RNA id: XM_021603756.2


Basic Information

Item Value
RNA id XM_021603756.2
length 3067
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110524266
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62328839 ~ 62441794 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttgcgaaacagaccaaacagaccagaccggggtttggggctTGATAAGTTAATGAGAGAAAATAAAAAGTATTCCTTAGTTGTTCATTTTCTCGAAATCTGAATGCACAACCTAGATTCAAGACAAGTACTTAAGTagctgaacatgttattactccaacctcgagAAAGTGATAAactgaaacatttttatttagtatacaacaactttatatcgaaggagtgcctttgatttgtTTGAGTTTAGCGCGAGACGACCATCAGACACGATTACGTTTTTATACGCATGCGCTTTGCTAGTcaacgtcgccatgacatcgcctacaactgtgatcggggatttctattggagaagcagttttacCCTATCTTCATATTGTACTGTCTTTGGTTTGGAGCATGGAGTGTGTAAACAAGATGGAGGCGTTTCTGACATCCAGCACTTCTACATGGGCAATCGATGATATCGGTCAAGTAGCATACAAGATCTGAGGATCCCTGCATCGATTCATTGACGCTGGCAGACCAGTTTTGCAGTCTTGGCAAGTACCCCGGatttattcggtacatgggatGGAGGTAGAAAATTAGATCAGCTAAACATTGTAGAAGAACTCAATGAAAATCATATACCTGATTCACAATTAAGTTGCCCACAACATGACATTCACCAATAACCAAAGAAAGCTGCACACATCACAACACTGCAGGTCCCAGGTGTCACAAGGACATGGCTAAGGAGGGAATAGGCCTATATCATCAGAGAACAAAGAACTAAACCATTCCCTCATACCATAGCCAGACATTGTAATATTGGACAGTACCCAAACTCAGTCCACTCACTTCTCTGCTCAAGCAGTGCTGCATGGTCAGCAGGTTAAGGTGAACATTCTGTAGCCTTTCTGCAGTTGCAGCATCCTGCATTTCAATATTCAGTATTGGAATATTTTTCTTGCAATTTCGTACAGTCCGACCCAGGGCATCCAGAAacaaacagtacagtagtattaaAGAACAGTCAAGTTGCTGAAGGGGCAACCATGAATGACGAGGACATCCATGAACACATGGACTATTTGGAGAATGACTTGACCATGTGCATGGAAACCTTCATCCACCGCATCGACTCCACTGAAGTCATCTACGAGCCGCGGAGGAAGAAGGCCAAGCTGATTGGGAAGTACCTGATGGGAGACCTGCTGGGGGAGGGCTCCTACGGGAAGGTGAAGGAGATGCTGGACTCTGAGACCCTCTGCAGGAGGGCAGTCAAGATCCTCAAGAAGAAGAAGCTGAGACGCATCCCCAATGGGGAGCAAAATGTAAAAAAAGAGATTCAGCTGCTACGAAGATTAAGGCACAAGAATATTATCCAGTTGGTTGAAGTTTTGTATAATGAGGAGAAGCAAAAGATGTATATGGTGATGGAATATTGTGTATGTGGAATGCAGGAGATGTTGGACAGTGTTGATGAGAAAAGGTTTCCAGTCTTTCAAGCTCATGGGTACTTTTGCCAGCTGCTAGATGGCTTGGAATATTTGCACAGCCAAGGAATAGTTCACAAAGATATTAAACCAGGGAATCTACTGCTGACGACGGATGGCGCACTAAGAATCTCCGACCTGGGTGTAGCAGAGGCGCTGCACCCATTTGCAGAGGACGACACATGTTGTACGAGCCAGGGCTCTCCGGCCTTCCAGCCCCCAGAGATTGCCAACGGCCTGGACACCTTCTCAGGGTTCAAAGTGGACATCTGGTCTGCTGGTGTCACACTttATAACATAACAACCAGCCTGTACCCTTTCGAAGGTGACAACATCTATAAGCTGTTTGAGAACATTGGGAAGGGAGACTACAGTGTTCCAGAGGAGTGTGGCCCTCTGCTCTCTGGCCTGTTAAGAGGAATGCTTGAGTATGACCCTGAGAAGAGGTTCTCAATACAAAACATTAGACAACACAACTGGGTAAGGAAGAAACACCCTGCAACGGAGCCTCTGGTGCCCATGCCCCCTAGTGCTGATCGGAGGGACGCGTGGCGTAGCATGACCGTACTGCCCTACCTGGAGCACCTGCACGGCTACGCCGACCAGGACGACGAGGATGACGACGAACTCTTCTACGGAGACGGAGAGATCATCTACTCTCAGGGTTTCACTATGACAGGTCGGGTGCATGAGGATGGGCTGGAGCAGAACGGGCACCAGGGGGGTTGTGTGGGGccggggctggggctggggctcaGGACCCTATGTGTGAACGGCACGGAGACAGACCAGGACCACTACCCAACCACCAGCAGGACCAGGTCCCGATCAgaacgcctctcctcctcctcctcctccaacccctcACGCAAAGGAGTGTCCACCTACAGCCGCATCCGCAAGCTGTCCAACTGCAAGCAGCAATGAGGGCAGCCCCTGGACCCCCAGCCCTGAACACATATACTGGACAGGTTTGTGTTCTCTATTTTCCGGCTCCCTGACGTTTGGGTGATGAATGTTTTGACAGCCTGGTCTGCAGCATGCAATAACAGGACATGATGCACTACAGTGGTTTATTTCACTAGTTATTTTCTGTCTGACAACGTAAGTGAAGCTCcagagagaaatggagaagaGGCTAGGACTTACCCCCTTCTGCAGATCATACTGGGAATCCCACCCCTCACTGTATGAATGTAGCTCGTTTTAGACTACTACACTGTTTCTCCTACAGTTACTCTGTATTAAAGCGCACATTGTGATGTGTATTGAATGACATGGGTCATTTCAATAAACTACAATATTTGTAACGGTAATAAGTATGATCATTTAATAAGAAATGCATTAACGGCATATGCAGGCTAAAGAAAAGGGAACTATAGACAAGCCAAGGATGCATAACTATTCGAGAATGTCTTtgctttagatttttttttgcatcTTTAGTTTTGGTGTTTTAGTCCCCAAAATgggttttaattattatttatatAAAATGCACCCCAACCTCACCAGCTGTTTGTTCTGTGATTTTTCTCTTTATTTGTGGCTGTATTATAAATAAATGTATCTTGTCAATCAAACAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K07298 STK11, LKB1; serine/threonine-protein kinase 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481280 lncRNA downstream 46463 62282172 ~ 62282376 (-) True G424823
TU481265 lncRNA downstream 67539 62260983 ~ 62261300 (-) True G424809
TU481264 lncRNA downstream 69933 62258656 ~ 62258906 (-) True G424808
TU481263 lncRNA downstream 73052 62255519 ~ 62255787 (-) True G424807
TU481262 lncRNA downstream 73511 62254402 ~ 62255328 (-) True G424806
TU481350 lncRNA upstream 35138 62476932 ~ 62485576 (-) True G424878
TU481376 lncRNA upstream 52695 62494489 ~ 62494789 (-) True G424903
TU481403 lncRNA upstream 87522 62529316 ~ 62606813 (-) True G424927
TU482119 lncRNA upstream 353942 62795736 ~ 62796548 (-) True G425568
TU482140 lncRNA upstream 366765 62808559 ~ 62809332 (-) True G425587
XR_002473568.2 mRNA downstream 47100 62277289 ~ 62281739 (-) False atp5f1d
XM_021603750.2 mRNA downstream 47100 62277290 ~ 62281739 (-) True atp5f1d
XM_021603749.2 mRNA downstream 77093 62217498 ~ 62251746 (-) False midn
XM_021603748.2 mRNA downstream 79803 62217498 ~ 62249036 (-) False midn
XM_021603743.2 mRNA downstream 236815 62087798 ~ 62092024 (-) True cirbpb
XM_036978023.1 mRNA upstream 144444 62586238 ~ 62680214 (-) False LOC110524270
XR_005051828.1 mRNA upstream 144444 62586238 ~ 62680215 (-) False LOC110524270
XM_036978024.1 mRNA upstream 148781 62590575 ~ 62680215 (-) True LOC110524270
XR_005051829.1 mRNA upstream 354823 62796617 ~ 62797240 (-) True LOC118964634
XM_036978027.1 mRNA upstream 362038 62803832 ~ 62805303 (-) False LOC110524277
TU481131 other downstream 327530 61998526 ~ 62001309 (-) True G424678
TU481096 other downstream 401417 61888198 ~ 61927422 (-) False G424649
TU481097 other downstream 415070 61888198 ~ 61913769 (-) True G424649
TU480929 other downstream 669254 61659033 ~ 61659585 (-) True G424502
TU480919 other downstream 677064 61649967 ~ 61651775 (-) True G424499
TU482117 other upstream 362144 62803938 ~ 62808122 (-) True LOC110524277
TU482168 other upstream 408210 62850004 ~ 62850247 (-) True G425612
TU482212 other upstream 452865 62894659 ~ 62900503 (-) True G425647
TU482441 other upstream 817854 63259648 ~ 63260469 (-) True LOC110524282
TU482381 other upstream 859130 63300924 ~ 63303394 (-) True G425810

Expression Profile