RNA id: XM_021603740.2


Basic Information

Item Value
RNA id XM_021603740.2
length 5270
RNA type mRNA
GC content 0.50
exon number 10
gene id cilp2
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62006302 ~ 62030169 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATAGGGACAGGAGCAGGCTTCCAACCAGCATCATCCACACCTGAGAACACTCAAAGATTCTGTAGCCGTCCcattttgaaaataaatacattttcctcTTGACTTGACACTATAATACAGAGAAAAAGAAGTCATCCAAGTTTGTGATTGTGAGAGGGACACCATGTGGGACTTTACAGAGATGACACTACTCCTGTCTTTCCTGGTGGCAGTGGCTGTGGCTCAAGGACCCATCTGGAACAGCTCTCTGTTTAAGAAGTGGAGCCAGACAGAAAGGAGCAGGAAGCTGGCCTACAACACACTGACCGAGCCACAGCAGACCACAGGTGTGACTGAATGGACGTCCTGGTTCAACATCGACCATCCAGGGGGGAATGGAGACTACGAGCGGTTAGAGGCCATCCGGTTCTACTAcagggagagggtgtgtgtccGGCCTGTGGCCATGGAGGCCCGCACCACTGACTGGGTAGCAGCAGCCGAGACTGGGGAGGTGACCCACTCCAGCCTAGAGAAGGGCTTCTGGTGCATCAACAAGGAGCAGCCCTACGGACGCATCTGCTCCAACTACCACGTCCGCTTCCAGTGCCCACCAGTTCAGGCCTACTGGACAGACTGGGCCGCCTGGGGAACCTGCTCTGCTACAGCCTGTAATGACGTGGGCATCCAGGTGCGCAAGAGGAAGTGTATGAGCATCCAGCCCCTGCCCCTGCTGCTGGTGCCCCCATGCCAGGGCCACCACACAGAGAGGACGGAGTGTGCCACCCCACCATGCGAAGCCAAGTGGACTCCTTGGAGTCCATGGGGAGCATGCTCGGTGACCTGTGGCAAGGGTCGCAGGATCAGGAGGAGGACCTGTGTGAGAACCTCtgtaacagtgcagtgtgtgGGACGAGCGGCGGAAATCCAGAAATGTGGGAAAAATCCATGCCCCCCACCCAATTGTAATCGCGAGTGTCCCAAAGGTCGGCCCAGTGAGGACTGCAgtcgctgtgtgtgtgagggccaCGTGCTCCAGGGAGAGGTCCTCAGTATGTCCGGTGTCCCTGTAGCGGGGGCCAGGATAGCGCTGGCCAGCCAGCCCAAGATCATCCATGCCCGTACTGACTCCAAGGGCCTCTTCAGACTCCCAGGGGTCTGCTCCAGCTCCCCCACCCAGCTCTACATTCACAAGGAGAAGTTTGCCCCCGTTACCATCTCCACCTCCAGCAACAGCACTGGGTCATCCTGGGTACGGGTGGTTCTAAAGTCTGCAGAGAAGCCATATGTTGTAAAGCACCCGGAGGACAAAGTGCGCTACGAGGGACAGCGTGTGATGTTGTGCTGCAAGGCAACAGGGTCGCCCATGCCTGACAAATACTACTGGTACCACAATGGGACCCTACTAGATAGGAATGTGTTTAAATACGAAGAGGATCTGCTGTTGAGAGGCCTGAAGCCAGAGCAGACTGGACATTACTACTGTAAAGCCAGCAGCCAAACAGGCAGCAGCAAGTCTTCACAGGCATTCCTCACTGTTATCGCTAAAGGCGCACCGGCATGCAACCCCACTCCTGAGAACCACCTCATCAGACTGCCCATGGACTGTGTTCAGCCTGGGACGGACTCTATGTTATACAACGCCGGCCGCTGCCCCCACAACAAGTGTGCAGGCTCCCTGGACTTTGACCTGCGCTGCAGGGATGGAGGTGGCTACTGCTGTGGGGTCCAGAAGATGGAGAGCCGGGTAATAGACTGTGGGAGCTACAGCCTGCCCATCAAAGCGGTAACTGAGTGTGGCTGCCAGAAGTGTGTAGTGCCCAAGGTGCTGGTACGTGGCAGGGTGGTCACAGCAGACAACGATGAACCACTGCGTTTTGGGCACATGTACATTGGCAAGGAGAGAGTAGGCACCACAGGGTACAAAGGAGGCTTCACACTCAATATaaccccagacacagagaggctAGTAGTCAACTTTGTGGATCCCACACAGAAGTTCATTGACACTCCTAAGGTGTTTATCTTCGACAGGAGAGGGGGGTCTGTTTACCATGACGTGAAGGTGATGAGAAAGCAGGAACCTATTGATATCAATGCTGGAGAGACAAATACCATTGACTTAGGAGAAATTAAAGGGGAGGACCCTATTGGACAGATCATCATACCTCCAAATTCTTTCCACAGgaataatggagaggtgtacaaAGGTACAGTGAAAGCCAGTGTCACCTTCATTGACCCCAGGAACATCACCACAGCTGCTGCCGCTCCTGGTGAGCTCAACTTTGTGGACGATGAGGGTGACATGCTTCCACTGAGGACATATGGGATGTTTTCTGTTGACTTCAGAGATGAGGCGAACCAGGAAGTCCTGGGGGCTGGAGCGGTCCAAGTACTCCTAGACACACAGCACGTCAAAATGCAAGCTCACATTCCCAAAATGAAACTGTGGTCCCTCAACCCAGACACAGGTatctgggaggaggagagtgacTTTCACTACACTCAGACCACATCTGGTGGTAATGGGAGGAGCAAGCGAGAGGAGCGCACTTTCCTCATAGGTAACATGGAAATCAGGGAGCGTCGACTTTTCAACCTGGACGTGCCTGAGAACCGCCGCTGCTACGTCAAAGTGCGGGCGTACATGAATGACAAGTTCCTGAACACTGAGCAGCTGGAAGGTGTGGTCATCAGCCTGATAAACCTGGAGCCCAAGCCTGGCTTCTCCTCTAACCCCAGAGCATGGGGTCGCTTTGACAGTGTGATAACCGGACCCAATGGAGCCTGCCTGCCAGCCTTCTGTGATGCCCAGGTGCCTGATGCTTACACAGCTTATGTCACAGGAGTTATGGGTGgtgaagagctggaggcagctcCCTCAACCCCAAAGATGAACCCAAACATCATTGGAGTGTCTCAGCCATACTTAGACAAGATAGACTACCAGCGATCAGACCACGATGATCCAGCTCTCAAGAAAACAGCCTTCAGAATCAACTTGGCAAAACCCAACCCCAACAATGTGGAAGAGACCAATGGACCAATATACCCCTATCAGAGTTTAATAGACTGTGAAAATGCTGGAGTCGATGCCAACCACTTCCGATTCTTCAGAGTGGAAAAGGACAAGTACGAATACAATGTTGTGCCCTTCCAAGAGAACGACTTAACATCGTGGACGGGTGACTACCACTCCTGGTGGCCCAACCCTCAGGAGTTCAGGGCTTGCTACATCAAGGTCAAGATCCAGGGGCAAAAGGAGGTCATGATAAGGTCACAGAACCATGGAGGCACCCACCCTGAGACCGCAGGTCAGCTGTACGGTATAAGAGACATCCGCAGCACCCGTGACATGCATGTGGCCAACACCTCCGCAGCTTGCCTCGAGTTCAAGTGCAGTGGTATGCTCTTCGACCAAGCCGCAGTCGACAGGTCCCTCATATCAGTCCTCCCACAGGGAAACTGTCGGAGAGTGGGAGTCAACAGCCTGCTAAAGGAGTACCTGACCAAGCACCCCCCTACCTCACCGAACAACGAGTCCCATGCCTTCAACATGCTGGGCCCTGTCGACCCCTTGGGGCACAATTATGGCATTTACACGGTCACAGACCAGAACCCTAGGGTGGCAAAAGAGATCGCCATCGGACGCTGCTTTGACGGTACCTCTGACGGGTTCTCCAGGGAGATGAAGTCAGACACTGGAGTTGCTCTGACCTTCAGCTGCCCAGAAAGGACTGTGACCAGGGAGAGTCTCTTCCAACGCCTCCAGACGAACCCCAGCCAGACTCTTTCTCAGATGGCCCGGGACATGCGGGAGGCGCAGGGGCTGCAGGTCCGGGGAAGGTCCTCCCGGGTGGTGACCTACCCCTCTGGTTCCAGCAGCCGCAGATCCAGCTCCTCTACCAGGAGAAGATCCACGATGCGTGCACAGGACAGGCAGTAGATCTGCCGTTAAGTCTTTGGGTTGGAAATAAAGAAGATGGTGTCCTCACAACCAAATAATGAAATGTCAAGTTGGGTCAGCTTGGTGATGTTGGATGTGAACTTTCTCTGAACAGCACGGTACTCTATTGAAACAGTAACCATTCCGGCAAAATCACACGGAGGAGAGAAATTAAGACATGTATTTTCTCTGAAACTTACTTGAAGGGTTTGGCAATAAATATCAATATTAATTTTATTATTTGAGAAGAACTACATTTCTTTAGCTTTCATCAGTCCAGCAAAGGACATTAATTTAATTGGCGTTAATAGGCTTTTATGAAGGAAACAACAAAATCCATTTCTGAGAAATCAAGTTTATTTTTGGATTTGTAGCGTTCCACATTAACCATTGTGGCCGTCTTTTCTGATGTCTATGATCGCATGAGTTATAACCAACTGTAAAAGCCAGTCTAAATGCTAAACACTTCCTAATTGGCCAAAGCTTTCCATTGTACTCACGAGTCCCTCAAAATCTGAGGAACATCAGGTCCTAGTGATCCAGTCTGTTTGTAACAGACAGTGGGCCCCTTTTCTAGAAACCGGGAAGTATTCTCTGCCAAGAAGAGGCCTATTTAAGATGCATTGGGGTGTAAGGAATTATCGCGTCCGTGGAACAGAGAACGCTTTTTAGTACCCTTGTTTctaggtttaaaaaaaattatatttagcATGTTACATTGCCAACTGCGATCCAGACAAACTTTACTGTAACTTAACTACAACATGCATCAGGACCCTAGCCAAGACAAGCATCCCTTAACGGATCTCACCAGTAGACTAAACAGAGCCTGCGGTATGGGACCTGGGAGAAGAGATTGTGAGGAATGACACAATTACCTTCAGCCCTCACTTCCCACAAAGTCCCCAAGTACTCATCcaacacacctctctctgtctgttcttcaACATCCCTTGTACGTTACTGTCAGGAATgtaaaaaacaaataaacaacagACATGAAACCCCTATTTATACATAGCAGAGAATTAGCTAGACTAATTCTGAGACTGTATTgttgtttggtgtggggggatgTCTGTCTTTGTCTTATGAAGTGCAATAGCTATATTCCATTTTGACTTGAGAGCCCTTGCAAATCATCATGTGACAAGCCAATATACTGTACTTCGTACTGCTGGTAAATAGGGTAAATCCTTCAGTATACAGTGTAATCGGAAAGTTTtaagacctcttgactttttccatattttgttacgttacagccttattgtaaaattgattaaattacattttttcctcatcaatctacacacaatgcccaatTATAACAAAgccaa

Function

GO: NA

KEGG:

id description
K24436 CILP; cartilage intermediate layer protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480386 lncRNA upstream 46028 61886553 ~ 61960274 (+) False G424016
TU480384 lncRNA upstream 46788 61888437 ~ 61959514 (+) False G424016
TU480390 lncRNA upstream 51876 61887299 ~ 61954426 (+) True G424018
TU480397 lncRNA upstream 62073 61938553 ~ 61944229 (+) True G424025
TU480391 lncRNA upstream 69915 61895428 ~ 61936387 (+) True G424019
TU480439 lncRNA downstream 16856 62047025 ~ 62047292 (+) True G424061
TU480417 lncRNA downstream 56653 62086822 ~ 62090999 (+) True G424041
TU480456 lncRNA downstream 72027 62102196 ~ 62102397 (+) True G424077
TU480459 lncRNA downstream 77435 62107604 ~ 62107883 (+) True G424080
TU480460 lncRNA downstream 78390 62108559 ~ 62108771 (+) True G424081
XM_021603739.2 mRNA upstream 4990 61844016 ~ 62001312 (+) True yjefn3
XM_021603733.2 mRNA upstream 165479 61808882 ~ 61840823 (+) False gatad2ab
XM_021603742.2 mRNA downstream 38029 62068198 ~ 62072769 (+) True si:ch211-212d10.1
XM_021603753.2 mRNA downstream 252885 62283054 ~ 62327772 (+) False LOC110524265
XM_021603754.2 mRNA downstream 252887 62283056 ~ 62327772 (+) False LOC110524265
XM_036978020.1 mRNA downstream 252887 62283056 ~ 62327772 (+) False LOC110524265
NM_001160487.1 mRNA downstream 414506 62444675 ~ 62449760 (+) True LOC100301654
TU480287 other upstream 284278 61721537 ~ 61722024 (+) True G423922
TU478964 other upstream 1310397 60694257 ~ 60695905 (+) True LOC110524226
TU476694 other upstream 3062085 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 3589526 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 4106654 57884380 ~ 57899648 (+) True G419452
TU480458 other downstream 75354 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 252983 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 1014921 63045090 ~ 63051530 (+) True G425224
TU482675 other downstream 1646245 63676414 ~ 63684239 (+) True nfil3-4
TU483050 other downstream 2146859 64177028 ~ 64179386 (+) False sac3d1

Expression Profile