RNA id: XR_002473567.2


Basic Information

Item Value
RNA id XR_002473567.2
length 1762
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110524260
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62076569 ~ 62083302 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTAATATTAATAAGATGGGCGTAACCGCAAAGGTCTCATCAATACATAAACCAGGAGGCCCCGCAACTCATTCGTTCCCATCTACTGCAGGTTCGTCGGAAGAGTCTCACGGTGTTTGTCGGCGTGGTTAAAAGGAAGGATGTCTGACGAAGGGAAGCTTTTTGTGGGTGGCCTGAGCTTTGACACTAATGAACAGTCATTAGAAGATGTGTTCTCCAAATATGGGCAAATATCTGAAGTTGTTGTAATTAAAGACAGGGAAACTCAGAGGTCCAGGGGCTTTGGTTTCGTCACCTTTGAGAACCCGGATGAGGCCAAGGATGCTATGCTGGCCATGAACGGCAAGTCACTTGACGGCAGACAGATCCGTGTCGACCAGGCTGGCAAGTCTGGCGGTGGTGGCAGGTCCGGGGGCGGATTCCGAGGGGGCTCGTCGGGTGgcagaggtggtggaggaggatttTTCCGTGGAggcagaggtggtggtggtggtggaagagGTGGTGGGGAGCGGGGATATGGCGGTGGACGTTACGACAACAGAAGTGGTGGCTCATACGGATCAGACCGAGGCTACTACAACAAAGACAGAGCGCAAGGAGGAGGATACGGAGATCGTTCTGGAGGCGGTGCTGTTCTCTGGTGCACAGTGAGGCTGCCTCCTGTAGTTGAAATATGTTGAACTGAAGAAACAATATGTTGATGCCCCAGTTTAGCACTGCAAAATGCCAAGGTGACGAGGGCGGCTGGTAGGACGGAGACGACCGGACTGTCTGTCGTCTGGGCACGGCCCCTGGCAAGGCCTGGTCCCAGCCCAGGGCTTGCTGCTCCGCAACACTTTAAATCTTCTGAAACCGACCATGTAGATAAGAGCAGTCCTGGATAAGTGCGGGGAGGGCTGGCTCGCACTCCGAGCCTCCCACCACTGGTCTATTCCAAGTTTTTGTTTTTTAACTTTCTGGTTCTCCTTATTTGTTATTGAAAACTGCAGAGAACTACTTTTTAATTTACAGTTTTTGTGGGTAGCTCGAAAGAGCAAGGCTCGTGCTGTAGGCCGTTGCCTCACTTTGGGCCGTGCACGCAAAGAGGCACAACCTAAAAGACAAGGAATATATCTTGGATAGATAATGTTAACGCTTTTGTAGTTTTAACTCTGCTTTGTAACAAAGTACAAAAATGCTTGCACTTATTTTGTTTATGATTGACTGTTTTGCCAACTGATAATGGTGATGAGCCTGAATGAGGTAAATGCACACAAAGGTCTGAAACCATCACCACCATGTCTGCGCTGTTCTTCCTGACTGAGAGAGGAGAGTATGAGTAGAGACGTTCTCTAATCGACTGGGCTTGCTAGGATCGCTGTGGGTTCCGGTAAATGAGAACTTACTCATTGGTTTTCTGGAGCACTGACCTGTTGCTTGACTGTCCTGTCTATGGCAGGTTCTTGTCTAATTTATTTTGGTTTCTACTGAGaatggtttttattttattagctGCACATTTTAAataaggaatgttttttttttttgtgtatctGAGTCACACAATGGTTTCAAGTACACACAGCGCTGAATTAATGTGAAGCGGGACAGTTCTACTACTTGCAAGCTCTTTTCAACAAACATACTTTCTATGAGGATACAAATAGTGATTTCACAACTGTTCTCGTCATAGCATCAGATTGGTTTTGTATTAGATTTTTTTAAGCGTTCTGTATCTTCATGGTTGTATTTTTcctaaataaaaaatttaaaaaacatt

Function

GO: NA

KEGG:

id description
K13195 CIRBP; cold-inducible RNA-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481174 lncRNA downstream 22503 62052911 ~ 62054066 (-) True G424721
TU481172 lncRNA downstream 29278 62046836 ~ 62047291 (-) True G424719
TU481132 lncRNA downstream 38639 62033465 ~ 62037930 (-) True si:ch211-212d10.2
TU481117 lncRNA downstream 103328 61967747 ~ 61973241 (-) True G424666
TU481115 lncRNA downstream 132315 61938553 ~ 61944254 (-) True G424664
TU481188 lncRNA upstream 14602 62097904 ~ 62098122 (-) True G424735
TU481204 lncRNA upstream 134209 62217511 ~ 62231286 (-) True midn
TU481260 lncRNA upstream 168769 62252071 ~ 62252271 (-) True G424804
TU481262 lncRNA upstream 171100 62254402 ~ 62255328 (-) True G424806
TU481263 lncRNA upstream 172217 62255519 ~ 62255787 (-) True G424807
XM_021603741.2 mRNA downstream 38575 62034089 ~ 62037994 (-) False si:ch211-212d10.2
XM_021601328.2 mRNA downstream 233842 61841561 ~ 61842727 (-) True tssk6
XM_021603729.2 mRNA downstream 290027 61763118 ~ 61786542 (-) True LOC110524252
XM_021603730.2 mRNA downstream 290215 61763118 ~ 61786354 (-) False LOC110524252
XM_021603723.2 mRNA downstream 397463 61660149 ~ 61679106 (-) True LOC110524249
XR_002473564.2 mRNA upstream 1151 62084453 ~ 62092024 (-) False cirbpb
XR_002473565.2 mRNA upstream 1151 62084453 ~ 62092024 (-) False cirbpb
XM_021603744.2 mRNA upstream 3511 62086813 ~ 62092023 (-) False cirbpb
XM_036978019.1 mRNA upstream 4495 62087797 ~ 62090951 (-) False cirbpb
XM_021603743.2 mRNA upstream 4496 62087798 ~ 62092024 (-) True cirbpb
TU481131 other downstream 75260 61998526 ~ 62001309 (-) True G424678
TU481096 other downstream 149147 61888198 ~ 61927422 (-) False G424649
TU481097 other downstream 162800 61888198 ~ 61913769 (-) True G424649
TU480929 other downstream 416984 61659033 ~ 61659585 (-) True G424502
TU480919 other downstream 424794 61649967 ~ 61651775 (-) True G424499
TU482117 other upstream 720636 62803938 ~ 62808122 (-) True LOC110524277
TU482168 other upstream 766702 62850004 ~ 62850247 (-) True G425612
TU482212 other upstream 811357 62894659 ~ 62900503 (-) True G425647
TU482441 other upstream 1176346 63259648 ~ 63260469 (-) True LOC110524282
TU482381 other upstream 1217622 63300924 ~ 63303394 (-) True G425810

Expression Profile