RNA id: XM_021603761.2


Basic Information

Item Value
RNA id XM_021603761.2
length 4042
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110524271
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62689887 ~ 62746926 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacactaactctttctgtgactctctctccctatcacaccctcacacacacttacacatgcacacattcactctctctcctcattcaacTCATTCTCAGCCACGGGTCAGCAGCACAGACAAGCACCTTATTCCAGTccagctggagagaggagcatCGCAAGGTGCACACATCGCAAGACAGGACACTGACTGACTCTGCAGCCGTAAAAGAAGGACGCAAGCCAAGGAACAGAACAAGCTTTCGGAGAACAAGGAAACAACAAAAAAGAACAGATTGCTTTTGGCAATGGATTTACAAAGTGAATTGTTTTCCGgtgaataaaagctgaaatacaaAGAAGAGGAGATCCTCATCAGACACACAAATTAAGAAACAAACTCATCTGGGAATAAGGACTGGTTGGAAGTCCAGGTTCCTCTCTGCTCTGTTGTTTGGAAGCCCAGGCTCCTCTCTGCTCTGATCCTCAGTGACAGGGTCTGCTGCTCCCTCGATCATCACCCCTTCCCACCCTCAGAGAGCGACCACTCACCTGGACCACACAGCCCGGGTCTCCAGCCAGCCAGCATGCATACTGCCTGTGCAATGTGCACCTTGGGAGTCTGACTCACCATGTGCAGATGGATGCCACCCGTCGCTAGTCTCCGTCCTGACCTCGCTGCCATTGGCACTGCCCACGCTGGGCTTCCGCCCTTGCCCAGTGCTGCATCCCTTCGCTTGGCGTTCCTCACCCTGCTCCTGGTGGCTGGCACAGCTCTGGGGGGCTGCCCGCTCGGGGTAGGGCATGAACCCCTCCAAGTACTGGCGAGAGGCATCAACTGCTCATGGACACTGGAGCGGCACACACGCAGTTACAATCACCTAGAGGGCGACGTCCGACTACGGCGGCTCTACTCCGCCAACAAGTTCTTTCTCTGTATCGACAAAACAGGCAAGGTGGATGGCACCAGACGGAAAAACTACGCTGAAAGTCTAATGGAAATCCGATCTGTCAGTGTGGGAGTCGTGGCCATCAAATCTGTCAGCACCGGGCTGTACTTAGCAATGTCCAAAAAAGGCACACTCTTTGGATCGaTGAAGTACAACCCTAATTGTAAGTTCAAGGAGCGCATCGAGGAGAATGGCTACAACACGTACGCCTCCCTGCGCTGGAAACACGGCGGCAGGCAGATGTTTGTGTCTCTGAACGGTAGGGGGAAGCCCCGGCGAGGCCACAAAGCTCGGAGGAGACACCCCTCCACCCACTTCCTCCCCATGCTGCCCTCATAGCTGGACAACAGGGCTCTGCTCTGCTTTGCAACCAGCCCACCACAGTCCCAGTCCATCCAACTAGTGTTGTTGTTATCAAGATAACTATTGATGATGTTATTATTATTCTATACATCCCCTCTCCCATATATGTACATTTGTTGGGGTTTTATACACAATTTTGTTTGTCGAGATCGCAGTGGGGGCATAATACAGTACGTTTAAGTTATTCCTTTTTTAGTGTGAGGTCCAGAAGTAAAGCTGCTAATATTGTGTAAATACAGCATgtctattattattatgattggTTATCAAGCTGAGGGATGACATTGATGACGCTCTTCTGTGTTCAGGAGTAATTTTGACACCACCGTCTTCTGCAAAAGTGTGTAATTGAAACATGCCCCCCCTTTAAAGGGTACGAGAATTGTCTATATATtgcctccctcccatcccttcatTTGTGACTCTATAGGAGACAATGCTTTTCCTTGAGTGACCTTACAATATGCTATTAAAGCAAACAACTGGTGAAAGAAGCCTGACAAACAGTGAACAGATTTGAACATTGATTTAGGTTGTCAAATATGTTCATCTGAGCAAGTAACTAAAGCATTTGAGAGAGGACTCTCTTAAGATACTGAATGTCCTTTACAATAAAAGGACTCTTGCACTTGACTGGACTTCAGAGGGGACAGAATTCCTTGTTGACGAAAACATTTGGACTGAACGTTCAAACCCATGAATGTCTGCTATAAGAAAAAAACATAAACTGACGACATCTGGCTATCGGTTCTTTTGGGTTTCTGAAATGAGTGTGTGAGCTCTGCAGAagtcccactgggcaaaaactagTTAAAACAACAttaccacatcatttcaacaaaataattcaGTGTGATGACGTTGACTCAACgtgaaaactgattggatttgcaaaaagtcatcaacctaAGGGAATTTAGCCATTTTCCACCTACATGTTTACCTAAATTCAATGACATGGTGACTCAACCAAATATAAATCCAAACTAGATGCTGaaatgacatctgtgcccagtggggtgtGCTTCAGCCTCCTTCTCTCATTCAATAATCCTACACCACTAGCTCAGGGGTCAATCTTTGAAAGTGGGACTCATGACATTATCTCTGATATGTCAGTTCCAGAGTCCAGTAGTAAAATGCATACGGTACTCCGTTTGAAACACGTTGAGCATTTGAGGCTGTATGTACACTTCTTCACAGTGCTAAGACTACCCATTCATTTCTAACGTATGGTAACTGGTTATTGCATTATCTTGTCAGGTCTTGTTACCATTTTCAAAAACCTGTTGCAAATAGAACTTTTAATATATTTAAGCCTTTTTGTACCGTATAACATTTGAAGTTGATGTTATTGCCTCCATTTTGTGTCTAGTCTGAAAATCCTAACTGTATTCCATTCCATATTTTAGTCTATACTGTGTGTTACTGTAATATGGCACCTCCTAACATCACAATCATCATCTACTGAGCGGTCAGCAGTGACAGTGTCTACCAGAACACCCGTTTCAACTATCAGTCAGCTATTAAGCAGACAATATTGGTCTGTCAATTGAACACTGTCATCATAACAACATAAGCGAGTGCCTTGATTCATGTTCAGCCTGGTGAACTTCAATAAAATGCACCTAAGTTACACCATTTTCAAGGAGTCACTTATCTCCATCAGAGTTACATCATCTGCATTATCATCATAACAACATGAACATTCAATGCTGTAGTGGACCTCCCCTGACTTGTAAAATACTTGTGCCGATGAGCTCTTCAATGGGCTATCATGGGTCTTTAATCACAATGAAGGCCTGGTAGCATGGGAGGCCATTGAATCTTTTCACCCTGCAGATTGGAAAGATGGGGATGAATGGCCTCTATTGGGGGGGAGAAAGGCTAACCTTTCAGACTGTCAATGTGACATTTCTTTGAAGGGAAACATGTCTAGTCAAATAGCTTAATGTCGCTCTGCTGTTCGATCTAAAGGCCTGCCAAACAATTGGATGTTGGTGTGAGGGTCTAAGGAGACTTTGAGTGTGTGAGCTCTTTTGTTTCCAATACCcttacagttttacatcttttgAGTTGAAGACTTGGCTAAAGGTTTCCTGTGTCTTAGTGGGGGACGTTTCGGCAGCGACCTATATTGAATCTTTAGAGTGCCACATGACAAATCTGTAGGGTcttcccagcaaaccaaaattggttctgttAGGCTGCAGAAAATATTCTCATAACATGTAAACTGTCCAGTCGAGGTGAAGATTATgaaatgtttgtataaaacatttgcctgatgttacaagaacattcccagaacaaaTTATGTCTGTTCTGTAAACATTTCCAGAATGTTCCAtcaggttgtgggaacagtctagTGAGAAAATTGTGTGATATGTTCCCGAAACACAAAATCTGTCTAGTTGTGCGGAAGATTCTACAATGTTTATTTTAGGGTTCCAGAAACATTCCACTGATGTTACAACAATGTCCTCAGAACACATTTCGCCTGTTCTTTAACTGATCCCAGAATGTTTTATTAGGTTGTGGTAATACTGTagatatgttcccaaaacacaaaaacgGTCTAGTTGTGCTAACATTCAGACAATATTTGTATTAGGCTGCACAACACATTCCATTGATGTTGCAGGAATGTTGACAGAACAACCTTTCTGAGTTCTTTATGAATCTTGAAGAAATAAAGATATCCTCTCTTTTAGTAGAGTATACCTGAGCCTCAATTCCCCCGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480678 lncRNA upstream 83250 62529327 ~ 62606637 (+) True G424285
TU480683 lncRNA upstream 85801 62533513 ~ 62604086 (+) True G424288
TU480581 lncRNA upstream 256863 62416223 ~ 62433024 (+) False G424193
TU480582 lncRNA upstream 256863 62426403 ~ 62433024 (+) True G424193
TU480584 lncRNA upstream 320633 62322402 ~ 62369254 (+) True G424195
TU481568 lncRNA downstream 40033 62786959 ~ 62788098 (+) True G425085
TU481569 lncRNA downstream 41287 62788213 ~ 62788412 (+) True G425086
TU481574 lncRNA downstream 42102 62789028 ~ 62789271 (+) True G425090
TU481575 lncRNA downstream 43410 62790336 ~ 62790704 (+) True G425091
TU481581 lncRNA downstream 65812 62812738 ~ 62812939 (+) True G425097
XM_021601253.2 mRNA upstream 129336 62493156 ~ 62560551 (+) False hcn2
NM_001124448.1 mRNA upstream 141716 62493501 ~ 62548171 (+) True hcn2
XM_021603758.2 mRNA upstream 199095 62476874 ~ 62490792 (+) False bsg
XM_036978021.1 mRNA upstream 199095 62476874 ~ 62490792 (+) True bsg
XM_021603759.2 mRNA upstream 204540 62479785 ~ 62485347 (+) True LOC110524269
XM_021603762.2 mRNA downstream 26174 62773100 ~ 62785577 (+) False LOC110524272
XM_021603763.2 mRNA downstream 45053 62791979 ~ 62796480 (+) True LOC110524274
XM_021603764.2 mRNA downstream 50778 62797704 ~ 62802340 (+) False LOC110524275
XM_021603765.2 mRNA downstream 51037 62797963 ~ 62802340 (+) True LOC110524275
XM_021603767.2 mRNA downstream 61995 62808921 ~ 62821203 (+) False LOC110524276
TU480579 other upstream 382950 62283152 ~ 62306937 (+) False LOC110524265
TU480458 other upstream 584015 62105523 ~ 62105872 (+) True G424079
TU480287 other upstream 967863 61721537 ~ 61722024 (+) True G423922
TU478964 other upstream 1993982 60694257 ~ 60695905 (+) True LOC110524226
TU476694 other upstream 3745670 58942728 ~ 58944217 (+) True G420634
TU481721 other downstream 298164 63045090 ~ 63051530 (+) True G425224
TU482675 other downstream 929488 63676414 ~ 63684239 (+) True nfil3-4
TU483050 other downstream 1430102 64177028 ~ 64179386 (+) False sac3d1
TU483051 other downstream 1430102 64177028 ~ 64179386 (+) False sac3d1
TU483052 other downstream 1430102 64177028 ~ 64179386 (+) True sac3d1

Expression Profile