RNA id: XM_021603741.2


Basic Information

Item Value
RNA id XM_021603741.2
length 2530
RNA type mRNA
GC content 0.42
exon number 3
gene id si:ch211-212d10.2
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62033465 ~ 62037994 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCTCTGGCCAATCGCTTGACCTGCGTCTTGAAATCATAGGCTGTTCTAATGTTCTGATGAACGCGGATGACATGACAAGACTACCGGATCCCGATGCCAGTTAGTTTTATGTTATTGAATATGCTCACATAAAACAGTCAATTCTAAAATGCGCAGTCAGTAGGCGGTAAATGCTTTATAACGAGTAGTGCAAATAACGGATATTCCCAATTTATTTAAATGGCGTCTGGGAATGAAGAGGAAAGTGCGGGTAGCGTTTCATGGAGGCTAATAGGCCCAGCCTCTGAGCTTTCCAAGAAGCAGTGCCGTTTGATGCACTCCTCCCTCGGCTACGGCTCCGATGTTTGCCTGTTCTACGTGAAAGGGGAATTCTTCGCCATGGATGCTCGCTGCGCTCACTCCGGTGGTCCGCTGTGTGATGGAGACATTGAGGATGCAGATGGTATTCTGCAGGTCTTCTGCCCCTGGCATGACTATGACTTTAACCTCAGGACAGGACACTCAGGGACTGGTTTACAGCAACAAGTGTACAAAGTCAAATTGGAGGATGGCAGTGTGTATGTGAAGCACGCAAGCCCTCTCTCCTTACAGACCTTCCCATCAGGCAAGAAGAACTGAACTGCTGCCTAAAACCTGTTGTAAGCCTGGGCAATCCATATGGAATGGCCTGTAGCAATACTGGCAATTCTTTCAGATTTATTCTACAAACCCAAGCCATCTGAGGCATTCCTTGCCTTATATGATCATCACAGACCTTTTTCCACTCGGATCTGGCAATGTTGTACCCTGGGTCATTATCAAGAGGATCGTCTGAAGGGAAGAGATATGACATCATCTTTTTGTTTGAGGTTTTTGTTGTCGGAGACACTGGGACGTTAGCCATCTGCTGGCAGTGAAATAGAGAAGAGGTTGAAGGGCCACTGCTGATCTTGATAACCGATcagacattcaacagacattATGTATTAGCCACTGCTCAACTTAAGTACATTTTCATTCTTCCCTTCCCTCAATATATCACAAATCCTTACTCTTATGAAATCTGTGGAGGTTTACAAATATTGTGTGTTCTAAATGATATGTCTAATATGTACATCTGACTGGTGCGTTAGGGGCTACTGGGAATATAGATCATTTTAGTAGAGAAGTGTCAACAGCCCGTCGTCACACCTTTAAAATGCATTACTGTAAGGTGCAAGAGTATAATTACTGGAACTGATGTGATGTAATTGAGGTTCAAAACATGGTCCCAAATTTGAAATGCCCTTATATGCGAAGCTTTTCATTATTTGACCTCAACCGTTTAACAGCGAACATATACCAACAGCCTAAACACTGCCCAGTATCCCAGGTTCACCTCTGGTGAATGATAATAGCTACTGTAACGTTACAGCTACAGTAAAACATCTATTCATTTTGCTGAGTGGTGAGGTTTTGAATGGAATAAAGTGATCCCTGCAGTAgcccagagagagaatagaaaccACAGCTCAGCTATATGACACCCACCTAAACTGGTGCCTGCCATTTGTAGTACCTAGCTGAGATCCAAGGGAACACACATGAAGGGTCCTGTAATTATTACTGGTTATGGTCCAGTAATGAGTATTTATTAAAGCCTTGTCAGCATTTCCCCTTTGGCCGATGCACAGACGTGTTCTTCCCTACTGACGCAAAGGGAAGACTGGTCAACAGGCTGCAGAGCAGACTCAGGACTGAAATGCACTATTCAGTCAAGAGAAATGTGTTATTGTAGCTACTTGTGTTTTTTATGCCTCCTCTTCACCTACACTGGCCACAACATTCACTACATCTTCTATCCACTACATGTTCTCACTCTGACATTACAGAGATTGCCAAAAAGGTGTCAGTAAAAGTGTGGCTTGCCATTCTAGTTTTCCCACCTCATAGCCTTTCCTGTTGTGCGACTTTTTACAATAATATTTCCATTGGTGTCGAGTGCTGTGTGGATAGGACCTGTGCCTCGTGTTTAATTATTCATCACCTGAGGGGTAATATTcactgacaattgagatgcagCCATTGTGTGTTTTGGTAGAACAATCACCTTCTACTGGGTCTGGCGTGCACAGTCCATGAGTGGTTTTCTCATTTTGTGGATCCAGACGTTTCCTAGTAATCGGTTTATTGTACTGGATTGCATTCACAAGTTGTCCTTAGACATTAGAGGACCCATCGTTGATGTCAGAACTTTTCAATGTAGGCTATTACGTAATGTTTGTCTCTCATATGCAAAGCTctatatttagttttttttactaCTGTTTCAAATGTATATGCCTGTCATTAAGCTGCTTATATGGTTTTTCATACCATTCTATATTCATTGTTATGACTGTCTTGTTATTGATGTGGATGTTATGAATTATGCAAACTAAGTTATCCCTTCATTTTGTGTTTTATTTAAATGTCATCTCACGGTACGTCACGTCTCAGTACTACAGTAAAATGGAATATGTCCTTTTCCTGATGACtttttttctaaataaaataTGTTTCCAGCGCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481117 lncRNA downstream 60848 61967747 ~ 61973241 (-) True G424666
TU481115 lncRNA downstream 89835 61938553 ~ 61944254 (-) True G424664
TU481100 lncRNA downstream 100354 61896476 ~ 61933735 (-) True G424650
TU481095 lncRNA downstream 115883 61888198 ~ 61918206 (-) False G424649
TU481093 lncRNA downstream 119132 61888198 ~ 61914957 (-) False G424649
TU481172 lncRNA upstream 8842 62046836 ~ 62047291 (-) True G424719
TU481174 lncRNA upstream 14917 62052911 ~ 62054066 (-) True G424721
TU481188 lncRNA upstream 59910 62097904 ~ 62098122 (-) True G424735
TU481204 lncRNA upstream 179517 62217511 ~ 62231286 (-) True midn
TU481260 lncRNA upstream 214077 62252071 ~ 62252271 (-) True G424804
XM_021601328.2 mRNA downstream 191362 61841561 ~ 61842727 (-) True tssk6
XM_021603729.2 mRNA downstream 247547 61763118 ~ 61786542 (-) True LOC110524252
XM_021603730.2 mRNA downstream 247735 61763118 ~ 61786354 (-) False LOC110524252
XM_021603723.2 mRNA downstream 354983 61660149 ~ 61679106 (-) True LOC110524249
XM_021603720.2 mRNA downstream 411734 61617987 ~ 61622355 (-) False LOC110524247
XM_021603746.2 mRNA upstream 38575 62076569 ~ 62083301 (-) False LOC110524260
XM_021603747.2 mRNA upstream 38575 62076569 ~ 62083301 (-) False LOC110524260
XR_002473566.2 mRNA upstream 38575 62076569 ~ 62083302 (-) False LOC110524260
XR_002473567.2 mRNA upstream 38575 62076569 ~ 62083302 (-) True LOC110524260
XR_002473564.2 mRNA upstream 46459 62084453 ~ 62092024 (-) False cirbpb
TU481131 other downstream 32780 61998526 ~ 62001309 (-) True G424678
TU481096 other downstream 106667 61888198 ~ 61927422 (-) False G424649
TU481097 other downstream 120320 61888198 ~ 61913769 (-) True G424649
TU480929 other downstream 374504 61659033 ~ 61659585 (-) True G424502
TU480919 other downstream 382314 61649967 ~ 61651775 (-) True G424499
TU482117 other upstream 765944 62803938 ~ 62808122 (-) True LOC110524277
TU482168 other upstream 812010 62850004 ~ 62850247 (-) True G425612
TU482212 other upstream 856665 62894659 ~ 62900503 (-) True G425647
TU482441 other upstream 1221654 63259648 ~ 63260469 (-) True LOC110524282
TU482381 other upstream 1262930 63300924 ~ 63303394 (-) True G425810

Expression Profile