RNA id: XM_036978041.1


Basic Information

Item Value
RNA id XM_036978041.1
length 6799
RNA type mRNA
GC content 0.53
exon number 44
gene id unc13a
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63322539 ~ 63376215 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTCCTTACAGTGGTGGTGCTGAACAAGATGGCTGTGCGTCGGGGAGCGGAGAGCTGAGGTTGAAATATAACCCCCTAAATTGATCCATACACGAAAGGGAAAGCGCACGACGAAAGACTCGAAAGATCAGATTTTTTTTACTGTCGCAAAACAGTGACGTATAATAGTTTCTAGTAGAAACGGAGCTGACTCCATCCACCTATTTATACAGGCTATAGAGACGGACATTACTCCGAATTGAAATATCGGTGCCGGTGGAAGACATCTGGGAGCGATCATAGCCAGAGCTAAGAGATGTCATTGCTGTGCGTTGGCGTGAAGAAAGCCAAACTCGATGGACCCCAAGAGAAATTTAACACCTACGTAACGCTGAAGGTGCAGAATGTCAAGAGCACCACCATTGCTGTGCGGGGCGCCCAGCCATGCTGGGAGCAGGACTTCATGTTTGAGATCAACAGGCTGGACCTGGGGCTGACGGTGGAGGTGTGGAACAAAGGGTTAATCTGGGACACCATGGTGGGGACCTTGTGGATCCCCCTGCAAAACATCCGCCAGTCTAATGAGGACGGGCCGGGGCAGTGGCTGACCCTGGACTCCCAGGTCATCATGGCTGAGAATGAGATCACCGGCACCAAAGACCCCACCTTCCACCGCGTGCTGCTGGACACCCGCTTTGAACTGCCAttagACATTCCAGAGGATGAGGCTCGATACTGGGCCAAGAAACTGGAGCAACTCAATGCCATGAGGGACCAGGACtacacataccaggaggaggaggagagaccacTGCAAGCGCCATCAACACAGTGCTGTAACTGGAGTCTTTGGGGAGACCAGCAAAACGAAGACCCAGACAGTGCGGTGGACGACAGAGACAGCGACTACCGCAGTGAGACCAGTAACAGCATCCCCCCTCCCTTCTACACCACGTCTCAGCCCAACGCCTCCATGCACCAGTACCCCATCCAGAGAGACCAGCGCTACTCCTCGCACACCTCCTACAACGGCTCCATCCAAGAGCTGGACTACGACAACCAGAGACCCATGAGACGCTATGATAGTTTAGACTCGGCCACCAACGGGCGCAGCGATCTCGATTCAGCCTCAGGTTCGAGCCGGCACACCAGCCGCCAGTACTCTCTAGACAGTAGGCACTCGCTCTCCGATAGtccTACAGGCAGCAGTCGCTATGCCTCCTCTGGGGAGCTGAGCCGAGGCAGCTCCCAGCTCAGTGAGGAGTTTGGCCCTGAGAACGAGGGGAGTCTGAGAGGCTCTGTGGAGCTCTACGATGAGAACGACTCTTACCACTCCTGCCACTCCTCTGTCAGCTACGACAAGGAATCGGCTGGCTGGGACCCCGATGAGCCCGAGGTGGTGTACAGTGACGAAGGGGGCTATGTcaaagatggaggagaggagggggctaTTTACGATGAGGAGGGCGAGCTCTACCAGCCcgagcagggagagggggagtacaactatgagggagaggaggagatcatTTACGAAGATGAAGATCTCTACCCTCTGGACGGCACGCTCAGCGAGGACCAGGAGCCACcctacacccccacccccaccagcaCAGCCCCCACGCTGGCCCCCGAGGCCTCCATCACCAGGCCCCCTCTGGAGAAACAAGCCTCTCTGAGAGAGCAGCAGCCCGAGCCCCCCACCCTGGCCCCCACCACCCAGGCCCAGACCATGCCCCCTGTCCAGCCCCCTGTCACCACAGCCTCCACCAAGCCTCCATTTACTCCCATGATCCATCCATCCCTCACCCAGCCCCCGGTGCCCACTGCCCAGCCCCCGGTGCCCACCACCCAGCCCCCTGCTCCAGAGACCCAGCCTCCAGTGTCTGATGCCCTGGATGATATCCTCCTAGACCTTCAAGAGGAAGAGCCTCTGTCTTTAGAGCAGGAGGTCCCTGTGGTGGAGAGTCCCCCAGCAGAAGTCCCAGCAGAGAAGAGTGAGACTCCTCTTGTCAGCTATCAAAGGCCCATCATGGAGCCTGGACCAGACCGGGCCAGGGCCAACTGGCAACGGCTCTGCAGCAAGGTCCGACTACAGCTACAGCagGCTCGAGGGGAGTCGGTTGGGATTTGCTCTCTGTTGCTATCAGCAGGGGTGGGTGGGGCGTTGTATAGCATCGACAGCATGCCGGACCTCCGCAAGAGGAAAGCCATGCCTCTGGTCAGGGACCTGGTCAGTGCTATGTCCCTGGCTCAGAACTCCAGGAAGGCAGGGATTACATCAGCCATGGCGTCCAGCACTCTCAATAACGAGGAACTGAAGAGCCATGTGTACAAGAAGACTCTACAGGCTCTGATCTACCCCATCTCCTGCACCACGCCCCATAACTTTGAGGTGTGGACGGCCACCACGCCCACCTACTGCTATGAGTGTGAGGGGCTGCTGTGGGGTATCGCCCGCCAGGGCATGAGATGCACCGAGTGTGGGGTCAAATGTCACGATAAGTGCCAGGACCTGCTCAACGCTGACTGCCTGCAAAGGGCAGCGGAGAAGAGTTCTAAGCATGGGGCGGAGGACCGAACCCAGAACATCATCATGGTACTGAAGGACAGGATGAAGATCCGGGAGAGGAACAAGCCGGAGATCTTTGAGCTGATCCAGGAGGTGTTTGCCATGGTCAAAGCCACTCACGTCACCTACATGAAGCAGATCAAACAGAGTGTACTGGACGGCACCTCCAAGTGGTCGGCCAAGATCAGCatcacagTGCTGTGTGCTCAGGGCCTTCAGGCCAAGGATAAAACTGGCACGAGTGACCCTTATGTCACGGTCCAGGTGGGCAAGACCAAGAAGAGGACCAAGACTATCTACGGCAACCTCAACCCTGTCTGGGAGGAGAACTTCCACTTtGAGTGCCACAACTCCTCGGACCGGATCAAGGTGCGGGTGTGGGACGAGGATGATGACATCAAGTCTCGGGTGAAACAGAAGTTCAAGAGGGAGTCAGATGACTTCCTGGGTCAGACCATCATTGAGGTCCGCACGCTGAGCGGAGAGATGGACGTCTGGTACAACCTGGACAAGCGTACAGACAAGTCAGCTGTGTCTGGTGCCATCAGGATGCACATCAATGTAGAGATCAAAGGAGAGGAAACAGTCGCTCCATATCATGTCCAATACACCTGTCTGCACGAGaacCTCTTCCACTTTGTCACAGATGTGCAGAGCTCTGGCGTTGTGAAGATTCCTGACGCTAAAGGGGATGATGCGTGGAAGGTGTACTTTGATGAGACTCCTCAGGAGATAGTGGATGAGTTTGCCATGCGCTACGGAGTGGAATCCATCTACCAGGCTATGACTCACTTTGCCTGCCTGTCGTCTAAGTACATGTGCCCGGGGGTTCCCGCGGTAATGAGTACCCTGCTGGCCAACATCAATGCCTACTACGCCCACACCACCCAGGCCACCAACAACGTGTCGGCCTCCGACCGCTTCGCCGCATCCAACTTCGGGaaagaaCGATTTGTGAAGCTCCTGGACCAACTCCACAACTCTCTGAGGATTGATCTGTCCATGTACCGGAATAACTTCCCAGCCAGCAGTTCTGAGAGGCTGCAGGACCTCAAGTCTACTGTGGACCTGCTCACCAGCATCACCTTCTTCAGGATGAAGGTCCAGGAGCTACAGAGTCCCCCCAGAGCCAGTCAGGTGGTGAAGGACTGTGTCAAGGCCTGTCTCAACTCCACCTATGAATACATCTTCAATAACTGTCACGAGCTCTACAGCCGGGAGTACCAGACAGATCCGGCCAAGCCAGGAGTGGATCACCCAGAAGAGCAGGGTCCCAGCATCAAGAACCTGGACTTCTGGTCCAAACTCATCACCCTCATCGTGTCCATCATAGAAGAGGACAAGAACTCctacacaccctgcctcaaccaGTTTCCTCAGGAGCTCAACGTGGGTAAAATCAGTGCCGAGGTGATGTGGAACCTGTTTGCTCAGGATATGAAGTATGCCATGGAGGagcatgAAAAGAACCGGCTGTGTAAGAGTGCGGATTACATGAACCTGCATTTTAAAGTCAAGTGGCTTTACAACGAGTACTGCAAAGACCTGCCCTTCTTCAAGAGTCGTGTGCCCGAGTACCCGGCGTGGTTTGAGCCGTTTGTCATCCAGTGGTTGGACGAGAATGAGGAAGTGTCTCGAGACTTCCTGCACGGTGCGCTGGAGAGGGACAAAAAAGACGGGtTCCAGGTAACGTCGGAACATGCTCTGTTCTCCTGCTCTGTGGTGGACGTCTTCTCTCAGCTCAACCAGAGCTTCGAGATCATCCGCAAGCTGGAGTGTCCCGACCCCCAGATCGTAGGCAACTATATGAAACGATTTGCTAAGaccATCGGTAACGTTCTCCTGTCCTACGCTGACATCATCTCCAAGTGCTTTGCTAACTACGTCAACATGGAGAAAGTGCCATGCATCCTGATCAACAACATCCAGCAGCTCAGAGTTCAACTGGAGAGGATGTTTGAGGCCATGGGAGGAAAGGACCTGTGCAAAGAGGCCAGTGACTTCCTGAAAGACCTGCAGGTGAAGCTGAATACTGTGATGGATGATCTCAGCAGGATCTTTTCTGTCAGttTCCAGCCGCAGATTGAGGACAACGTGAAACAGATGGGAGACATCCTTGGCCAGGTGAAGGGGACCAACGTGGGGGCTAACAACTGCAGTAGCGTGGCCCAGGACGCTGACAATGTGCTGCAGCCCATCATGGACTTCCTGGACAGCAAccTGACGCTGTTTGCTAAGATCTGTGAGAAGACGGTGCTGAAACGTGTTCTGAAGGAGCTGTGGAAACTGGTGATGAACACCATGGAGAAGACTATCGTCCTACCCCCTCTCACCGACCAGACGATGATTGGCACTCAGCTCATCTCCAACGCTGCCAAACAGCTGGGACAGCTCTCCAAGATAAAGgaGCACATGGGTCGTGAGGAGGCCAAGGCACTGTCCCCTAAGCAGTGTGCTGTGATAGAACTGGCTCTGGACACCATCAAGCAATACTTCCATGCTGGAGGGGTGGGTCTGAAAAAGACCTTCCTGGAGAAGAGTCCTGACCTGTTGTCTCTACACTACGCCCTGTCCCTCTACACCCAGGCCACAGACAAACTCATCAAGACCTTTGTTTCATCTCAGAACGCACAAGTTTTCGGCGGGAAGGGGGTGAGGTTCACGGCTAGTGAGGATGTGTACCCAGAGAAGGGCTCTGGAGTGGACGACGCCGTGGGAGAGGTGTCTATCCACGTGGAGATCTTCACCCACCCCAACACTGGAGAGCACAAGGTCACCGTTAAAGtggtgGCAGCCAATGACCTGAGGTGGCAGACCACGGGGGTGTTCCGTCCCTTCGTGGAGATCTACATCATCGGTCCTCACCTGGCTGACAAGAAGAGGAAGTACGCCACCAAGTCCAAGAACAACAGCTACGCCCCCAAATACAACGAAACGTTCACATACACCCTCAGTAACGAGGTGGGCACAGAGTGTTAcgagctgcaggtgtgtgtgaaggactACTGCTTCGCCCGGGAGGACCGTACGGTGGGCATGGCCGTGATGCAGTTGAAGGACATGTCCTCTAGGGGCAGCGTGGCGTGCTGGCTCCCCCTGGGGAAGAGGGTCCACATGGACGAGACGGGCCTCACCGTCCTCCGCATCCTGTCCCAGCGCAACAACGACGACGTGGCAAAGGAGTTCGTCAAGCTCAAGTCAGACCAGCGTTCTCCCGAGGAAGGCCGAGGCTGAGTGGGCAAAGTCTTTATTCGATCAGCACCACCTACAGGCTAGGAGGTCCTTCTGCAGACTGACTGCAAGCCAAACCACTGCCCTGATGTTGTAGTGTTGGACAAGCACAGAGAAACAGTTATTTACTACAATACTGTACATACATCTCATTGAAGAAGACGTGATACCATCTACAGGCATAGCCCTGATTGTCTTGAAAGCACCGATGTCTTTATTATGAATATGATTAATTATCTTGTAAAAATGCATAGATATAATCGTAAACACAGCAAACCCCACAACACTGACCAACATTCTacaacacatccacacacacacagagagtttaagtcatagagtatatagagtacccttgttctctccctctctctatttcccatAGCATAGGCCATGTCTTAGTGCTCTCCAATCACACATTTGAACTAGAATCTGCCAATCTCGACTAGTTTCATGCAGCGGTATCTAAAAGCTCCGGGAGATGAAGTTCTTGTAGCCTTGAAAGTCTTGACGTATCTTCTATTACATTAAATCCACGATCCCTTCCTTTGTCTAGACTAGACTAATGCCAATGGATCAATCCATGATGTTATGCCAAGTCAAGCCCTAAGCACAAGTCAACAGGACCAACTGTGAACAGCAGACCATCAGGCTTTTAGGCCTCACACATTCCAAAGAGTCAGGTTTACACACACTGGTTTATGATACTATTTCCATGGGATGTCCACCATAGGCTGAATTCTGGATCTTCTCTCATTCCGACATGGAGTATCTATAGCAGAGCAGGCTGGACAAATTATAAATGTAAATGTTTCTAAGTATTAATTTGAGATATTATCAGTGAATTTATGGTATATTTAAAGACTATATGAAGACGTTGCACTTGGAAgagagtctctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481816 lncRNA upstream 276 63321778 ~ 63322263 (+) True G425308
TU481875 lncRNA upstream 65783 63256536 ~ 63256756 (+) True G425359
TU481870 lncRNA upstream 70710 63251503 ~ 63251829 (+) True G425354
TU481761 lncRNA upstream 208687 63110822 ~ 63113852 (+) False G425260
TU481905 lncRNA downstream 464 63376679 ~ 63378116 (+) True G425385
TU481939 lncRNA downstream 13835 63390050 ~ 63392234 (+) False G425415
TU481940 lncRNA downstream 13835 63390050 ~ 63390597 (+) True G425415
TU481956 lncRNA downstream 33598 63409813 ~ 63417222 (+) True G425431
TU481907 lncRNA downstream 54602 63430817 ~ 63431584 (+) True G425387
XM_021603795.2 mRNA upstream 2601 63314536 ~ 63319938 (+) False LOC110524287
XM_021603793.2 mRNA upstream 2601 63314538 ~ 63319938 (+) False LOC110524287
XM_021603792.2 mRNA upstream 2601 63314897 ~ 63319938 (+) False LOC110524287
XM_021603791.2 mRNA upstream 2601 63314898 ~ 63319938 (+) True LOC110524287
XR_005051965.1 mRNA upstream 22027 63300445 ~ 63300512 (+) True LOC118964772
XM_021601329.2 mRNA downstream 178423 63554638 ~ 63557123 (+) True foxq2
XM_021603820.2 mRNA downstream 237682 63613897 ~ 63637179 (+) True onecut3a
XM_021601330.2 mRNA downstream 293986 63670201 ~ 63672004 (+) True si:dkey-172o19.2
XM_021603821.2 mRNA downstream 300194 63676409 ~ 63684848 (+) False nfil3-4
XM_021603827.2 mRNA downstream 412909 63789124 ~ 63798667 (+) False peak3
TU481721 other upstream 271009 63045090 ~ 63051530 (+) True G425224
TU480579 other upstream 1015602 62283152 ~ 62306937 (+) False LOC110524265
TU480458 other upstream 1216667 62105523 ~ 62105872 (+) True G424079
TU480287 other upstream 1600515 61721537 ~ 61722024 (+) True G423922
TU478964 other upstream 2626634 60694257 ~ 60695905 (+) True LOC110524226
TU482675 other downstream 300199 63676414 ~ 63684239 (+) True nfil3-4
TU483050 other downstream 800813 64177028 ~ 64179386 (+) False sac3d1
TU483051 other downstream 800813 64177028 ~ 64179386 (+) False sac3d1
TU483052 other downstream 800813 64177028 ~ 64179386 (+) True sac3d1
TU483060 other downstream 867387 64243602 ~ 64244529 (+) True LOC110522985

Expression Profile