RNA id: XR_005051965.1



Basic Information


Item Value
RNA id XR_005051965.1
length 68
RNA type mRNA
GC content 0.37
exon number 1
gene id LOC118964772
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63300445 ~ 63300512 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATAAGTGATGACATAAACATTCTTCACTTTGACCTGATTGTCCAGTGATGATAAGCTTCAGTCTGACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU481875 lncRNA upstream 43689 63256536 ~ 63256756 (+) True G425359
TU481870 lncRNA upstream 48616 63251503 ~ 63251829 (+) True G425354
TU481759 lncRNA upstream 181070 63109800 ~ 63119375 (+) True G425259
TU481816 lncRNA downstream 21266 63321778 ~ 63322263 (+) True G425308
TU481905 lncRNA downstream 76167 63376679 ~ 63378116 (+) True G425385
TU481939 lncRNA downstream 89538 63390050 ~ 63392234 (+) False G425415
TU481940 lncRNA downstream 89538 63390050 ~ 63390597 (+) True G425415
TU481956 lncRNA downstream 109301 63409813 ~ 63417222 (+) True G425431
XM_021603770.2 mRNA upstream 408265 62885401 ~ 62892180 (+) True LOC110524278
XM_021603767.2 mRNA upstream 479242 62808921 ~ 62821203 (+) False LOC110524276
XM_021603768.2 mRNA upstream 479242 62810194 ~ 62821203 (+) True LOC110524276
XM_021603764.2 mRNA upstream 498105 62797704 ~ 62802340 (+) False LOC110524275
XM_021603795.2 mRNA downstream 14024 63314536 ~ 63319938 (+) False LOC110524287
XM_021603793.2 mRNA downstream 14026 63314538 ~ 63319938 (+) False LOC110524287
XM_021603792.2 mRNA downstream 14385 63314897 ~ 63319938 (+) False LOC110524287
XM_021603791.2 mRNA downstream 14386 63314898 ~ 63319938 (+) True LOC110524287
XM_036978039.1 mRNA downstream 22027 63322539 ~ 63376215 (+) False unc13a
TU481721 other upstream 248915 63045090 ~ 63051530 (+) True G425224
TU480579 other upstream 993508 62283152 ~ 62306937 (+) False LOC110524265
TU480458 other upstream 1194573 62105523 ~ 62105872 (+) True G424079
TU480287 other upstream 1578421 61721537 ~ 61722024 (+) True G423922
TU478964 other upstream 2604540 60694257 ~ 60695905 (+) True LOC110524226
TU482675 other downstream 375902 63676414 ~ 63684239 (+) True nfil3-4
TU483050 other downstream 876516 64177028 ~ 64179386 (+) False sac3d1
TU483051 other downstream 876516 64177028 ~ 64179386 (+) False sac3d1
TU483052 other downstream 876516 64177028 ~ 64179386 (+) True sac3d1
TU483060 other downstream 943090 64243602 ~ 64244529 (+) True LOC110522985

Expression Profile