACCTGAATAGACTGACAGCCTGCTCACTGGTTCTGCTAGGCCATATATTCTATGTACTGGGAAACCACAGGGAAAGCAACAACATGGTGGTTCCAGCGATGCAGCTGGCCAGCAAGATCCCTGACATGTCTGTCCAGCTGTGGTCCTCTGCCCTTTTAAAAGATCTGAACAAGGCCCTGGGAAACACCATAGATGCCCATGAAGCTGCTCAGATGCACCAGAACTTCTCCCAGCAGCTTCTCCAGGACCACATCGCTGCCTGCAGCCTCCCCGAACACAACCTAATCAGCTGGACGGACGGCCCACCACCTGGGCAGTTTCAAGCCCAGAACGGCCCGACAACCAGCCTGGCCAGCCTGCTATGAACACATGGCTCTGTCATACACATGCatacgagagagcgagagcaaactGACAACACACAAGGGCTACCATTCTTCTAGCCTCAAAGATGTCTATAATTCAACTATCGTTTCTTTACGTCTTTTGAAAATTAGAGGGGTACTGGGAAAACATAGTAGCAGTTATACAATTAATTTATTAATGTTGATATTTTTGTAACTTTAGCAAAATATTTGACCGCTTTTCTTTGTATGAATGCCATTTTTCCTATGCATGGAAGTTACTGATGTTGATTAACTCTTCAACTGTTGCTAATCATTTGCTGAGGATTTTCACAGCTAGTCATTGTTTTCTAGCACCACATCCACGTGAATTAGTGTAGGTACACTTGGCATTACTTCTCATGGATTGAACCAGCAACATGTTTTGTTTCATGTTAAGTTTGGACTTGAATGTTAAATTGGTAGTGTTGAGATAAAGGGTTTGAATATCTTCCTGAAAGAGTGCATGAGAGAATAGTGAAGGAGTTGGAATGTTCATTAGTGCAGTTACTTAATGGACCAGCAGGTGTCCCTTTTGAGCTGTGATTTGATAAACCTGCTTTGAGAGAGGAATATTTGTTGTAACATTTGACATGCCATAGATCACCGATTTGCCCATTTTAAAGATGCATCACAAACACAACTATTATTGGATATACATATGAATTCTAGTTCATTTATTGAGTTCCATAGATCATGAAGATGGACATTTTTTGAACATACAAGAAACTTTTGGATAAAGAGAAATCGGTGTATTACtttttgttatgttataattTGTCTAGTTAAAGGTTTTCTTTACAATACATTGTATACATATGCCACATGGGAAACCTTTATTGTACAGTGACATTTTATAAAGTAAATGTAGTCAAGTGTGTAATGTATTTTAACTACCAGTATCACATGTAGAAATCCAACTCAATGCTTGCTATTTAAGTCAATCTATATGGACACGTCAGAAGCTTGAGTATTTGCCATATTCTATCCAATGCCTATGTTTTTATTGATTATATTGTTTTTCAATATTTTTGGGGACAAAGTCTGAATAAATGTGGTATTTGCAACCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480268 lncRNA upstream 14177 61696887 ~ 61772270 (+) False G423907
TU480310 lncRNA upstream 20497 61763326 ~ 61765950 (+) True G423945
TU480264 lncRNA upstream 42594 61690708 ~ 61743853 (+) False G423907
TU480270 lncRNA upstream 42594 61696887 ~ 61743853 (+) False G423907
TU480265 lncRNA upstream 42594 61697136 ~ 61743853 (+) False G423907
TU480386 lncRNA downstream 92910 61886553 ~ 61960274 (+) False G424016
TU480387 lncRNA downstream 92910 61886553 ~ 61913740 (+) False G424016
TU480388 lncRNA downstream 92910 61886553 ~ 61927236 (+) False G424016
TU480389 lncRNA downstream 93327 61886970 ~ 61929755 (+) True G424017
TU480390 lncRNA downstream 93656 61887299 ~ 61954426 (+) True G424018
XR_005051827.1 mRNA upstream 131252 61637104 ~ 61655195 (+) True LOC110524248
XM_021603721.2 mRNA upstream 131339 61637104 ~ 61655108 (+) False LOC110524248
XM_021603722.2 mRNA upstream 131339 61637104 ~ 61655108 (+) False LOC110524248
XM_021603719.2 mRNA upstream 187115 61590603 ~ 61599332 (+) True nr2c2ap
XM_036978014.1 mRNA upstream 500781 61267215 ~ 61285666 (+) True hapln4
XM_021603732.2 mRNA downstream 15239 61808882 ~ 61840823 (+) False gatad2ab
XM_021603733.2 mRNA downstream 15239 61808882 ~ 61840823 (+) False gatad2ab
XM_021603734.2 mRNA downstream 15239 61808882 ~ 61840823 (+) False gatad2ab
XM_021603735.2 mRNA downstream 15239 61808882 ~ 61840823 (+) False gatad2ab
XM_021603737.2 mRNA downstream 15239 61808882 ~ 61840823 (+) False gatad2ab
TU480287 other upstream 64423 61721537 ~ 61722024 (+) True G423922
TU478964 other upstream 1090542 60694257 ~ 60695905 (+) True LOC110524226
TU476694 other upstream 2842230 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 3369671 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 3886799 57884380 ~ 57899648 (+) True G419452
TU480458 other downstream 311880 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 489509 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 1251447 63045090 ~ 63051530 (+) True G425224
TU482675 other downstream 1882771 63676414 ~ 63684239 (+) True nfil3-4
TU483050 other downstream 2383385 64177028 ~ 64179386 (+) False sac3d1

Expression Profile