RNA id: XM_021603769.2


Basic Information

Item Value
RNA id XM_021603769.2
length 1065
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC110524277
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62803832 ~ 62808176 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgcaatgtaaaaaaaaaaaaagaaaaaaaactttattgACTCACAGCGTTTGCCCTTCAATGTAGCCGGTTACTATTCGTGGTCGAGCTCATTTATTTCATGCTTGCTGTCTAAATAAacgttcatttaaaaaaaatacattgattTACCCGTGACACTATGGCTGGCAAGATTTTACCTGTTCTAAAGTTGGCGACTAAGGTGACCATTGCAGGAGGTGCTTTGTATGTTGCCTATGATTCTGGACTATTAGGGGGAAGGGAGCAGGGCTCCGAGGTCCTAGGAAAAGCTAAAGCTGCCATTCCCCCTGCAGTGGATGAGTGGGTGAAGTACTTTGGCTTTGAGCTTCCAGCTTTCCCTAAAATCGGATTTGCCCCTGTTGAAGCGTGGAACTCGGGGGTGCACTCTTCCATATCTGCTCTCTCATCGGGCCCTACAGCAGTGGGTGACTACACCAACCAAGGCTTGCAGTACCTGAAAGACCTCGCCAAATGAGTGACATCATGCAACTAGCAGACATTTAAGAACCAAATCCTCTGGAGTAACGCGACTGGTGCAAATACATACAGCCCTCCTGTAAAAGTCACTTGCTTGCTTTGAATGCAAAAAAATGCAGTGGTACAGTAACATTTGCAGAATTAGGTTTAGGACAATTATACtttttttgtttagtttagtTGCTGATAATGCCAGGACTCAATATttgcattttgttgtgttgaCAGCAATTTGTCAACACAAGCAGATAACAATCTTCTTTTACCCTACTTTTTGAGTCAAATTATGACAGAACTTGGGTACCACAGAAAGACCTGCACCCAAGAGAGAAATCTAAGTATATCCTGATGGACATGTTTAGTGCTATCATGTCTTGTGTGTGTACACATTGTTAATTTTGCGATTTTTATTTAAGACCGATTATATATTGTTCTGGCTTTGACCCAATTCCCAACCTATCCCATCATGATCCAACATATTTTATACAGAAAGAATgtcttgtgtgtgtatatagatattTAACCATTTTCTGAGTCTATAATAAACCTAAACATGTCAGTTGTGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU482119 lncRNA downstream 7284 62795736 ~ 62796548 (-) True G425568
TU481403 lncRNA downstream 197019 62529316 ~ 62606813 (-) True G424927
TU481376 lncRNA downstream 309043 62494489 ~ 62494789 (-) True G424903
TU481350 lncRNA downstream 318256 62476932 ~ 62485576 (-) True G424878
TU481289 lncRNA downstream 372175 62427796 ~ 62431657 (-) True G424830
TU482140 lncRNA upstream 383 62808559 ~ 62809332 (-) True G425587
TU482141 lncRNA upstream 2517 62810693 ~ 62810905 (-) True G425588
TU482146 lncRNA upstream 6636 62814812 ~ 62815027 (-) True G425593
TU482147 lncRNA upstream 7349 62815525 ~ 62815727 (-) True G425594
TU482165 lncRNA upstream 34956 62843132 ~ 62843481 (-) True G425609
XR_005051829.1 mRNA downstream 6592 62796617 ~ 62797240 (-) True LOC118964634
XR_005051828.1 mRNA downstream 123617 62586238 ~ 62680215 (-) False LOC110524270
XM_036978024.1 mRNA downstream 123617 62590575 ~ 62680215 (-) True LOC110524270
XM_036978023.1 mRNA downstream 123618 62586238 ~ 62680214 (-) False LOC110524270
XM_021603756.2 mRNA downstream 362038 62328839 ~ 62441794 (-) True LOC110524266
XM_036978030.1 mRNA upstream 111402 62919578 ~ 63214799 (-) False LOC110524279
XM_036978031.1 mRNA upstream 111402 62919578 ~ 63214799 (-) False LOC110524279
XM_036978032.1 mRNA upstream 111402 62919578 ~ 63214799 (-) False LOC110524279
XM_036978033.1 mRNA upstream 111402 62919578 ~ 63214799 (-) False LOC110524279
XM_036978034.1 mRNA upstream 111402 62919578 ~ 63214799 (-) False LOC110524279
TU481131 other downstream 802523 61998526 ~ 62001309 (-) True G424678
TU481096 other downstream 876410 61888198 ~ 61927422 (-) False G424649
TU481097 other downstream 890063 61888198 ~ 61913769 (-) True G424649
TU480929 other downstream 1144247 61659033 ~ 61659585 (-) True G424502
TU480919 other downstream 1152057 61649967 ~ 61651775 (-) True G424499
TU482168 other upstream 41828 62850004 ~ 62850247 (-) True G425612
TU482212 other upstream 86483 62894659 ~ 62900503 (-) True G425647
TU482441 other upstream 451472 63259648 ~ 63260469 (-) True LOC110524282
TU482381 other upstream 492748 63300924 ~ 63303394 (-) True G425810
TU483573 other upstream 1475792 64283968 ~ 64286359 (-) True LOC110522986

Expression Profile