RNA id: NM_001124448.1


Basic Information

Item Value
RNA id NM_001124448.1
length 2982
RNA type mRNA
GC content 0.50
exon number 7
gene id hcn2
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62493156 ~ 62560551 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGAGGGGGAGCATCATCAACAGCGCGCAAGAACTCCAACAATGAGCTGTGGTTCATGCAAGGCGAAGAGTCCGCACCTTGTGCTCCTACAGGCGCCACAAGCTGTGCTCTGTTATGCCAGGGAGATGCTACTGCCCGTGGCGGCTCATACTATAGGGCTGGAGGGGACTTAGCCCCAGGGTCAGCGGTAACCGGGTTGGCTACTTGTTGGACAGGTGAAGGCACTACCGGTGTGATATGCAACAACAACGGAGATTGCAGAAGGGACCCCAACATTTCAGGGAGCCTGTCCTCCATCGTCTCTAGGCAGGAGAAACAGACCGGTGGAATAGTTGCAGCGGACAACGGGAAAAGGCCAACTAGATGTAATTCCAGAGTCGCCAGCATGGACGGTTCGATCACCTCAGTACAGGGGCAAGGGCCCGAGGTGGCCGGGGCCACAACTACTGGCAATGAGAAAAAGGACTCCAGAGTTTCCTTCTCAAGTGCCCCTAATAGAAAAGCATCGTCCTCTGTGCAGAACCAACAGAACAGGAATTCTCtcgcattttttaaatctgaggaTGGACCCCAGATTGTGCCAGATGATGGGGAACCGCAGGACAATCGGACTTATATGCAGCGCCAATTTAGTTCCATGCTTCAGCCTGGAGTTAATAAATTTTCCCTGCGTATGTTTGGGAGCCAAAAAGCGGTGGAAAAGGAACAAGAGCGCGTCCAATCGGCCGGTAATTGGATTATTCATCCATACAGCGATTTCAGGTTCTACTGGGATTTCACCATGCTGATGTTCATGGTGGGCAACCTCATCATCATCCCCGTTGGGATCACCTTCTTCAAGGACGAGACCACCGCGCCCTGGATCATCTTCAACGTGGTCTCTGACACCTTCTTCCTCATGGACCTGGTCCTCAACTTCCGCACAGGCATTGTATTTGAGGACAACACCGAGATTatcctggaccccaggaagatcaAGAGGACGTACCTGAAGACCTGGTTCTTGGTGGACTTTGTCTCCTCCATCCCTGTGGATTATATCTTCCTGATTGTTGAGAAGGGGATCGACTCTGAGTTGTATAAGACGGCCAGAGCCCTGAGGATCCTACGCTTTACCAAGATCCTCAGTCTGCTGAGGCTGCTCAGGCTGTCCAGGCTAATCCGCTACATCCACCAATGGGAAGAGATCTTCCATATGACCTATGACCTGGCCAGTGCAGTGATGCGTATCTTCAACCTGATTGGTATGATGCTGCTGCTGTGTCACTGGGATGGCTGTTTGCAGTTCCTGGTTCCCATGCTGCAGGACTTCCCCCAGGACTGTTGGGTCTCTCTCAACAAGATGGTGAACGACTCGTGGAGCGAGCTGTACTCCTTTGCCCTGTTCAAGGCCATGAGTCACATGCTGTGTATCGGTTACGGGCGCCAAGCCCCAGAGAGCATGTCTGATATCTGGCTGACCATGCTCAGTATGATCGTGGGCGCCACCTGCTATGCCATGTTCATTGGCCATGCCACTGCCCTCATCCAGTCCCTGGACTCATCCCGGCGCCAGTACCAGGAGAAGTACAAACAAGTGGAGCAGTACATGTCTTTCCACAAACTGCCGGCTGACTTCCGACAGAAAATCCATGACTACTATGAACACAGATACCAGGGCAAGATGTTTGATGAGGAGAGCATCCTGGAGGAGCTTAATGAACCACTGCGGGAGGAAATTGTCAACTTCAACTGCCGTAAGCTGGTGGCATCCATGCCCCTGTTTGCCAATGCCGACCCCAACTTTGTGACAGCCATGTTGACCAAGCTCCGCTTCGAGGTCTTCCAGCCCGGAGATTACATCATCAGGGAGGGCACCATCGGCAAGAAGATGTACTTCATCCAACATGGTGTGACCAGCGTGCTGACCAAAGGAACTATGGGCATGAAGCTTTCTGATGGATCCTACTTTGGAGagatCTGTCTGTTGACCCGAGGCAGACGGACGGCCAGTGTGCGGGCGGACACGTACTGCCGTCTCTACTCCCTGTCTGTGGATAACTTCAATGAGGTGCTGGAGGAGTACCCCATGATGAGACGAGCCTTCGAGACTGTGGCCATCGACCGACTGGACCGGATAGGTGAGACCAGCCCACCCACTGACCAGTAAATAAGCCACTGACCCATACAGGATTAGCTATGCGCGTAGTTGAGGCATTTTGTCATTCACAGAATCAGCAGAACAAAAacagacatactgtattctatcaaTGGAACCTACTGTAACTATGCCACTAATCATTTCTCTTTGACTTCCCTGGTTCCTTTGATTTAGATGCAGCTGGTGTATCTTCAGCATATGATTTTCACAAGATATGATTATTATCTCAAAATGACTGTGTGTGCCGTCCTCCCCTGGGTTTACTGTAAATGTGCTCTCAAGAGGAGTGATGCTCATTTGTGAAAGGGACTGCTCAGCACACTGTCTAAACAGCTTCCTTATGCTCTCCTCTTCTGTGTGGAAGGGAGGAAGTTACCGTATTCTCTCTTGGTTGCTGCGTTACCTCCAGTGTTGCTACACTGTCAGTCACTCAGCTATCATCAGAAAGCACCTGGTTAGTGAATTCCGAGCTTTGAGTGTAAACATATAAATTATTAAACAGTGAAGGCAAGGTCAATGTGATGCTGATGTCACCGCTCAGTGACGTGCAGGGGCCCTGCATCCACCACCTGCCAGCGGTTGCCATAGCAGCCAGATTCCACATCAAGTACGAGACATTCGGTTTCACACATTCAGATGAGATTGAGTTGTCTTTGATCTTTGACAACAGATTAATACCTAACCTGAATAGAGCATAGGGGAGCAAGAAAGGTTTAATATTCTGTTTAACCCATTCATGTCTGTAACagaaatgtaaaatgtattttagtaCACTTGTTCTCTGAGCTTACTGATGGATGAATCTGAAGACATCTTTTAAATCAGCCAAAGCATTTGTCTAC

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04955 HCN2; hyperpolarization activated cyclic nucleotide-gated potassium channel 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480581 lncRNA upstream 60477 62416223 ~ 62433024 (+) False G424193
TU480582 lncRNA upstream 60477 62426403 ~ 62433024 (+) True G424193
TU480584 lncRNA upstream 124247 62322402 ~ 62369254 (+) True G424195
TU480574 lncRNA upstream 165734 62324732 ~ 62327767 (+) True LOC110524265
TU480536 lncRNA upstream 215334 62277291 ~ 62278167 (+) True G424154
TU481537 lncRNA downstream 176959 62725130 ~ 62785594 (+) True LOC110524272
TU481541 lncRNA downstream 185306 62733477 ~ 62772269 (+) True G425058
TU481568 lncRNA downstream 238788 62786959 ~ 62788098 (+) True G425085
TU481569 lncRNA downstream 240042 62788213 ~ 62788412 (+) True G425086
TU481574 lncRNA downstream 240857 62789028 ~ 62789271 (+) True G425090
XM_021603758.2 mRNA upstream 2709 62476874 ~ 62490792 (+) False bsg
XM_036978021.1 mRNA upstream 2709 62476874 ~ 62490792 (+) True bsg
XM_021603759.2 mRNA upstream 8154 62479785 ~ 62485347 (+) True LOC110524269
XM_021603757.2 mRNA upstream 19356 62468263 ~ 62474145 (+) True LOC110524267
NM_001160487.1 mRNA upstream 43741 62444675 ~ 62449760 (+) True LOC100301654
XM_021603761.2 mRNA downstream 141716 62689887 ~ 62746926 (+) False LOC110524271
XM_036978025.1 mRNA downstream 191583 62739754 ~ 62746926 (+) True LOC110524271
XM_021603762.2 mRNA downstream 224929 62773100 ~ 62785577 (+) False LOC110524272
XM_021603763.2 mRNA downstream 243808 62791979 ~ 62796480 (+) True LOC110524274
XM_021603764.2 mRNA downstream 249533 62797704 ~ 62802340 (+) False LOC110524275
TU480579 other upstream 186564 62283152 ~ 62306937 (+) False LOC110524265
TU480458 other upstream 387629 62105523 ~ 62105872 (+) True G424079
TU480287 other upstream 771477 61721537 ~ 61722024 (+) True G423922
TU478964 other upstream 1797596 60694257 ~ 60695905 (+) True LOC110524226
TU476694 other upstream 3549284 58942728 ~ 58944217 (+) True G420634
TU481721 other downstream 496919 63045090 ~ 63051530 (+) True G425224
TU482675 other downstream 1128243 63676414 ~ 63684239 (+) True nfil3-4
TU483050 other downstream 1628857 64177028 ~ 64179386 (+) False sac3d1
TU483051 other downstream 1628857 64177028 ~ 64179386 (+) False sac3d1
TU483052 other downstream 1628857 64177028 ~ 64179386 (+) True sac3d1

Expression Profile