RNA id: XM_021603791.2


Basic Information

Item Value
RNA id XM_021603791.2
length 1437
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110524287
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63314536 ~ 63319938 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAGTAATACAATATTAGCTAAGCTAGTTAGAGAATGACATTAAAATGTAGCTATATTACAATTAGTATTATTGTCAGATAAATGTTCCTTTTGGCATATTTAATCACATCTCTGACGCATTTTACGTCATGTTCAGATATCATGGGAGGTGTGAAGCAGGAGCAGAATGATGGACCACCACCAAGAGGCATGCCGTCCTCTGATGCAGCACACGAAGAGCATATCCGTTCTCTTTCTGTACAGCCTGTGAAGAAGAGGGGTTGGCCAAAGGGTAAGAAGAGAAAGAAGGTTTTGCCCAACGGTCCCAAGGCACCAGTGACTGGATATGTGCGCTTTCTGAATGAACGACGAGAGCAGATCCGTGCCAAGTACCCTGACCTGCCCTTTCCAGAAATTACCAAGAGGTTGGGCGCAGAGTGGAGCTGCTTAGCACCTAATGACAAGCAGCGCTTCCTGGATGAGGCGGAGCGAGAAAAGCTGCAGTATGCCCGGGAGCTGAGAGAATACCAACAGAGTGAGGCCTATCAGATCACCAGTGCCAAGATCCAGGACAAGAAGGTCAAGAGAGAGGAGTCTCCATCTGTCATTATCAATGCCAACAGTTCTGGATCGGCTGCTCTGAAGGGTTCAGACTACCTGTCCAACAGATTTGATGTTCCAATATTTACAGAGGAGTTCCTGGACCAGAACAAGGCCCGGGAAGCAGAGCTGCGGCGTCTACGCAAAGCCAACGTTGAGTTTGAGGAGCAGAACGCCGTGCTGCAGAAGCACATAGCAGACATGTACAGCGCCAAAGAGAGGCTGGAAGCTGAACTGGGGCAGGATGAGCTCCGGACGCAGGCCTTACACAGGCACCTGCTGGCCATCAAACACACCCTCGTCAGCAGTCTGTCCACCGTGGCCCTGCCAGGCACAGGTGAGACTCCCTCTCTTGGTACCCTGGACTCTTACCTGAGTCGCCTGAGTGGTACTCTGGAGAGCAACCCTCATGAGCACCGTGCCTTGCTGACTCAGCTTCGCGATgtcctttctcacctggacagTGAGAAGCTATGATGGGACCTCCACACCCATTCTGACTTGATGTGGATCCTGGATGGTATAACAACAGGTCATATCGGTGCCCTTCAGTGTAGTCATGGGATAGATAGGATGTCTTTCTGATGTAACAGACAAATTACAAACTGATAAAACACAAGGCTCAGTCTATATAGCATTACTCTGTGGTATACAGAGTAATAtataaattgattaaataaagaaAATTCCTCAGCAATCCCCACACCCCCTAATTGCAAGGTGAGTTcctagaattttttgcaaatgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagataccttatttacatatgtattcagaccctttgctatgagacttgaaattgagctccgttttttcctgtttcaattga

Function

GO: NA

KEGG:

id description
K24650 HMG20B; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481875 lncRNA upstream 58142 63256536 ~ 63256756 (+) True G425359
TU481870 lncRNA upstream 63069 63251503 ~ 63251829 (+) True G425354
TU481759 lncRNA upstream 195523 63109800 ~ 63119375 (+) True G425259
TU481816 lncRNA downstream 1840 63321778 ~ 63322263 (+) True G425308
TU481905 lncRNA downstream 56741 63376679 ~ 63378116 (+) True G425385
TU481939 lncRNA downstream 70112 63390050 ~ 63392234 (+) False G425415
TU481940 lncRNA downstream 70112 63390050 ~ 63390597 (+) True G425415
TU481956 lncRNA downstream 89875 63409813 ~ 63417222 (+) True G425431
XM_021603788.2 mRNA upstream 11495 63297083 ~ 63303403 (+) False LOC110524284
XM_021603789.2 mRNA upstream 11654 63298730 ~ 63303244 (+) True LOC110524284
XR_005051965.1 mRNA upstream 14386 63300445 ~ 63300512 (+) True LOC118964772
XM_021603770.2 mRNA upstream 422718 62885401 ~ 62892180 (+) True LOC110524278
XM_021603767.2 mRNA upstream 493695 62808921 ~ 62821203 (+) False LOC110524276
XM_036978039.1 mRNA downstream 2601 63322539 ~ 63376215 (+) False unc13a
XM_036978040.1 mRNA downstream 2601 63322539 ~ 63376215 (+) False unc13a
XM_036978041.1 mRNA downstream 2601 63322539 ~ 63376215 (+) False unc13a
XM_036978042.1 mRNA downstream 2601 63322539 ~ 63376215 (+) False unc13a
XM_036978043.1 mRNA downstream 2601 63322539 ~ 63376215 (+) False unc13a
TU481721 other upstream 263368 63045090 ~ 63051530 (+) True G425224
TU480579 other upstream 1007961 62283152 ~ 62306937 (+) False LOC110524265
TU480458 other upstream 1209026 62105523 ~ 62105872 (+) True G424079
TU480287 other upstream 1592874 61721537 ~ 61722024 (+) True G423922
TU478964 other upstream 2618993 60694257 ~ 60695905 (+) True LOC110524226
TU482675 other downstream 356476 63676414 ~ 63684239 (+) True nfil3-4
TU483050 other downstream 857090 64177028 ~ 64179386 (+) False sac3d1
TU483051 other downstream 857090 64177028 ~ 64179386 (+) False sac3d1
TU483052 other downstream 857090 64177028 ~ 64179386 (+) True sac3d1
TU483060 other downstream 923664 64243602 ~ 64244529 (+) True LOC110522985

Expression Profile