RNA id: TU481132


Basic Information

Item Value
RNA id TU481132
length 3090
lncRNA type sense_over
GC content 0.41
exon number 3
gene id si:ch211-212d10.2
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62033465 ~ 62037994 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGGATGACATGACAAGACTACCGGATCCCGATGCCAGTTAGTTTTATGTTATTGAATATGCTCACATAAAACAGTCAATTCTAAAATGCGCAGTCAGTAGGCGGTAAATGCTTTATAACGAGTAGTGCAAATAACGGATATTCCCAATTTATTTAAATGGCGTCTGGGAATGAAGAGGAAAGTGCGGGTAGCGTTTCATGGAGGCTAATAGGCCCAGCCTCTGAGCTTTCCAAGAAGCAGTGCCGTTTGATGCACTCCTCCCTCGGCTACGGCTCCGATGTTTGCCTGTTCTACGTGAAAGGGGAATTCTTCGCCATGGATGCTCGCTGCGCTCACTCCGGTGGTCCGCTGTGTGATGGAGACATTGAGGATGCAGATGGTATTCTGCAGGTCTTCTGCCCCTGGCATGACTATGACTTTAACCTCAGGACAGGACACTCAGGGACTGGTTTACAGCAACAAGTGTACAAAGTCAAATTGGAGGATGGCAGTGTGTATGTGAAGCACGCAAGCCCTCTCTCCTTACAGACCTTCCCATCAGGCAAGAAGAACTGAACTGCTGCCTAAAACCTGTTGTAAGCCTGGGCAATCCATATGGAATGGCCTGTAGCAATACTGGCAATTCTTTCAGATTTATTCTACAAACCCAAGCCATCTGAGGCATTCCTTGCCTTATATGATCATCACAGACCTTTTTCCACTCGGATCTGGCAATGTTGTACCCTGGGTCATTATCAAGAGGATCGTCTGAAGGGAAGAGATATGACATCATCTTTTTGTTTGAGGTTTTTGTTGTCGGAGACACTGGGACGTTAGCCATCTGCTGGCAGTGAAATAGAGAAGAGGTTGAAGGGCCACTGCTGATCTTGATAACCGATcagacattcaacagacattATGTATTAGCCACTGCTCAACTTAAGTACATTTTCATTCTTCCCTTCCCTCAATATATCACAAATCCTTACTCTTATGAAATCTGTGGAGGTTTACAAATATTGTGTGTTCTAAATGATATGTCTAATATGTACATCTGACTGGTGCGTTAGGGGCTACTGGGAATATAGATCATTTTAGTAGAGAAGTGTCAACAGCCCGTCGTCACACCTTTAAAATGCATTACTGTAAGGTGCAAGAGTATAATTACTGGAACTGATGTGATGTAATTGAGGTTCAAAACATGGTCCCAAATTTGAAATGCCCTTATATGCGAAGCTTTTCATTATTTGACCTCAACCGTTTAACAGCGAACATATACCAACAGCCTAAACACTGCCCAGTATCCCAGGTTCACCTCTGGTGAATGATAATAGCTACTGTAACGTTACAGCTACAGTAAAACATCTATTCATTTTGCTGAGTGGTGAGGTTTTGAATGGAATAAAGTGATCCCTGCAGTAgcccagagagagaatagaaaccACAGCTCAGCTATATGACACCCACCTAAACTGGTGCCTGCCATTTGTAGTACCTAGCTGAGATCCAAGGGAACACACATGAAGGGTCCTGTAATTATTACTGGTTATGGTCCAGTAATGAGTATTTATTAAAGCCTTGTCAGCATTTCCCCTTTGGCCGATGCACAGACGTGTTCTTCCCTACTGACGCAAAGGGAAGACTGGTCAACAGGCTGCAGAGCAGACTCAGGACTGAAATGCACTATTCAGTCAAGAGAAATGTGTTATTGTAGCTACTTGTGTTTTTTATGCCTCCTCTTCACCTACACTGGCCACAACATTCACTACATCTTCTATCCACTACATGTTCTCACTCTGACATTACAGAGATTGCCAAAAAGGTGTCAGTAAAAGTGTGGCTTGCCATTCTAGTTTTCCCACCTCATAGCCTTTCCTGTTGTGCGACTTTTTACAATAATATTTCCATTGGTGTCGAGTGCTGTGTGGATAGGACCTGTGCCTCGTGTTTAATTATTCATCACCTGAGGGGTAATATTcactgacaattgagatgcagCCATTGTGTGTTTTGGTAGAACAATCACCTTCTACTGGGTCTGGCGTGCACAGTCCATGAGTGGTTTTCTCATTTTGTGGATCCAGACGTTTCCTAGTAATCGGTTTATTGTACTGGATTGCATTCACAAGTTGTCCTTAGACATTAGAGGACCCATCGTTGATGTCAGAACTTTTCAATGTAGGCTATTACGTAATGTTTGTCTCTCATATGCAAAGCTctatatttagttttttttactaCTGTTTCAAATGTATATGCCTGTCATTAAGCTGCTTATATGGTTTTTCATACCATTCTATATTCATTGTTATGACTGTCTTGTTATTGATGTGGATGTTATGAATTATGCAAACTAAGTTATCCCTTCATTTTGTGTTTTATTTAAATGTCATCTCACGGTACGTCACGTCTCAGTACTACAGTAAAATGGAATATGTCCTTTTCCTGATGACtttttttctaaataaaataTGTTTCCAGCGCGATCATTGATACGTAAATGTATCAAATCAGGACATAATATCACCAGAAAAGTCAAAGGTTTATTTACAATTCCTCATACATTTAGTAAATGTTATACAATACACAATTTACACATAAAAACCATATGAAAAAGAAAAACAAATGGGCAACGCCATGCAATACATGTTACATAATGATTTACAGAGAATTCTCAGGAATTGATTTATATAATGTGTTGATGGGGGCCCAAGACTTCTCCCAGAGCACAGTGGCAACTATACAAGTCTCTCTTTATAGGCTAGGCAATGGTGGAAATATCCATTGCTCGCTTCACCAGAGGATATTCCAAAATAAGTTAGTCTCCCTCAGAGCAGCCAGAcagtacaggagaggacagatGCATGCACTCATCATGCTGATGGCACAAGCACACTCGGAAAACAACCCGAGGCCAAGGCAGGGCTGTATAGTGTCTAGTATTTCGACAGGACGAGTAGTAATACAAGACTGCTGAATTGCAATGGAGAAATGGTGAAAACCAGGAGAAAATGTGAATTGTTATTTAATCACTTATGTGAATTGTGAAGCATGGGCCTGTCTTGGAATTGTTAGAACCTGAAACAGTATCTGGAGTCATAGGGAATCAT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481117 lncRNA downstream 60224 61967747 ~ 61973241 (-) True G424666
TU481115 lncRNA downstream 89211 61938553 ~ 61944254 (-) True G424664
TU481100 lncRNA downstream 99730 61896476 ~ 61933735 (-) True G424650
TU481095 lncRNA downstream 115259 61888198 ~ 61918206 (-) False G424649
TU481105 lncRNA downstream 118696 61895008 ~ 61914769 (-) True G424654
TU481172 lncRNA upstream 8906 62046836 ~ 62047291 (-) True G424719
TU481174 lncRNA upstream 14981 62052911 ~ 62054066 (-) True G424721
TU481188 lncRNA upstream 59974 62097904 ~ 62098122 (-) True G424735
TU481204 lncRNA upstream 179581 62217511 ~ 62231286 (-) True midn
TU481260 lncRNA upstream 214141 62252071 ~ 62252271 (-) True G424804
XM_021601328.2 mRNA downstream 190738 61841561 ~ 61842727 (-) True tssk6
XM_021603729.2 mRNA downstream 246923 61763118 ~ 61786542 (-) True LOC110524252
XM_021603730.2 mRNA downstream 247111 61763118 ~ 61786354 (-) False LOC110524252
XM_021603723.2 mRNA downstream 354359 61660149 ~ 61679106 (-) True LOC110524249
XM_021603720.2 mRNA downstream 411110 61617987 ~ 61622355 (-) False LOC110524247
XM_021603746.2 mRNA upstream 38639 62076569 ~ 62083301 (-) False LOC110524260
XM_021603747.2 mRNA upstream 38639 62076569 ~ 62083301 (-) False LOC110524260
XR_002473566.2 mRNA upstream 38639 62076569 ~ 62083302 (-) False LOC110524260
XR_002473567.2 mRNA upstream 38639 62076569 ~ 62083302 (-) True LOC110524260
XR_002473564.2 mRNA upstream 46523 62084453 ~ 62092024 (-) False cirbpb
TU481131 other downstream 32156 61998526 ~ 62001309 (-) True G424678
TU481096 other downstream 106043 61888198 ~ 61927422 (-) False G424649
TU481097 other downstream 119696 61888198 ~ 61913769 (-) True G424649
TU480929 other downstream 373880 61659033 ~ 61659585 (-) True G424502
TU480919 other downstream 381690 61649967 ~ 61651775 (-) True G424499
TU482117 other upstream 766008 62803938 ~ 62808122 (-) True LOC110524277
TU482168 other upstream 812074 62850004 ~ 62850247 (-) True G425612
TU482212 other upstream 856729 62894659 ~ 62900503 (-) True G425647
TU482441 other upstream 1221718 63259648 ~ 63260469 (-) True LOC110524282
TU482381 other upstream 1262994 63300924 ~ 63303394 (-) True G425810

Expression Profile