RNA id: XM_021603758.2


Basic Information

Item Value
RNA id XM_021603758.2
length 2293
RNA type mRNA
GC content 0.43
exon number 8
gene id bsg
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62476874 ~ 62490792 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAGTGATGctgcgcctctgggtttagaaactctgtggttTGGTAATCAAATCTATTTTGGTCACGCCCGAGCGTCATGTCATGTGTACGTGCTAGTTCACGACGTGACTGATTGAATTGAGGAACAAGTAGAGGACGACCAACTCGGTCGATGGTGGAGCAGAGCTAAcgtattaaaaaaaaattgtgaaaGTATATATCTGTGGTAGAAAAGGACATCGTCGAAATGAAATATCTGTGGGGTTTAAGTGCCCTCCTCTTGTGCTTGTACCGAGCCGATGCCCTGACAGATCCCTTAATTGTGTCTTCACCTATGGAGGTGAACAACCAGACCTCTGCCATTCTCTCGTGCAACCTGACCAACCCCCCGTCCACAGTCAAAGGTCATTACTGGATGAGGAATGGCAATGTGATCGAGTCATCCAAGCAGGACTCTGCTGCTCTCTACACCGAGTACATCTTGGCTAAAATTGATTTCCATTCTGGTGGAGTATATGACTGCGTCTTCCTGTCTGATCCTGTGGTGAAGAAATCCATTGCAGTCAAAACTGCTATCCATGTCTCGGCCTACAAACGCTCTGAGCATGGAAACGAGCAGGACAAGGGTGTGCTGGTGTGTGTCAGTCATGGATATCCACTGCCTACTGACTGGAAGTGGTACAAACTGGAAGGAGAAGAAATGCTGAAGAAGGCCATCACCAACGGTACTGACAGGTATGAGATCAAGAGCACCCCCAACAGGACCACCCTGACCATCAATGACCTGGACATCGCCATGGACATGGGCGACTACATGTGCTACGGTGCCAGAGAAGTGGACTCGGCCTTCGACAAGATCCACCTGCGTGTCCGCAGCCGCCTGGCCGCCCTCTGGCCCTTCCTGGGCATCGTGGCAGAGGTCATCATCTTGGTCAGCATCATCTTCATCTACGAGAAGAGGAGAAAGCCTGATGAGATCAACGACGATGAGGACTCAGGTTCTGCTCCCCTGAAAAGCAATGCTGCCACAAACCACAAGGATGTCAGGCAAAGGAACTCCAActgagagaagatgagagATATCCTGATGACTATCTTCCAGGATGAAGAGCATTTGCTGAGCGTCACATAATCTAGTGCACCCTGCAAATTTTAAACAACTTTAAATTTAAATTCTTGAACGTTAATGTCTTGAGAAATGGACTGAATTGTACTTCTATATTTCTCTCCATATTGTGCTTTCGGCTTAAGGCcattggcaaaaaaaaaacatgtttttgcatgAGTTTTATTGCCGTTCTAGAAGTGTTTGTTCGTAGTGAAGTCCATTGTAAAGGTTTACGTGGGAATGATCTATTGGTGGTTTTTCTATTTGTGCTTAtagcttcctccactgtcctTCACGTCTAAATATCTGCTCTTATATTTGCAAGCATGAACAGCCTGTTAAGCAACATGGATCTTACTACGATTGTGAAACGTTTGGACACTGACATGCTTTTTCCCCAGGCCCTATTaccacacctgactccaataatcaactaatcattgtctttagaatgcaattagtttaatcaggtgtgtttAGATATAGGGCTGGGGACAAATGACATGAATCAGGCCCCTGAACTGGAGAGGCCCATCCATGCATCCCTCACATAGTTGGCTGAGTTATAGGATACACCTTAACACAGTCCATTTGACTTCCTCCACTGTATTTGATTTTCTGCAGAGGAAGTTATAATACTGTAGGTAGTTCCTAAATTAAACGCAGCAGGTAGGATTATAATGCAATTTCGTCTGAGTTCCTGCTGTATTTAATACATGCGCTGTTgagattttaaaaggctaatcaTTGCAAAATAAAACCCAAGCTTTTTGGAGTTTTACTACTATGTTAAGTTGTAGTTTTGAATTTTCTATGCTTTTGTTGCCATAGTCACATCCATAGTAATACTTCCTGAAAATGGACCAAGTGTAAGAGATTGGTTTTCTGCTTCTGAACAACGACTAATACTAATGTATTAATCAGAATGGAAGGTGATTTTTAAATGGCTTGTTTTCTTGAAGGGTACATGGAACCTAAACAGGATTGACACTATTGAAGCATTGTCCTTTTTCTAACCTCCATTTTGTAGACAACTCAGATGCCACATGTTGCACTAACTTGATTTAGTATTGTGACTGGATGTGCACCGGTAGTTTAAGACGTACACGTGAAAATGACTGTCATTTATTTTGCTTAAAAGTAACTAATTAGATTCAACACAACTGTACCAATTTGCACAATCTCAATAAAGTGATCTGATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480581 lncRNA upstream 43850 62416223 ~ 62433024 (+) False G424193
TU480582 lncRNA upstream 43850 62426403 ~ 62433024 (+) True G424193
TU480584 lncRNA upstream 107620 62322402 ~ 62369254 (+) True G424195
TU480574 lncRNA upstream 149107 62324732 ~ 62327767 (+) True LOC110524265
TU480536 lncRNA upstream 198707 62277291 ~ 62278167 (+) True G424154
TU480678 lncRNA downstream 38535 62529327 ~ 62606637 (+) True G424285
TU480683 lncRNA downstream 42721 62533513 ~ 62604086 (+) True G424288
TU481537 lncRNA downstream 234338 62725130 ~ 62785594 (+) True LOC110524272
TU481541 lncRNA downstream 242685 62733477 ~ 62772269 (+) True G425058
TU481568 lncRNA downstream 296167 62786959 ~ 62788098 (+) True G425085
XM_021603757.2 mRNA upstream 2729 62468263 ~ 62474145 (+) True LOC110524267
NM_001160487.1 mRNA upstream 27114 62444675 ~ 62449760 (+) True LOC100301654
XM_021603753.2 mRNA upstream 149102 62283054 ~ 62327772 (+) False LOC110524265
XM_021603754.2 mRNA upstream 149102 62283056 ~ 62327772 (+) False LOC110524265
XM_036978020.1 mRNA upstream 149102 62283056 ~ 62327772 (+) False LOC110524265
XM_021601253.2 mRNA downstream 2364 62493156 ~ 62560551 (+) False hcn2
NM_001124448.1 mRNA downstream 2709 62493501 ~ 62548171 (+) True hcn2
XM_021603761.2 mRNA downstream 199095 62689887 ~ 62746926 (+) False LOC110524271
XM_036978025.1 mRNA downstream 248962 62739754 ~ 62746926 (+) True LOC110524271
XM_021603762.2 mRNA downstream 282308 62773100 ~ 62785577 (+) False LOC110524272
TU480579 other upstream 169937 62283152 ~ 62306937 (+) False LOC110524265
TU480458 other upstream 371002 62105523 ~ 62105872 (+) True G424079
TU480287 other upstream 754850 61721537 ~ 61722024 (+) True G423922
TU478964 other upstream 1780969 60694257 ~ 60695905 (+) True LOC110524226
TU476694 other upstream 3532657 58942728 ~ 58944217 (+) True G420634
TU481721 other downstream 554298 63045090 ~ 63051530 (+) True G425224
TU482675 other downstream 1185622 63676414 ~ 63684239 (+) True nfil3-4
TU483050 other downstream 1686236 64177028 ~ 64179386 (+) False sac3d1
TU483051 other downstream 1686236 64177028 ~ 64179386 (+) False sac3d1
TU483052 other downstream 1686236 64177028 ~ 64179386 (+) True sac3d1

Expression Profile