RNA id: XM_021603743.2


Basic Information

Item Value
RNA id XM_021603743.2
length 1153
RNA type mRNA
GC content 0.49
exon number 6
gene id cirbpb
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62084453 ~ 62092024 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGACCTGTGAACAGCAGCAATACCCAACAAAGCGTCTAGTATACCGGAAGACcacacgaagaagaagaagagctcATAAACAGGAGCCATTTTAACATCTTTCTCAGACGGCGCCAAACTACACAGAGATAATCCAAGATGTCTGACGAGGGGAAGCTTTTTGTTGGAGGATTGTGTTTTGACACCGATGAAACTTCACTGGAAGAGGCGTTTTCAAAATATGGAAACATTGCTAAAGTCGACGTTGTCAGAGATCGTGAGACGCAGAGATCCAGGGGTTTCGGCTTTGTGACTTTTGAAAACCCAGAAGATGCCAAAGACGCAATGGCTGCAATGAATGGCAAGTCGGTCGATGGCAGGATGATTCGTGTGGATGAAGCTGGCAAGTCAGGAGGAAGATCTGACCGCGGGGGTGGCTTCAGGGGCGGTTCTGGTGGTTTCAGGGGCGGTTCTGGTGGCTTCaggggaggcagaggaagagGTGGTGGAGGTTATGGTGGGGGAGAAAGAAGCTATGGTGGGGATCGCAGCTATGGCGGGGATCGCAGCTATGGCGGGGACCGCAGCTATGGGGGTGGCGGGGACCGCAGCTATGGAGGTGgctacaggagtggtggtggaggaggatacTCCTCTGGGGGTGGCAGCGGAGGTTACAGAGAGGCCAGGAGTGGAGGAGAAGGTGGATATGGTGGCCGCTCCGGGGGATCCTACCGAGACAGCTATGACAGCTATGGTAAGTATAAAGATGTAGCCTAGTTGTTGCCATGATCTCACTGTTAGTACGAACTAGAAATGTTTAGGAGGAACTGGACATGATTGCATAGACTCCCAGAACGACCCCTGTAAGACTTTGTTGCTCAGAAGCCGAAAGCTTGTGCCCTCTTGGATTAGTATGTTAAAATACTCATGTCTGCTCAAAGAATCAAACATTTCTTTGAAACGATGGATATCCAGCCCTCTACCACCCTATCCAAAAGCAGAAAGACATTCCTAGATTTTTTCACTCAGTTTCTTTTGAAGAGGCATAGGTTCTTTCAATGCCCTTGTCCTGGTGCTTTCCTGTTGCAATGATAACTGTGGCACAAAATATAAATGGGCTCTAGTCTACTGTGAGAAATGTCAGAATGCTGCAGTGCCTTTACACTTGT

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481174 lncRNA downstream 33732 62052911 ~ 62054066 (-) True G424721
TU481172 lncRNA downstream 40507 62046836 ~ 62047291 (-) True G424719
TU481132 lncRNA downstream 49868 62033465 ~ 62037930 (-) True si:ch211-212d10.2
TU481117 lncRNA downstream 114557 61967747 ~ 61973241 (-) True G424666
TU481115 lncRNA downstream 143544 61938553 ~ 61944254 (-) True G424664
TU481188 lncRNA upstream 5880 62097904 ~ 62098122 (-) True G424735
TU481204 lncRNA upstream 125487 62217511 ~ 62231286 (-) True midn
TU481260 lncRNA upstream 160047 62252071 ~ 62252271 (-) True G424804
TU481262 lncRNA upstream 162378 62254402 ~ 62255328 (-) True G424806
TU481263 lncRNA upstream 163495 62255519 ~ 62255787 (-) True G424807
XR_002473566.2 mRNA downstream 4496 62076569 ~ 62083302 (-) False LOC110524260
XR_002473567.2 mRNA downstream 4496 62076569 ~ 62083302 (-) True LOC110524260
XM_021603746.2 mRNA downstream 4497 62076569 ~ 62083301 (-) False LOC110524260
XM_021603747.2 mRNA downstream 4497 62076569 ~ 62083301 (-) False LOC110524260
XM_021603741.2 mRNA downstream 49804 62034089 ~ 62037994 (-) False si:ch211-212d10.2
XM_021603748.2 mRNA upstream 125474 62217498 ~ 62249036 (-) False midn
XM_021603749.2 mRNA upstream 125474 62217498 ~ 62251746 (-) False midn
XR_002473568.2 mRNA upstream 185265 62277289 ~ 62281739 (-) False atp5f1d
XM_021603750.2 mRNA upstream 185266 62277290 ~ 62281739 (-) True atp5f1d
XM_021603756.2 mRNA upstream 236815 62328839 ~ 62441794 (-) True LOC110524266
TU481131 other downstream 86489 61998526 ~ 62001309 (-) True G424678
TU481096 other downstream 160376 61888198 ~ 61927422 (-) False G424649
TU481097 other downstream 174029 61888198 ~ 61913769 (-) True G424649
TU480929 other downstream 428213 61659033 ~ 61659585 (-) True G424502
TU480919 other downstream 436023 61649967 ~ 61651775 (-) True G424499
TU482117 other upstream 711914 62803938 ~ 62808122 (-) True LOC110524277
TU482168 other upstream 757980 62850004 ~ 62850247 (-) True G425612
TU482212 other upstream 802635 62894659 ~ 62900503 (-) True G425647
TU482441 other upstream 1167624 63259648 ~ 63260469 (-) True LOC110524282
TU482381 other upstream 1208900 63300924 ~ 63303394 (-) True G425810

Expression Profile