RNA id: XM_021603733.2


Basic Information

Item Value
RNA id XM_021603733.2
length 5156
RNA type mRNA
GC content 0.50
exon number 11
gene id gatad2ab
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61808882 ~ 61840823 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCGGTTGCCCCTTGTGTGACCACATGATAGTGAAGTGACGCCTTGTTCCATGTGTGAGAGCAGCTCATTATTTGGCAACCGGTCAGAGTGGCAGCGGGCAGGGCTGAAGAGGGGATCCCCGGGATTTATTATTTTTGTACATCGAATTACGGGTGTAAATTGTCTGTCAAAACAAGTGAAAAGCAAAAGGGACACCTCTTCTCCGTAGAGCGATGTCGGAGGAGGCGGTGCGTCAGACGCGCAGCCAGAAGCGGGCCCTGGAGAGGGACGTGGCGGCCCCTGGCAGCCCCGGGGGGGAGCTGGACATTAAGAAGGTGAAGCTGGAGAACAATGAACAGCTACCTGCAGCAGACGGCCCTATAGCTCTAGTGGCTGTGGGGGGAGGAGATGTGGTGAAGATGGAGCAGGCAGCCAAGGAGGCCAGCATGAGCATCCAAAAGACCGACGAGGTCAAGGCTACCATCAAAGTGGAGGTGCAGACCGGGGACAGGCCTGTCGACATGAGCACGTCCAAGAGtgACTTAAAGAAAGAGAGGCAGCCCCTGTCACCAAACAATGACGTCATAGTGCTGTCAGACAACGAGCCGTCCAGCCCCGTCATGAACGGCCTGAACCATTTCaggaagacagacacactcatGAAGAGCAGGCCAGATGAGAGGGAGTGCATCATCAAACAGTTGATGGAGGAGCTAAGACTACAGGAGGCCAAGCTGGTGCTGCTGAAGAAACTACGACAGAGCCAGACACAGAAGGAGAGCACTGTACAGAAGccaacctctggctctgtagccactcctccacctctGGTCAGAGGCAGCATGACATCAGGCAAAGGAGTGCTACAGGTGTCGTCAGTCCGTAGCTCAGGCACAGTGATCCCTCCTCCATTAGTCCGGGGTGGGCAGCATGTCCCGTCCAAGCAGAACTCCCAGACCACCATGCCACCCCTGGTCAGAGGGGCGCAGCCCATCGCGGTATCTCCCCAGCAGATCGCGTCCCTGCGGCAGCAGCAGCACTCTGGGTCGGGCCCTCCTCCCCTGCTGCTGGCCCCCAGAGCCTCGGTCCCCAACGTCCAGGTACAGGGCCAGAGGATCATCCAGCAGGGCCTCATCAGGGTAGCCAACGTCCCAAACACCAACGTCCTGGTCAACATACCACAgGGCTCTCAGAAGGGCTCGTCCGTGACGTCCCAGGCCGGGATGGGCAGCAGTGTGTCTACGGTCCAGGCCAATGAGTCCCCGGCTGCTCGCCAGGCGGCTGCCAAGCTGGCTCTGCGTAAGCAGCTGGAGAAGACCCTGCTGGATATCCCTCCTCCCAAACCTCCCGCCCCTGAATTCAACTTCTTGCCGTCAGCAGCCAACAACGAGTTCATCTACCTGGTGGGCCTGGAGGAGGTGGTGCAGAACCTGCTGGACACACTGGGACGGGGCAAGCAGCAGGGTCAGTCTGTTGCCCCGGAGACCCCCGTCCCCGAGGAGCCGCACACCTGCGCCCAGTGCAAGACTGACTTCACGTCGCGCTGGCGCTCGGAGAAGAGCGGCCCCGTCCTGTGCGACCACTGCATGTCGTCCAACCTGAAGAAGGCCCTGAAGGCAGAGCACACCAACCGGCTGAAGGCGGCCTTCGTCAAGGCCCTGCAGCAGGAGCAGGAGATAGAGCAGCGCATCCTCCATCAGGCCGCCTCTCCTGTCTCCAAaacaccctcctcttcctctgggaTGAAGAGTGAGCACCAGCAGCACGTGCTGGTGTCACAGCAGTACAAGCAGGCCAGAGCCCAACTTCAGCAGCAGCATAGAGGCACGCCTGTGGCCCGCCACCACTCCTCCATCAAGCAGagccctggtcaactgtCCCGTAGTGTGCAGCAGGCGGTGGGGTCTCGCGGTGTCAGTCACTCGTTCCCCACATCCTCTCAGCAGCTGCAGAACTCTGTGACGGCGGCCGCGCTGGCCAGCAGGCCAGGTAAGCATGCCATGCGCCCGGCGCAGGGGACAAAGggcagcagcagtaacccctcgGCCATCCCCAACGCCTGGAGGAAACAGACCACCGGGAACTCAGGTGTGACCATGGCATATGTGAACCCCAGCCTGTCTGTGAACAAGACCACCACCTCCGCCAACCTGGAGCGCCAGAGAGAGTACCTCCTGGACATGATCCCCTCCCGCTCCATCTCCCAGACAGCCAACACATGGAAATAACACCACCCCTCTATCAACCCTTATTATTAATCTGAATAATAGTCACTCATTATCAATTTAACAAAGGACTCCTCTCTGGAAAACAATTTCACATAATCTACCATTGACCAATGAAATAAAAACTAAAACGCACCTCTCCTTATGTTCTCTCCCTCCGCCATCTATCTTCCTGTGAGTCTTCAGTTCTAGTGTGGCGCACTGGTGTTGTACTGGGAGACTACAGGGCTCTGAGAGATGCTACATCTAAAAGGGTGGCATGGACTTAAACAATCTCAAACATTTATGGTGCCTCGCTTCCTTTCCTGGTCAGTTTTGATCTTCACACATTCACACCGAGAGGGAGGGATGTCCCAGTCCAGCTGTGTCTGTGGCTCTGATTGGCTATCCAGGTGACGCGACCGTCAACATTGTCCACTGTGAATGATGCGCCTTACTTCATCTCCCCCTTCTACCTGGGAGAGCCAGGACCGGGTCTCTCTCTGGCCTCAGTGGTAGCCTGGCATGGCTGGTGGCACAagactgcagacagacagatgtcgTGGCAGGGACTGTGGGTGATGCCTCGATCACACCGACGGTTTTATTGCATTTTgttacaccagaagtacattcatttccaatggaacactgcgtttgccttgcagcattgcgttgcagaggcagtttcAGTGCGCTCTGTGTGTTGCATACGTTGGATTTAACTTATGCGTCAAACTGTATGCATAGacagcttgacagaaatggtagcagacgGTGAATGTTGaatttttgttgcacacatatccagatgatgctgcgtactaATTTGCGCAATGACTATCGGTGTGATCAAGGTGTGAGCCTAGAGGACTATCCAAGGAATACTAAAATAGCTTCagctttgcaaaaaaaaaaagaaaagaagacTTTTGGAAGAAGAACAAAATCTATCCACCGAATAGACTGCCTTGTCTTTGAACCGACGGTGTGCAGAACAGAGGAGCAGCCCGGAGTGTGTCTGGTTATTTTGTATGGCTGAATGTTagaatattttttgtttgttttataagTCAAAAGATTCTGCTCCCTTCTATTTTGGAACTGGACTCTTTTGCGGAGGTCTCTGTTTGTTTGAAAGGTAACATTACTGTTGAGGTGGTTTTAcatctgttggtttagtgttTCATTTTGAAAGACTTTGTTTTCTAAGCTGAAAAAGGATTAAGTAACTAACTTAACTTTTTTAATATGTACAAACACAGAACACATTGTGGGAGGACTATTCTTGTAAATGGtgaaaaaaaactttaaaaaaactaaaaatgGAGCCTTCCAAAGAAATAGTGCAGCCCAAATGATCCTTTCATTCTACTCTTGTTTTAAATCCTTGATGTTCAAAATAGACAGGATGTGCTTTTTTTCCTGAAATGCAaaaggggaggggaaagggacTTCATTTTATGAAGCCATTTTGCTTTTAGTCATAGATTGTGGGACATTACTTTTCTTACAGACACATGCTGTGTCTGGGTATATTTATAGGGTCACTAGTTAAGATGTATGCTTATGCCCTCAGTTCCAATGGATCTCCACTTTAGATGATTTTCTTGTGTCCAGTGTTTTCTACGCGCGCCCATTCATTGGTCTAAAAAGCTGGACAGCTTTCAGAATGTAGTTATGCGAAACCCTAGAAACATTTATACTTTTATTTCTGTTTTCTTTTACAAGGGAGAGTATGAGTTATGTCAGATCCCTtaattagctagcttgctagcccatCTGGTGGAAATGCCAGCGGTATTGCATTTATATAGGTGGTGCAGTACAGGGTAAGAAAGTGTTGAAATATGCACCATGCTTACAAAGCTCCCTCGCAGAAGGAATAAGACGGTGCTGTGTCAGTATGAGGTCTTATGAGGTCGAGCTTCTGTATCCAAACATGGTTCAGAGCTACACAACAGTTCAGTGGCCTAATAGAAATTAAACTGAAAGGAAATTATCAAACAATGCTTTTAATTTAGGTTCTCTTGTTTATTTTTCCCCCCCTCCAACAAATGTGGAGTACATGCTTTCCCCTGATTTAATACGTTTTGatagcagtgtgtgtggtgttcCAGACCTCCGGATAAACCAAGTGTGTTTGTGTTAACAATGAGACACCGTAAGTGTTAATTAATAAAGTGCTGGTTCATACAGCAACTCCCCAGCTTGTCCTTTTCATATGAATCCCATTGTTTTCTGTAACCACCAAGCAATTTGGCTAATCTCCCATTGTTATAGATTTGCCCCACCCCCCTTCCATACCTACCCTACTATGAGATTTCAGAGAGATAAATGGGCTTTCATCTCTAACATATTtgccatatagtgcactacttaataGGGCTTTGGGtaaaagcagttcactatatggggaatagggtgtcatttgagatttGCCTGTTCATCTTCTGGAGCCCTGCTCAGAGCCATGATGGTTGGGGTCCTTGGCATGCGTTCCAGGCATAGAGAATGATCGAGGCCTCTAAGTCGCCAAAAGGCTGTATTAGCATGCAcagcgccattgagggcttccaccattttaatgtagtcaactcAGTGGGACTTCCAACttaattggctgatccctcctggtgacaTGTCCAACCGGGTTATCAGGAGGGATCAGCTAATCGTGAAGAAAAtaaattgactacttcaaaatggagatggcctcaatggtgCTGTCcatgctataatggcacagatataaagatgagtcctctgtctatctctggttCCAGGCTGCAGGTGCAGCAGCCATTAGTGTGCTGTCCTGACTACTGCTGTTTGACGACTAACACCATTCCGTTTTATCTGGGGTGCTAGCACTGTTTACCGTGTAGCGcctcaccctaaaaaaaaagttCCTATTTGTTTAGAATTGTTTTCTTGCTCTAtcaagtaaaaaataaacaatttaaccCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480268 lncRNA upstream 36612 61696887 ~ 61772270 (+) False G423907
TU480310 lncRNA upstream 42932 61763326 ~ 61765950 (+) True G423945
TU480264 lncRNA upstream 65029 61690708 ~ 61743853 (+) False G423907
TU480270 lncRNA upstream 65029 61696887 ~ 61743853 (+) False G423907
TU480265 lncRNA upstream 65029 61697136 ~ 61743853 (+) False G423907
TU480386 lncRNA downstream 45730 61886553 ~ 61960274 (+) False G424016
TU480387 lncRNA downstream 45730 61886553 ~ 61913740 (+) False G424016
TU480388 lncRNA downstream 45730 61886553 ~ 61927236 (+) False G424016
TU480389 lncRNA downstream 46147 61886970 ~ 61929755 (+) True G424017
TU480390 lncRNA downstream 46476 61887299 ~ 61954426 (+) True G424018
XM_021603725.2 mRNA upstream 15239 61786447 ~ 61793643 (+) False LOC110524251
XM_021603726.2 mRNA upstream 15239 61786447 ~ 61793643 (+) False LOC110524251
XM_021603727.2 mRNA upstream 15239 61786447 ~ 61793643 (+) False LOC110524251
XM_021603728.2 mRNA upstream 15239 61786447 ~ 61793643 (+) True LOC110524251
XR_005051827.1 mRNA upstream 153687 61637104 ~ 61655195 (+) True LOC110524248
XM_021603739.2 mRNA downstream 3193 61844016 ~ 62001312 (+) True yjefn3
XM_021603740.2 mRNA downstream 165479 62006302 ~ 62030169 (+) True cilp2
XM_021603742.2 mRNA downstream 227375 62068198 ~ 62072769 (+) True si:ch211-212d10.1
XM_021603753.2 mRNA downstream 442231 62283054 ~ 62327772 (+) False LOC110524265
XM_021603754.2 mRNA downstream 442233 62283056 ~ 62327772 (+) False LOC110524265
TU480287 other upstream 86858 61721537 ~ 61722024 (+) True G423922
TU478964 other upstream 1112977 60694257 ~ 60695905 (+) True LOC110524226
TU476694 other upstream 2864665 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 3392106 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 3909234 57884380 ~ 57899648 (+) True G419452
TU480458 other downstream 264700 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 442329 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 1204267 63045090 ~ 63051530 (+) True G425224
TU482675 other downstream 1835591 63676414 ~ 63684239 (+) True nfil3-4
TU483050 other downstream 2336205 64177028 ~ 64179386 (+) False sac3d1

Expression Profile