RNA id: XM_021603749.2


Basic Information

Item Value
RNA id XM_021603749.2
length 5323
RNA type mRNA
GC content 0.47
exon number 8
gene id midn
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62217498 ~ 62251746 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCCTAGACCTAGAGGGCTAGGACAAGAGGTGCCTCATCTTCCGAATTGTGCTTGTAGTACAAAAGACACCGATGTGCAAACATCACACGGGAATTTTAAGACACTCAAGTGCTAAGCAAGAGGAATAGGCTACAGAGTGGTCCTTACTACAGTGAAGACTCACAGATTTGTCTGAGAACTTACTGTCACAGTGGATGCTAACTGGACATACCTGTGTTTCTCAGTTTGGGAAGATTTACATGCCAAATCTGGGGAAACGTGTTTGAAAAACAAAAGCGTTAAAGTTCTCGCCACAACAATTGCTATCGAATGGACCAACATCCTAGCGCCCGGAGCTGCACCAGCCGCGGGGCTCCGTCTTGCGAGGCCGTCCCGAGTGAACCCTCCATGAATTTGTACATCCATTCCACAACCGGCACACGCTTCGAGCTCTCTCTTCCCCTGGAGGAGACTGTGGAAGGACTGAAGAGAAAGCTTTCTCAGAGACTCAAAGTACCAAAAGAAAGACTCGCCCTTCTACATAAAGAAACGCGTTTGAGTTCAGGAAAACTCCAGGACCTAGGGATCTCTGATGGGAGCAAGTTAACCCTTGTACCTACAGTTGAAGCAGGCTTAATGTCTCAAGCATCAAGACCAGAACAGTCAGTGATGCAAGCTTTGGAGAGTTTAACAGAAACTCAGGTCAGTGACTTCCTGTCTGGCCGCTCTCCTCTGACCCTGGCGCTGCGAGTGGGTGATCACATGATGTTCGTTCAGCTGCAGTTGGCAGCCCAGCAGTCTGGAGGGCAGCAGTTACAGCACAGGCATCTCATTGCCCGTGGGGGCGCAGAGGGCACCATGGGACAGTCCACAGGAGCATCTGGAGGGTCCACCAGCGGGCATCACCCCCGCGTCCCCACCccgcaccaccaccaccctcaccCGCATCCACATCCCCACCCCCAATCCCACTCCCATCCTCACCCCCACCTGTCCCGGCCCCATCCAGTGCCACCGCCCTCCACCAGCTCAGCAGCCTTCCCCCCTGCCCCCTCACACCAGCCCTCTCCTCCCatgtacccctcctcctcttccctctcttcaaGTCACTGCAACACCCCTCCTGCTCCTCGTCCCTCCCAGCTGCCCGGCAGTATGTTTAGTCGCTCCCACCAGCCCTTCCCAGGCCGACCCAGCCCCACCCCTGGCTCCGTCCCCCAAAGCACCCCCACTGCAGTCCCCTGCCCTGAGgcGAACTGCAGTGCTAAGAGCCCCAGTAACGGCACCAGCGCTTCAGCacgctcctcctcctcttcctcccgcaAACCAGGTGCCATTATCGAAAGCTTCGTCAACCACGCTCCTGGGGTCTTCTCAGGGACTTTTTCAGGCACTTTGCATCCTAACTGTCAGGATGGCACCGGGCGGCCCAGGCGAGACATCGGCACCATCCTGCAGATCCTCAACGACCTCCTGAGTGCCACGCGCCACTACCAGGGCGTGCCCCCCTCCCTCACCCAGCTCCGCTACCAGACGCAGTGTGGCTCGCCCTCGCCTGCCTCCCCATCGCCTtcaccccctccctcacccccagCCACCACCCCTGGCATTGCCGGCATCTCTGCCAAAGCTACCTCGGTGCCTGCCAGCAGCCCCATCTCACCCCCTCTCCACCCGCTGGTGCAGTGTCAGAGCCAGATCCGCATGTGCAAGCCCCCTGgtgacCGTGTGCGTCAGACAGAGAACCGTGCGACACGCTGCAAGGTGGAGCGTCTACAGCTCCTGATGCAGCAGAAGCGCCTGCGCCGGAAGGCGAGGCGGGACTCCAGAGCGCCCTACCACTGGCTGCCCAACCGCAAGGCGGGAcgcagcaacagcaacagcagcacaTCCAGCGAGGGATCCATGGACCTCGACTTCGATGACTCGGTGTGGAAGCCCGACGTCAAGGCCGACATGAAGACTGAGTTCGTCATGGCGTAATGACAAAGACgaggatgctgattggctggatAATGAAGAGGCAGCAGAGGACTCGGGTTAAGGAAGTTGGGAATGGTTTCAGAGGTATGGAAAACAAGCTGGAGCCGAGTGTGGAGCatgaaaaacagagagagggaagaaacctAGTCATCCTCTTCTCTCGCTGGGACAACGAACTGTCACACCAAAAGGCTCCCTGTTGTCTTTCATCTTATCATGTCCTCAACAGCCTCCTACCATTAGAAAtagacaacaaaaacaacaaaagattTTTGACGTTTGGACTGGGAACGGATATGTATGGACTTACAAGACTACGTTATGCATACGGACTGCAAAAATATGTACTTCCTATGAGGAACAACTAAAACTGAACTGAGCATAGCAGACTTGGATGGGGGTGGTGGTGTTTTGGtctttttttctgtttttctgttttaGTTTTACAAGGAGAACTCTGGAGAGAGATTCACACTGGACTTCTGAGCAGGATTGTCGGTGGCTGGGGCCGTGGTGTAACTACACAcaggacaaacagacagacagacaacccctGGCCCCAGAGCCATCCCTGGACTACTCTAATGGGCATTCCAGGTCTCCACTTCACCGACCAGAGTCGACTTTTTACCTATTGGGTTATCTTTTTATTTCCATTTTGAAAcgtaatattattttattttttctaaaCAAATATGTAGCATTGTTCAAAAAGCATTCAGGTTTTCATAAACAATTTTAAAAGTAGTCGTTGATTTGCACATTTTTCATGATTTTGGAACAGCAGGTCAGAGTGTGCAGGAAGTGGGATATGAGGAGCAATGACTCATTGGAAATGTGGTTTTGACTAAAGTTTTGACTATTACATAAACAGCAACCTCAGTAACATACAGTAGGGTATTAATAGGAATGAATtaatgaataaaataaataaatattaatgGAGTGCTTCAGAAGATTTTAAAATCATGATTAAAAAATGTATATGGAAAcaaatctatttttatttcactttttatCTGCTGTTTTCAAAAAACAGTAGCCAAGTATGGCTTGGGTCAAGCCATTCATTAAATTGATAGCTAACAAACATATTTATTCAATCATTCATCAGCTCATTCACTCATTAGGGTCATATAGCCACAAACAAATAATGGATAAAAATCCCATTGAACCCAACTACAAGCCTATTTCAAATATAGGTGGGGATCTCACATTTGTATGATACTTAGCAGGGGTTTATAAGCGTGTGCgtatgggtgtttgtgtgtgacagtGAAGATGGCTGATTCACCCCTCTCGTCACTCAAACAATGGAGGTTCAGTACAGAGAATACTCTCCGTTTCTCGCCATTCAGACGCTCTAGATATCTTTCCCATGTATTCCTTTTTGAACCAACATCCCACTTTAACCAAGGCGTCTGTTAGAAAATGTTGATTATGTCAAGCTACTTTCTAGTAATGGAAAAGAGAGGTGGAAGAAAGCTAAGAAATCCCAAGCAGGGAACCTGTCTCCAGTTTCATCAACCAGTGCCTCCACCAATGGATTCCCTCACATATCAGATTAGGCCATTTACAGACTTACTAAGAGATTTGCTGCTACATGGGACTTTGATAGACGGGGGAAAAGTGACTTTTCTTTGCATGCAAAAAGTGTGAATTATCCTGACTTTTGTATTGTtggaagaaaaaatatatacatgaaACTGGTGCTTTGGAGAATTTGTGGACAAATAATGCTTAGCCGCTTTTGTTGGTTAGGTTATTGTTTCCATAGAACAGCAACACTGTCCTGCTCCAAGTATTCTCAAAGCAAACCAACGCAGATGAAGTAAGAATGGACTCATATCTTGCTCACTCTGAACTGAACATTCCCTGGACAGTGATGATCATGAGCAAAGAGCAATTGACTTTCCTCCCTAAACGCTGGTTCAACCAACATCGTTCTCCTCAACATGGAGACAAGGACCCAGGCAGCAACCAGCCCTTAGTCCTCTCAGCCTAACTCAATAACATAGTGTTCAACAAGGTGCATGTTTGGGACTAATTAACAGGGGAAACCATTGGACCAGAGTACGCATCGTCACAGAACCCACACTTCTATGTAAAACACAATGTCTGACCCTACCCTACCGTGATTGCACTCACAGAGTTTTCAGTGGGAGATTACCTGTTTGGTAAACCTTGTCTTTTTGTCAGTGGCCTTACCTTTCACTAAACGAGACACGAGGGGACTGGTGGGGACGTGTGTTTGTTTCTTTACCTGTGTTTTGTGAAGACGCCATTGTCACTGAGGATTCGGGCATCTCTTGTTTGTGCTTTTAGCAGGTGGAGTCTCTATTATGTCAAGGCTTCTGTGCCTTAAAACGTTGCCCTTGCAGTGTGGGTCAGATATAAGATGAACAAATTATTTCCATTGATGAATTCATGAATTAATATAAAAGGCTGTAACCACATGGGAGCTGTAGTTTTTAGGGGTAAGCACGTTGAGTGAATTAATATCGATGTGTTTGTAATCTGTGTTTGTTCCTCAATCGGTCTTCCCATTTTCTCTCCATTGTGTTGCTATGTTTGTCTGTCTTCTTTGTCTGAACACCCCGCTCTGTCCTGCCCACCAACATTGACAAAACAAAGTACCTGAGGTGGAAGATTTGACTGCAGTGTGCTACTATGGCAACAAAGTGCCCTGACTCTGACTGGACAGGTGTCTTCTGAGGACGTGAGACCACATGACATGCACTTCCTGTCTCCTTGGACAAGACATTTCAAAGGacaattcacccccccccccccccccccccccccccctaaattgAATTAGATTTTTGATATATGTATGAACTATACTCTGTGTGTGCCTCACTTATgtgtgaaaaaaaacaaaaaaaaacataaaatgaTGACATGGGATGAGATGATTGGAcaaaagagggggtggggagggcaTTTACAAAACAGTTTGTAGGTGGAGTTCTGATCACATCATTTAAGTTGCCTGTTCTTTCTTGTAGCCAACCATTGAAAAATAATAACAGGAGTCAAGAATACCATTTACAATGTTCTAGCTATAGACCGGTGTAGCACATGTGTGACTGTATTAATTTATGAAACCAAAATGGTAACTGTGAATTCTGTATTTCTTTGtgcatttttttaagtgggagaaggTGGTTGGGACGTAGAAACGACTAATGCCTATGTCCTATTTTGTTTTTGGTGAAATATAACGGAAATCATGTTTCCCCTAAAAAACTAAAAAATGTctacatatatttttttcttaagcAATACATTTCAGTGTGACTTGTGATAGAACATTTTTCTTTTTTAggtaataaataaaaaacaaaacgAGTACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481188 lncRNA downstream 119376 62097904 ~ 62098122 (-) True G424735
TU481174 lncRNA downstream 163432 62052911 ~ 62054066 (-) True G424721
TU481172 lncRNA downstream 170207 62046836 ~ 62047291 (-) True G424719
TU481132 lncRNA downstream 179568 62033465 ~ 62037930 (-) True si:ch211-212d10.2
TU481117 lncRNA downstream 244257 61967747 ~ 61973241 (-) True G424666
TU481260 lncRNA upstream 325 62252071 ~ 62252271 (-) True G424804
TU481262 lncRNA upstream 2656 62254402 ~ 62255328 (-) True G424806
TU481263 lncRNA upstream 3773 62255519 ~ 62255787 (-) True G424807
TU481264 lncRNA upstream 6910 62258656 ~ 62258906 (-) True G424808
TU481265 lncRNA upstream 9237 62260983 ~ 62261300 (-) True G424809
XR_002473564.2 mRNA downstream 125474 62084453 ~ 62092024 (-) False cirbpb
XR_002473568.2 mRNA upstream 25543 62277289 ~ 62281739 (-) False atp5f1d
XM_021603750.2 mRNA upstream 25544 62277290 ~ 62281739 (-) True atp5f1d
XM_021603756.2 mRNA upstream 77093 62328839 ~ 62441794 (-) True LOC110524266
XM_036978023.1 mRNA upstream 334492 62586238 ~ 62680214 (-) False LOC110524270
XR_005051828.1 mRNA upstream 334492 62586238 ~ 62680215 (-) False LOC110524270
TU481131 other downstream 216189 61998526 ~ 62001309 (-) True G424678
TU481096 other downstream 290076 61888198 ~ 61927422 (-) False G424649
TU481097 other downstream 303729 61888198 ~ 61913769 (-) True G424649
TU480929 other downstream 557913 61659033 ~ 61659585 (-) True G424502
TU480919 other downstream 565723 61649967 ~ 61651775 (-) True G424499
TU482117 other upstream 552192 62803938 ~ 62808122 (-) True LOC110524277
TU482168 other upstream 598258 62850004 ~ 62850247 (-) True G425612
TU482212 other upstream 642913 62894659 ~ 62900503 (-) True G425647
TU482441 other upstream 1007902 63259648 ~ 63260469 (-) True LOC110524282
TU482381 other upstream 1049178 63300924 ~ 63303394 (-) True G425810

Expression Profile