RNA id: XM_021603788.2


Basic Information

Item Value
RNA id XM_021603788.2
length 3134
RNA type mRNA
GC content 0.54
exon number 13
gene id LOC110524284
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63297083 ~ 63303403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cGTCAAACCTCATCGAAGAAGAAAAGCGGATGTGTACAACAGTCAGCAGTCTATTTTTGCACCTAGGTGTGGCGCACAAGCGATGACTCTTTGCTTGATGTCTGGATGTTGATTCGGCCTAATTTCGTATCAGTATAAATATTTCGTCAAAGCTTGTAGGCCCACCAGCGTAAAATGCTAGCTACAAATGTTAAAAGCAGAGAAGTTGTCTCAAAAAGCCAAAGTACCCCGCTTTGTACAGAGCGTGTCACGGTACGTCGTCACGAAGCACGCCAGCAGTATAAAACCGTTCCTGTTGACGTAACCCAGTCTCTTCCCTGCCTATGCCCTCGTGAGGTGGGCAGTGTCATATCGTGTGTCTTCGTTTCCACTAAGCGAATCCACAACCATCCGTCAAAATGGTGAACTTTACCGTAGACCAAATCCGTGCCATCATGGACAAGAAGTCCAACATCCGTAACATGTCTGTGATTGCGCACGTCGACCATGGTAAGTCCACCCTGACAGACTCGCTGGTGTCGAAGGCTGGTATCATCGCAGGTTCCCGCGCCGGAGAGACCCGCTTCACCGACACACGAAAAGACGAGCAGGAGCGCTGCATTACCATCAAGTCAACCGCCATCTCAATGTACTACGAGCTCTCGGAGAACGACATGGCCTTCATCAAGCAGTGCAAAGATGGTGTTGGGTTTCTCATCAATCTGATTGACTCTCCAGGCCACGTTGACTTCTCCTCTGAGGTCACAGCCGCTCTCCGTGTCACTGACGGGGCCCTGGTTGTTGTGGACTGCGTGTCAGgtgtgtgtgtgcagaccgAGACTGTGCTCAGGCAGGCCATTGCAGAGCGTATCAAGCCTGTGCTGATGATGAATAAGATGGACCGAGCCCTGCTGGAGTTGCAGCTGGAGCCAGAGGATCTGTTCCAGACCTTCCAGCGCATCGTGGAGAATGTGAACGTCATCATTGCCACCTACGGAGAGGATGAGGGTGGTCCCATGGGCGCCATCATGATTGACCCAGTCATTGGAACTGTTGGCTTTGGGTCCGGACTTCACGGATGGGCCTTCACCCTGAAGCAGTTTGCTGAGATGTACGTGATGAAGTTTGCTGCCAAGGGTGATGCCCAACTAGGACCAGCAGAGCGCTGCAAGAAGGTGGAGGACATGATGAAGAAGCTGTGGGGTGAAAGGTTTTTTGACCCTGCCACTGGCAAGTTCAGCAAGTCGGCCACCGGACCTGATGGAAAGAAGCTCCCGCGTACGTTTTCTCAGCTTGTGCTGGACCCCATCTTCAAGGTTTTCGATGCCATCATGAACTTCAAGAAAGAGGAAACGGCCAAGCTGATTGAGAAGCTGGACATCAAGCTGGACAATGAGGACAAGGAGAAGGAGGGGAAGCCCCTGCTGAAGGCTGTGATGCGCCGCTGGCTGCCAGCTGGAGAGGCCCTGCTCCAGATGATCACCATCCACCTGCCCTCCCCTGTCACCGCCCAGAAGTACCGCTGTGAGCTGCTTTATGAAGGACCTGGTGATGATGAAGCTGCCATGGGTATCAAGAACTGTGACCCCAAGGCTCCTTTGATGATGTACATCTCCAAGATGGTGCCCACCACCGACAAGGGTCGCTTCTATGCCTTTGGCCGTGTCTTCTCCGGCTGCGTGTCCTCTGGCCAGAAGGTGCGCATTATGGGACCAAACTTCACCCCTGGAAAGAAGGAGGACCTCTACCTCAAACCAATTCAGAGGACCATTCTGATGATGGGACGTTACATTGAACCTATCGAGGACGTGCCATGCGGGAACATTGTTGGGCTGGTTGGAGTGGACCAGTACCTGGTGAAGACCGGTACCATCACTACCTTTGAGCAGGCCCATAACATGAGGGTGATGAAGTTCAGCGTCAGCCCTGTGGTGAGAGTGGCTGTCGAGGCCAAGAACCCTGCTGATCTGCCCAAGCTGGTGGAGGGCCTGAAGCGTCTGGCCAAGTCTGACCCCATGGTGCAGTGTATCATTGAGGAGTCTGGAGAGCACATCATCGCTGGAGCTGGCGAGCTGCATCTGGAGATCtgcctgaaggatctggaggagGACCATGCCTGCATTCCACTGAAGaaATCAGATCCGGTGGTTTCCTACAGGGAGACTGTGTCTGAGGAGTCTGACCAGATGTGCCTATCCAAGTCCCCAAACAAACACAACCGTCTGTACATGAAGGCCCGTCCCTTCCCTGACGGCCTGGCTGAGGACATCGAGAAGGGCGACGTCAGCGCCAGACAAGAGCTGAAGATCCGTGCCCGTTTCCTGGCCGACAAGTACGAGTGGGATGTGTCTGAGGCCCGTAAGATCTGGTGCTTCGGCCCTGATGGTACTGGCCCCAACCTGCTGATGGACGTGACCAAGGGAGTCCAGTACCTGAACGAGATCAAGGACAGCGTGGTGGCCGGCTTCCAATGGGCCGTTAAGGAGGGTGCCCTGTGTGAAGAGAACATGCGTGCTGTCCGCTTTGATGTCCATGACGTGACCCTCCACACAGATGCTATCCACCGTGGTGGTGGTCAGATCATTCCCACAGCCCGCAGAGTGCTGTATGCCTGCCAACTTACAGCCCAGCCAAGACTCATGGAGCCTGTCTACCTGGTGGAGATTCAGTGTCCTGAGCAGGTGGTAGGAGGCATCTACGGTGTGTTGAACCGGAAGCGCGGTCACGTGTTCGAGGAGTCCCAGGTCATGGGGACCCCCATGTTCATCGTCAAGGCTTACCTGCCTGTCAACGAGTCTTTCGGTTTCACAGCTGACCTGCGTTCCAACACTGGTGGCCAAGCCTTCCCCCAGTGTGTGTTTGACCACTGGCAGATCCTCCAGGGAGATCCACAGGACTCTACCACCAAAATCTCTCAGATTGTGGCTGACACCCGTAAACGTAAGGGGCTCAAGGAGGGCATTCCTGCATTGGACAACTACCTGGACAAATTGTAAAAGGCTACCCTCTCATTCCCCTGCCTCATTCCCCCCCTTCCAATACTGAGGAACAGGACTGTACAGATCACCATGAGCACTAACATTTGCCAAAAGAAAAGTCAAGACCTTGTCAAGAATTTATGAATTGTAAACCATATtaaaaatggaaaataaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481875 lncRNA upstream 40327 63256536 ~ 63256756 (+) True G425359
TU481870 lncRNA upstream 45254 63251503 ~ 63251829 (+) True G425354
TU481759 lncRNA upstream 177708 63109800 ~ 63119375 (+) True G425259
TU481761 lncRNA upstream 183231 63110822 ~ 63113852 (+) False G425260
TU481762 lncRNA upstream 183401 63112476 ~ 63113682 (+) True G425260
TU481816 lncRNA downstream 18375 63321778 ~ 63322263 (+) True G425308
TU481905 lncRNA downstream 73276 63376679 ~ 63378116 (+) True G425385
TU481939 lncRNA downstream 86647 63390050 ~ 63392234 (+) False G425415
TU481940 lncRNA downstream 86647 63390050 ~ 63390597 (+) True G425415
TU481956 lncRNA downstream 106410 63409813 ~ 63417222 (+) True G425431
XM_021603770.2 mRNA upstream 404903 62885401 ~ 62892180 (+) True LOC110524278
XM_021603767.2 mRNA upstream 475880 62808921 ~ 62821203 (+) False LOC110524276
XM_021603768.2 mRNA upstream 475880 62810194 ~ 62821203 (+) True LOC110524276
XM_021603764.2 mRNA upstream 494743 62797704 ~ 62802340 (+) False LOC110524275
XM_021603765.2 mRNA upstream 494743 62797963 ~ 62802340 (+) True LOC110524275
XM_021603795.2 mRNA downstream 11133 63314536 ~ 63319938 (+) False LOC110524287
XM_021603793.2 mRNA downstream 11135 63314538 ~ 63319938 (+) False LOC110524287
XM_021603792.2 mRNA downstream 11494 63314897 ~ 63319938 (+) False LOC110524287
XM_021603791.2 mRNA downstream 11495 63314898 ~ 63319938 (+) True LOC110524287
XM_036978039.1 mRNA downstream 19136 63322539 ~ 63376215 (+) False unc13a
TU481721 other upstream 245553 63045090 ~ 63051530 (+) True G425224
TU480579 other upstream 990146 62283152 ~ 62306937 (+) False LOC110524265
TU480458 other upstream 1191211 62105523 ~ 62105872 (+) True G424079
TU480287 other upstream 1575059 61721537 ~ 61722024 (+) True G423922
TU478964 other upstream 2601178 60694257 ~ 60695905 (+) True LOC110524226
TU482675 other downstream 373011 63676414 ~ 63684239 (+) True nfil3-4
TU483050 other downstream 873625 64177028 ~ 64179386 (+) False sac3d1
TU483051 other downstream 873625 64177028 ~ 64179386 (+) False sac3d1
TU483052 other downstream 873625 64177028 ~ 64179386 (+) True sac3d1
TU483060 other downstream 940199 64243602 ~ 64244529 (+) True LOC110522985

Expression Profile