RNA id: XM_021603787.2


Basic Information

Item Value
RNA id XM_021603787.2
length 1874
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC110524283
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63274631 ~ 63282648 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTTGGACCTCAGAACACGAGCAGTGAGATACAGTAGAGACACACGGTCATCTAGAACAGAGCCCCTTCACAACAAAGGAAACTGACCATTTTACTGGATTTATCTTGTTTTGGGGAGTTCCTCCCTGTTCCACCCTAGTTCTGAAATGATGGACCACTACTCAGACCAGGGTTGCGACGGGATTGAGCTGCTTGATTTGCTGTTTGATCAGAACGATGGCATCCTCCGTCACGAGGAGATGGGGCACCATGGGAACCATGCCTGGCCCATTCACAAGCCAAACATGCTGCGTCCAACAAAGCTACAGGGCGAGGACTTCTTGAACACCCTCCTGAGTGACTCGGTTTCGGGGTCACCCCTATGGTCTCCCTCTCCCAGTGACAGTGGAATCAGTGAGGACCCCCACTCCGATCAGATGGACAGCCCCAAGCGCCCTGAGAGTCCTCCCACAGAGCCCCATTTCCTCCCCCCTCAGCCACACACCAGGGCCGCCCTGGACACAGACTTCTCCATTAATATCAATGGCTGGGACTCAGGCTTCTACCCAGGAAGGACTGATGGGACAAAGTGTTCCTCTGATGTACACAAAACCCAGCTGACCTCTAGCTTTCCCCTCACTGTCAAGGAGCTACTGCTCTCTGGTACATCTGAGCTGCCCCCACAGCAGTCCCAGCAGTCCTTCCAAGAGTTGATTCTCAATGAGGACGAGAAAAAGCTGCTGGCCAAGGAGGGGGTGACTCTGCCTAGCCAACTACCCCTCACCAAGTATGAGGAGAGGATTCTGAAGAAAATTCGCAGAAAAATCCGGAACAAGCAGTCGGCCCAAGAGAGCAGGAAGAAGAAAAAGGAATATATTGATGGTCTGGAGAGCAGGATGACTGCCTGCAACACACACAACCAGGAgctgcagaggaaggtgttccaGTTGGAGAAATGCAACACGTCTCTGATGGAGCAGCTGCGTAGGATGCAGACTCTGGTAATGAACGGCTCTAAAAAGGCCGCCCAGGCTGGGACCTGTGTTCTGGTGCTgctcctgtctttctccctcatCCTCTTCCCAAACCTGAAACCTTTCTCCGAGCCCAAGGTCAGCCAAGGAGGGGACTTCAGCCCAGTGAGAGTACAGTCACGATCCCTGCACAACCTCCAGTCTTCCAGAGTGCTGCATGTCATTGACCAGCCGTATCATACTGCCGACGACGAGCCCAAGTCTCCGCACCACCATTTCCCAGGAGACCAGGGGGTAAATGAGATGACCTCTCTGCTGGGTAAGCTGGGCACCGGTGACGGCAGCCAGGGGCTGTCCAATCTCGACCCCATGTCTCCCAACAATAGCCTGGATGAGCAAGCCCATTTCCACGGGGACCCCATTACCGGCCACATAGCTACAGTGACCTTGAATCCACACCGCAGAGCCACACTACGCCCACATGCTGATGACATGTGATTGGATAGAGTTTTCCCAGCAGGATTCTGCTCTGCTCCCATCTCCACACATTTCACATGATGAAACATAGAGTAGCACACACCTAAGCCTCTTTTTTACACTGTTAGGGTAATAAGAAATAAATCATTCCTGCTTTTGCCtcttatattttatgtatatgcttttttcttgtttgttacactgttttgtattgttttcAAGATGAATTGAGCATCTCTTGCCCCTCCATGACTGTTTTAACATTGACAGTGTAGATTTGTGTATTTTGAGAAAGGTAATAATTCTTGTTTTTCATAACTGTGATGGTGTGTACAATTTTGAGCTTTTACAAACCATTTTGAGATTCATTTTGCATGTACACTACGAAGCAATAACTTTATTGACAATCTTGCTACAAATTAATAAAACTGTCTCAAACTTTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU482453 lncRNA downstream 4813 63269501 ~ 63269818 (-) True G425870
TU482444 lncRNA downstream 15177 63257748 ~ 63259454 (-) False LOC110524282
TU482440 lncRNA downstream 15177 63258020 ~ 63259454 (-) False LOC110524282
TU482438 lncRNA downstream 15364 63258020 ~ 63259267 (-) False LOC110524282
TU482349 lncRNA downstream 90171 63162393 ~ 63184460 (-) True G425781
TU482462 lncRNA upstream 4424 63287072 ~ 63287395 (-) True G425878
TU482465 lncRNA upstream 7070 63289718 ~ 63290012 (-) True G425881
TU482396 lncRNA upstream 7798 63290446 ~ 63290777 (-) True G425820
TU482472 lncRNA upstream 39823 63322471 ~ 63322852 (-) False G425886
TU482470 lncRNA upstream 39915 63322563 ~ 63322852 (-) False G425886
XM_021603786.2 mRNA downstream 14150 63257597 ~ 63260481 (-) False LOC110524282
XM_036978029.1 mRNA downstream 59728 62919578 ~ 63214903 (-) True LOC110524279
XM_036978037.1 mRNA downstream 59729 62919578 ~ 63214902 (-) False LOC110524279
XM_036978038.1 mRNA downstream 59729 62919578 ~ 63214902 (-) False LOC110524279
XM_036978035.1 mRNA downstream 59832 62919578 ~ 63214799 (-) False LOC110524279
XM_021603790.2 mRNA upstream 21116 63303764 ~ 63314291 (-) True btbd2a
XM_036978050.1 mRNA upstream 98151 63380799 ~ 63399318 (-) False si:dkey-110c1.10
XM_036978049.1 mRNA upstream 98151 63380799 ~ 63402249 (-) True si:dkey-110c1.10
XM_021603816.2 mRNA upstream 119798 63402446 ~ 63409136 (-) False LOC110524293
XM_021603814.2 mRNA upstream 119798 63402446 ~ 63409138 (-) False LOC110524293
TU482441 other downstream 14162 63259648 ~ 63260469 (-) True LOC110524282
TU482212 other downstream 374128 62894659 ~ 62900503 (-) True G425647
TU482168 other downstream 424384 62850004 ~ 62850247 (-) True G425612
TU482117 other downstream 466509 62803938 ~ 62808122 (-) True LOC110524277
TU481131 other downstream 1273322 61998526 ~ 62001309 (-) True G424678
TU482381 other upstream 18276 63300924 ~ 63303394 (-) True G425810
TU483573 other upstream 1001320 64283968 ~ 64286359 (-) True LOC110522986
TU484037 other upstream 1284033 64566681 ~ 64568380 (-) True G427287
TU484034 other upstream 1419226 64701874 ~ 64706025 (-) False LOC110524330
TU484039 other upstream 1443279 64725927 ~ 64732972 (-) True LOC110524330

Expression Profile