RNA id: XM_021603765.2


Basic Information

Item Value
RNA id XM_021603765.2
length 3028
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC110524275
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62797704 ~ 62802340 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTTTTCTCCCATGGAAGTATCCTCCCATTTTCCATAGGTTTCGCGAGGTTTGCATGGGCGGCAGTCTGCATTTCTCTGCAGGAAGAATTGAATATTTTTGGGATGAAATTCGTGTACAGTATTTGAATTTTTGGAGGGATGTCCAAGAAAAGGGGCAGAAAGCGGAGTAGCGGGGAGCTGAGTGATTCCACAGTGATGACCCCTGACCCCAACAGTCTCCTGGGAGTAAGAATACAGCACAATTGGAGGGAGAAGGGCAACCAGAGCAAATGGAAAGGCACTGTCTTGGACCGTCTCAGTGTCAACCCCTCACTATTTATGGTCAAGTACGATGGGTTTGACTGTGTCTACGGCATCGAGCTATTCAAGGACGAAAGGGTTTCTAATCTACAGGTCCTGACAGAGAAAGTTGTCAACAACAAGATCAAGGTTCCTCATGGGGCGGAGGAGTTGGTAGGCAAAGCGGTGGAACACCTATTTGagaaggaggatggagagaagaatGAGTGGCGAGGCATGGTCCTCTCCAGGGCTCCCATCATGACTAACTGGTATTACATCACCTATGAGAAGGACCCCGTGCTCTACATGTACCAGTTGTGGGACGACTACGCAGATGGAGATCTCAGGATCTTACCTGAAGCAGAAAATAAGCACTTGCTTCCGGCCGACCGAAAGCCCGGCGAGGAGACTGAGAGCTTAGTGGGGAAGCAGGTTGAGTATGTTACTGACAAAGGTGTGAAGCGAACAGGCCTGGTGATCTACCAAGTCCCTGCCAAGCCTTCTGTATACTACATCAAATACGACGATGACTTTCACATCCATGTCTACGACCTGGTCAAGACCACCTAGGACACTTGATTGCTCACTCCATTGCTTACTTTTCACgtatcctcctcactctctctccatctctcttaagGTCCTGGACGGTATAACAGTTACGCTTTATTATTCAGGAAGTGCAATCTTTTATTCCACATTTAAAACTAGTTCTATGGTATGCACAGCAGAACTGTAGCAATGCTATTGTAGGCCACTAGGAGGAGAGTGGGAACATGTACACTTGGAAGGACCTATTTAAACCTCCTCACTTCTTCAGTTACCCCATTTGGTTGTTGTGCTGCACAGTAGATTCACATCTCGGACAGTCCAGGAGTGCACCTTGCCCTACAATGACAGACTTACTGTAAAGTGCAATAACGACCGCGTTTGAATTGTCTCCCACATCCTGATGCTCAATTATCTTTATTCAAAGCTGAACTGAATTATATATTATAAAACTAATAGTTAAATCTGGCCCCGATAGCCATTCATATGTGGTCCTTGAATGACCAAACAGCAAGCATGATGTATAGGTGAATATTTGTAGAGACTAGTTTGAGCTGTAGTGTTCAGTGAAGCCTTTGAAGGAGAAATGCAATAAGCTGTGATGCCCCTGAACgtataatttttttgtttttaaataatgCCTTTATTAATAGGCAACTATGTTTGATTTATGTGTCAGTCAGTTCATAGACAATCATTCCTTGATGAACCCACAGTGCTATCATTGGCTTCATAGTACTGGGTTGCACTGGCCTAGGAGTACTGATGATTCAATTACTAGTTTGAACATCAAAACAATTATTCATAATGCTGAATCAAGACTTGTTAGAAACAAGGAATACAGGTCTTCATAAAGTTCGGGCAAGTTTTTCCTGACCAGACAAACCTGATTAATTTGTAGAGATTGGGAAAAGGCCTTAACAATACCTGACCAGGTTCAGAATCCCAACATCATCAGACTATGATTAGCTCAAGTGGAATAGAGGCAGTGCTTTACACTACATTCTGATCTTGAATAGAAAACAAACATAAAGTGCCTTCAGGCTGATCATGTCgccatactgtatatatttgctAACCGCTCACAATTTTATTCCATTTACTGTTAAGGCCACTATTTGGTCAGTATTAGTCAAAGTAAAAAATGCTTTAATGAAAAAGTGTCAAATGCTGCGTACCAGGTTTTTGCTATTGTCTGTTTGTATAAGAGGATATGTGCAATGTTTGGCAGTTAATGCAGTATAAGACTATTTCCTCCAATCGAACATCCATGACCGTTGATTAGTCtcattcaaatgttgatattgtaGGGTGCACTTTAAATTACTCACATAAATATGCTAAAGATTTGGCACATTGTCTTTTTCTGTCAAGATACTTTTTTTGTGCAAGAACAAGTGGCATATTGCAGCATCGGTATATCATAATGGTAAAAACGCATGGAGAAAAGAAAAGTTATAACACGCATACAGTATTTAATCTAACTTTTTTGTGTAGTGTATTGTAAATGTATGCTGTTGTGAATACTCCtgttatattgtaaatatcccaTTGAAATACCAGCTTTAAAGTCCATCTAGAATTCTCACCTAGAGAAATGCTGCAAAGACTGCATTCAAAAAGCCTGCAGCCTGGCTGGCTTCActttttaaacttattttaaaGACTTGGGAGCTACAGTACATAATGTAATCCAAGGAAGTCCAAAACGCAAATGTTTTGGCTAGAAGTATTTAAATTTAGTCTTCTGTCCTTAGTCTCACTCCagggcatacagtgcattcatttACAGTGCATTGGTCCATGGTGTACATAAGGTTCATTCTATCGATTGTCAGATTTGCATGCATCACTTGAATGCAGCCTTGAGTGCATTCAAGCATATTGGTTATTTTGACAGTtgcagaggtaaaaaaaaatattgtgggAGTCTTTGCAGACCGATTTTACTAAAATGTTTATGTAGAAAATgtgactgtaaaaaaaaaaacattgtcagTGCTTCTTTGCTACTTGTATCACCACCAGTTGTGCTGTGGTGTTTCTATGTACAGTAAAATGAAACTCCAAAAGATTGTGCACTCTTCTGTTATCCTCCATCTTTCATTCCTCCCAGGTCTGGAATTGTAGCAATTACCAACCCATTTGTGTAATTATTTTCATCATGAGTAATAAAGTTAGTTTTTTTTTGCACA

Function

GO:

id name namespace
GO:0007276 gamete generation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481575 lncRNA upstream 7259 62790336 ~ 62790704 (+) True G425091
TU481574 lncRNA upstream 8692 62789028 ~ 62789271 (+) True G425090
TU481569 lncRNA upstream 9551 62788213 ~ 62788412 (+) True G425086
TU481568 lncRNA upstream 9865 62786959 ~ 62788098 (+) True G425085
TU481541 lncRNA upstream 25694 62733477 ~ 62772269 (+) True G425058
TU481581 lncRNA downstream 10398 62812738 ~ 62812939 (+) True G425097
TU481603 lncRNA downstream 51687 62854027 ~ 62854240 (+) True G425119
TU481621 lncRNA downstream 93061 62895401 ~ 62900496 (+) False G425136
TU481622 lncRNA downstream 93061 62895401 ~ 62900496 (+) True G425136
TU481651 lncRNA downstream 131917 62934257 ~ 62940159 (+) True G425165
XM_021603763.2 mRNA upstream 1483 62791979 ~ 62796480 (+) True LOC110524274
XM_021603762.2 mRNA upstream 12386 62773100 ~ 62785577 (+) False LOC110524272
XM_021603761.2 mRNA upstream 51037 62689887 ~ 62746926 (+) False LOC110524271
XM_036978025.1 mRNA upstream 51037 62739754 ~ 62746926 (+) True LOC110524271
NM_001124448.1 mRNA upstream 249792 62493501 ~ 62548171 (+) True hcn2
XM_021603767.2 mRNA downstream 6581 62808921 ~ 62821203 (+) False LOC110524276
XM_021603768.2 mRNA downstream 7854 62810194 ~ 62821203 (+) True LOC110524276
XM_021603770.2 mRNA downstream 83061 62885401 ~ 62892180 (+) True LOC110524278
XM_021603788.2 mRNA downstream 494743 63297083 ~ 63303403 (+) False LOC110524284
XM_021603789.2 mRNA downstream 496390 63298730 ~ 63303244 (+) True LOC110524284
TU480579 other upstream 491026 62283152 ~ 62306937 (+) False LOC110524265
TU480458 other upstream 692091 62105523 ~ 62105872 (+) True G424079
TU480287 other upstream 1075939 61721537 ~ 61722024 (+) True G423922
TU478964 other upstream 2102058 60694257 ~ 60695905 (+) True LOC110524226
TU476694 other upstream 3853746 58942728 ~ 58944217 (+) True G420634
TU481721 other downstream 242750 63045090 ~ 63051530 (+) True G425224
TU482675 other downstream 874074 63676414 ~ 63684239 (+) True nfil3-4
TU483050 other downstream 1374688 64177028 ~ 64179386 (+) False sac3d1
TU483051 other downstream 1374688 64177028 ~ 64179386 (+) False sac3d1
TU483052 other downstream 1374688 64177028 ~ 64179386 (+) True sac3d1

Expression Profile