RNA id: XM_036978037.1



Basic Information


Item Value
RNA id XM_036978037.1
length 1973
RNA type mRNA
GC content 0.53
exon number 12
gene id LOC110524279
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62919578 ~ 63214903 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGTTTCGGATAGAAAGTGAGCCTGGTTTCCAGCTGagtgcttgctctctctctctctctctgtgtgtgttgtcattattATCCAGTCTGCTCCCAGCTCAGAATGGCCAGATTCACTCAGACTGAAACAAGAAGGCAGCAGCAACCACAGCAGCCCCATCCCGCTCACACCAGCCTGGTTTTCACTGGACCTGGGGCAACACCGAtccaacaaccactactacttaTCCCTCACCAGCACCAGTACTCTCAGATCACATTTCCTAAACCCATGAACGGGTCAGAATCCATTTCAATTCATCCGGAGAGCGGCAACATGAAAGACCAAGATGCCATAAAGCTGTTTATCGGGCAGATACCGCGGAACCTAGAGGAAAAAGACCTGAAACCTCTGTTTGAACAGTTTGGGAAAATCCACGAACTGACTGTTCTGAAGGACCGATACACCGGCATGCACAAAGGCTGCGCGTTCCTCACCTACTGCGCCCGCGAGTCGGCCATCAAAGCCCAGAACGCCCTCCATGAACAGAAAACACTGCCAGGGATGACTCGGCCCATCCAGGTGAAGCCGGCTGACAGTGAGAGTCGTGGAGAAGACAGGAAGCTGTTTGTGGGGATGCTAAACAAACAACAGACTGAGGAGGATGTGTACCGCCTCTTTGAGCCCTACGGAGTCATCGAGGAGTGCACCGTCCTAAGAGGTCCCGACGGAAACAGCAAAGGCTGTGCCTTTGTAAAGTTCTCCACACATGCTGAGGCCCAGTCTGCAATCAGTGCCCTTCATGGCAGCCAGACCATGCCAGGCGCATCCTCCAGCCTGGTGGTGAAGTTTGCCGACACCGACAAGGAGCGCACCATCCGCCGCATGCAGCAGATGGTGGGCCAGTTTGGCATCTTTAACCCAGCCATCGCCCTTCCCTTCAGCACCTACAGTACCTACGCACATGCACTCATGCAGCAGCAGGCAGCCATCATGGCAGCGAGCCACGGCGGCTACCTGACGCCCAGCATGGCCTTCCCCGCCACCCAACTCCACCAGATGGGGGCACTCAGCATCAACGGCCTCCCACCCAACTCCATGACCCCGGTGTCTGGGGAGTTCCACCAGGCACTGGGTCTTAGCTCTCCACCAGCCAACATCACCACTCCCAGCATCGTCACTCCCATCGTCAACGGCTTCACGGGCATCCCCCACCATCAGCCCAACGGACATCCCGCCGTGGAGACCATGTACAGCAACGGCCTGCCGTCCTACTCCACCCAGAGCCCCACCGCTGCAGACACCCTCCAGCAAGCCTTCACCGGAGTACAGCAATACACAGCTATCTACCCAGCTGGCACACTGACTCCCATAGGCCAGACACTGCCTCAGCCATCACAGGTCATCCAGCAGCAGCaacagagagaagGGCCCGAGGGCTGTAACCTGTTCATCTACCACCTGCCACAGGAGTTTGGAGATAATGAACTCATGCAGATGTTTCTGCCATTCGGGAGCGTCATCTCCTCCAAGGTCTTCATGGACCGAGCCACCAACCAGAGCAAATGCTTCGGGTTTGTGAGCTTCGACAACCCAGCTAGCGCACAGGCAGCTATTCAAGCCATGAACGGCTTTCAGATTGGAATGAAGAGGTTGAAAGTCCAGTTAAAACGACCGAAGGATGCCAGCCGCCCTTACTGACACAACCTAGCCCTCAGTGTTCACTGCAACAGCACAGGTTTTGAGGACAACTGAAGATATCTTGGAGTTCAACTTTTTTTCTTTGAAAACAAaaattatgtttaaaaaaaatccacaCAAGGAATTTTCGAAGACATATCAGCATTTACTTATGAAGAAGACGTAGGCTATTGCAATGATGAAGAGATTGAAGAAGGTGTGAAGGAGTTGGCAGCAGCTACACCGAAGGACTTCAACGCAACAAACGGCACAGTGCAAGAAATACaagagaagtaaaaaaaaaaaaaaaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU482187 lncRNA downstream 1225 62917973 ~ 62918353 (-) True G425623
TU482183 lncRNA downstream 2855 62863734 ~ 62916723 (-) True G425621
TU482167 lncRNA downstream 69987 62849205 ~ 62849591 (-) True G425611
TU482166 lncRNA downstream 72651 62846709 ~ 62846927 (-) True G425610
TU482165 lncRNA downstream 76097 62843132 ~ 62843481 (-) True G425609
TU482444 lncRNA upstream 42846 63257748 ~ 63259454 (-) False LOC110524282
TU482438 lncRNA upstream 43118 63258020 ~ 63259267 (-) False LOC110524282
TU482440 lncRNA upstream 43118 63258020 ~ 63259454 (-) False LOC110524282
TU482453 lncRNA upstream 54599 63269501 ~ 63269818 (-) True G425870
TU482462 lncRNA upstream 72170 63287072 ~ 63287395 (-) True G425878
XM_021603769.2 mRNA downstream 111402 62803832 ~ 62808176 (-) False LOC110524277
XM_036978027.1 mRNA downstream 114275 62803832 ~ 62805303 (-) False LOC110524277
XR_005051829.1 mRNA downstream 122338 62796617 ~ 62797240 (-) True LOC118964634
XR_005051828.1 mRNA downstream 239363 62586238 ~ 62680215 (-) False LOC110524270
XM_021603786.2 mRNA upstream 42695 63257597 ~ 63260481 (-) False LOC110524282
XM_021603787.2 mRNA upstream 59729 63274631 ~ 63282648 (-) True LOC110524283
XM_021603790.2 mRNA upstream 88862 63303764 ~ 63314291 (-) True btbd2a
XM_036978050.1 mRNA upstream 165897 63380799 ~ 63399318 (-) False si:dkey-110c1.10
XM_036978049.1 mRNA upstream 165897 63380799 ~ 63402249 (-) True si:dkey-110c1.10
TU482212 other downstream 19075 62894659 ~ 62900503 (-) True G425647
TU482168 other downstream 69331 62850004 ~ 62850247 (-) True G425612
TU482117 other downstream 111456 62803938 ~ 62808122 (-) True LOC110524277
TU481131 other downstream 918269 61998526 ~ 62001309 (-) True G424678
TU481097 other downstream 1005809 61888198 ~ 61913769 (-) True G424649
TU482441 other upstream 44746 63259648 ~ 63260469 (-) True LOC110524282
TU482381 other upstream 86022 63300924 ~ 63303394 (-) True G425810
TU483573 other upstream 1069066 64283968 ~ 64286359 (-) True LOC110522986
TU484037 other upstream 1351779 64566681 ~ 64568380 (-) True G427287
TU484034 other upstream 1486972 64701874 ~ 64706025 (-) False LOC110524330

Expression Profile


XM_036978037.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.8.
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XM_036978037.1 Expression in each Bioproject

Bar chart with 6 bars.
XM_036978037.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.