RNA id: TU482444


Basic Information

Item Value
RNA id TU482444
length 1707
lncRNA type sense_over
GC content 0.43
exon number 1
gene id LOC110524282
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63257597 ~ 63260481 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCAGCTCGGAGGGCTCGGAAGGCCGCCACAAGCACCGCTCCAAAGTCACCAAGTCGGTGGCCATCGTGGTGCTGTCCTTTTTTCTGTGCTGGCTGCCCAACCAGGCGCTGACACTGTGGGGCGCGCTGATTAAGTTTGACCTGGTGCACTTCAGCAACGCATATTACAACGCCCAGAACTACACCTTCCCTCTGACTGTATGTCTGGCTCACACCAACAGCTGCCTCAACCCTGTGTTGTACTGCATAATTCGCCGTGAGTACCGCACAGGCCTCAAAGAGCTGCTGCTGCGCGCCACACCCTCCCCAAGGAGCCTGGCCAACCTGCTGCCCCGCAAGGCCAAGGTGGCAGAGGCTCCCCCTGACATGGTGCTGGTCCAGATGGATGTTTGAGGCATTTCATGAAATGCGTTTGTTGTGATTGAGGGAACAGCACCATCACAAGGAATGCCCATTAGGATGTGCCCTATTTTCTTTCCCCCTACTCAGATTCTCTTTGCCAGATGTGTTTTTCATCTGTCTCCTCCGGGGCTTCTCTGCCTTCCCGTAATTTGCCATGAATATGTAACAAGTAGCACTCATGTCAGGGGTCTCAATGAGTTCAAACCATAATGCTTCACCTTCTGCTTCGTACCTGCCAGATAAGACACAAGTCGCCATTCCACCTATGATCTCCATCAATTATCCATTTGTTTTCAATCATTTGAATTGGGTAATGTGCACTCAACAGAACACACTTTCTGCCGCGTATTGTATTCACGAGATGATGAATAGATGAGACTGTCCATAGGATGCAAGAGTTTATTCAGACACACTAATGTCTGTGCAGGGTGTTATTGTCATGCAATTTAGTACCTTGTTATTGCATTTGTTCATGTCCTCCTATGCTAGAACTGTCCTTGGTAGGTGTATCGATCCTTTAAATCATCAAATAAAACAGGAACTCAATTATAATCTATTGATATGGTTCATTTGATATCATTTTGATTGGTGTTATTGTTATTACCAGAGCCATGTTGGCAAATGTCTCTCTCCAGGAAGCTTTGTTGTGTGCGCAAGCAACCGATTAGTAGAGTATTTTTTACtccaaataatatatatttttctgatATAGACAAATAAAGGAGTGTGGTGGGAACACATTGTATATGTGATAGAGCTGAATAGTTGATCAGTGGAACATACAGAGAGCAAGTTGTAGGTCTTACATACTGCTGTACGCAAGGTCAGGGTCTCTTAGTGTGTCCACTAGAACGTAAGAAAACTATTTTGATTTGAAGGAATAGAAAAGTTGCATTACATTGCAACAACAAGACGACCTTGCTTACAGTCTTTGCTTTCTCTGTCTGTTAAACGTGAGCTGCGCACACACACTGAGCCGCTGCTTTGAGCCGTACAAAGTGAATTTATTATGGGATATCATCCTCCTACCCGTTCTTATATCTATATTAATAATTCAGTTTGAaggaaatatatttaaaaaagtatGAAATAGTCGAAACCTTCAATGGAATGTGAACAAGTCTCTGTGAAATCATGTACTGTAAAGGTTATATTGCAAGAGCTACACGATTACTAATGTGATTCACCATTTTTTGTAATTGTGTTGCCTTGATCTCATTTGCTATATAAACTGTTTTAGTAAAGATTGAAACAAGATTTTAGTAAAATTGCAAGTGCATTATGTAGAACTAAGAAATAAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU482349 lncRNA downstream 73288 63162393 ~ 63184460 (-) True G425781
TU482319 lncRNA downstream 138060 63109801 ~ 63119688 (-) True G425751
TU482188 lncRNA downstream 190554 63037824 ~ 63067194 (-) True G425624
TU482281 lncRNA downstream 227363 63027607 ~ 63030385 (-) True G425713
TU482256 lncRNA downstream 281697 62975015 ~ 62976051 (-) True G425689
TU482453 lncRNA upstream 10047 63269501 ~ 63269818 (-) True G425870
TU482462 lncRNA upstream 27618 63287072 ~ 63287395 (-) True G425878
TU482465 lncRNA upstream 30264 63289718 ~ 63290012 (-) True G425881
TU482396 lncRNA upstream 30992 63290446 ~ 63290777 (-) True G425820
TU482472 lncRNA upstream 63017 63322471 ~ 63322852 (-) False G425886
XM_036978029.1 mRNA downstream 42845 62919578 ~ 63214903 (-) True LOC110524279
XM_036978037.1 mRNA downstream 42846 62919578 ~ 63214902 (-) False LOC110524279
XM_036978038.1 mRNA downstream 42846 62919578 ~ 63214902 (-) False LOC110524279
XM_036978030.1 mRNA downstream 42949 62919578 ~ 63214799 (-) False LOC110524279
XM_036978031.1 mRNA downstream 42949 62919578 ~ 63214799 (-) False LOC110524279
XM_021603787.2 mRNA upstream 15177 63274631 ~ 63282648 (-) True LOC110524283
XM_021603790.2 mRNA upstream 44310 63303764 ~ 63314291 (-) True btbd2a
XM_036978050.1 mRNA upstream 121345 63380799 ~ 63399318 (-) False si:dkey-110c1.10
XM_036978049.1 mRNA upstream 121345 63380799 ~ 63402249 (-) True si:dkey-110c1.10
XM_021603816.2 mRNA upstream 142992 63402446 ~ 63409136 (-) False LOC110524293
TU482212 other downstream 357245 62894659 ~ 62900503 (-) True G425647
TU482168 other downstream 407501 62850004 ~ 62850247 (-) True G425612
TU482117 other downstream 449626 62803938 ~ 62808122 (-) True LOC110524277
TU481131 other downstream 1256439 61998526 ~ 62001309 (-) True G424678
TU481097 other downstream 1343979 61888198 ~ 61913769 (-) True G424649
TU482441 other upstream 194 63259648 ~ 63260469 (-) True LOC110524282
TU482381 other upstream 41470 63300924 ~ 63303394 (-) True G425810
TU483573 other upstream 1024514 64283968 ~ 64286359 (-) True LOC110522986
TU484037 other upstream 1307227 64566681 ~ 64568380 (-) True G427287
TU484034 other upstream 1442420 64701874 ~ 64706025 (-) False LOC110524330

Expression Profile