RNA id: XM_036978051.1


Basic Information

Item Value
RNA id XM_036978051.1
length 2643
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110524293
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63402446 ~ 63409451 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTACATGTCACATTCCAGTTACTATCATAAAGGATACATTGTCTTGTGTTTCTTGTTGGATACATTGACTATTTGAAACACACAGGGCAACTTTGTTTCAAAACCCCATTGATATCCATTATTAACAATCAGGTTTAATCTGGGGGCGATTCTGTTTTTGCGCGGATGTCTTTCATTTCTCTCGTTGAAGGGGGAGGGGAGtgaaaggaggggagaagggattTAACACAGACCGAAAGGGAGAAACCTAGATATTATGCGAGATGGACAAAAACGAtccaACCGGGAAGAAGTTTCGGAGCAAGCCTCAGCTGGCTCGTTACCTTGGCAACCAGATGGACCTCAGCTCCTTCGACTTCCGCACAGGGAAGATGCTCATGAGTAAACTGAACAAGAACAGGCAGAGACTGCGCTATGACAACAACAATCAGACCAAGGGCAAGCCAGACCTGAACACATCACTCCCCGTCAGACAGACTGCTTCCATCTTTAAGCAACCTGTCACCAAGGTTACCAACCACCCCAGCAACAAAGTCAAGACAGATCCACAGAAAGCCGTCGACCAGCCGAGACAGCTTTTCTGGGAGAAGAAGCTTGGTGGTCTCGATGCCTTTGACATCGCAGAGGAGCTAGTGAAGACAATGGACCTGCCTAAAGGTCTTCAAGGAGTTGGACCTGGATGTACAGACAAGACTTTACTGTCAGCGATAGCCAGCGCCCTGCACACTAGTGCAGCCCCCATCACCGGTCAGCTGTCTGCAGCCGTGGAGAAGAACCCAGGGGTGTGGCTCAACACATCGCAGCCCCTGTGCAAGGCCTTCATTGTCACTGACGAGGACATCAGGAAGCAGGAGGAGCTGGTGTACAGTGTGAGGAAGAAGCTGGAGGAGGCTCTAATGGCGGACATGTTGGCTCATGTGGAGGAAGCAGCCAGCGAGGGCGACTCACTCGAGGAAGACAATGACGACATGGAGACTGTATAGCAGAGGGTGATGGGGAGTTAGAGTAGTTTGGATGGGTCTTTCAACACCGTATCACAGGACCATGACACCTGTACCAATCCAACCAAAAGAATTGCCCATTTTCCACCTACTACCCCTCTGAAGCTTTACCTACCCACTGCCCACCTCGCCCGCTGGTTGGGCTCTTCTGGCTCCAGTGCTAAGAAAGGACTTGGACCAAGCCATTCTGAATCAGATAATTGAGCTAATAATCTTTCATTTGAAAAAGAGATCATCCAATAACTTTTTGACAGTGCAGAGTGAGAGGAGAGCGatttacatacagtatgacaAGTATTTACAAGACATTGTATGGATTTTCTGAATGTGAGATGTATGTTGTGACAATCAtatcacccccccacacacacacacacacacaaaacaaaacaaacaaaaaactactttttaaatgtatttggagaTTTTCAATTAGTAGCGAATGCTGTTTTTCTTTCTGGGTTTCTAATGCACTCCATCGGGCTCGATGGACCATAGTGTAGGGGTACTTTGGTTCAGTTTACAGGGCTATGGGAGAGAAACTTTGATGAGAGGGAACAATATATTTGCCCAAATGATGCACTCTAAAGCATGAGTTATAGTCACAGGACAGAGAATTAGTGAAAAATGATTGAATGGTGTTCTCAAGGAAGTATTCTTGTCATTGTAATGTAGTCCATTCAAACCCCTTACCAAGTATTGACCAAAGATGGTTCCTGTGATTTTTTTTGGAAAGTCTTGCAGTATTCTACTGTAGTTATTTTGTTATAGCATCATATCCAGCTTTTCAATAGCTAGTGGTGTTTCCACATGACACCGAGTTATGAGTGAAGTCATACTGTACATGGTTAAAATGGGTAGTAGAAGTGACTTGGACCCTTCTCTCCTGCATTGTGTAGATTTTATTCATTTTAACACTCATTGCTCACTGAAGTTGTTGGTTTAACGTTGCTGTTTCTAGCCAATGCATGTTTGTCCCCATGGCcatgctttttaaaatgtttccAGTTATGGGTCAAAGCCATCACAACACTTGCTGCCTCCATTATCTTGTGCACTGGGTGCCAGACAGAGTAAACTAAGCCGATTTTGTTTGACTAAAGATTAAGGGCTGGACTCAATCTGTATCGTGGAAGATCGGTGTTAAATTTAAAGGCCATTTTTTGACATTCCgttgacatatgcagcgtttgaTGTGGATGCAGTCTTTGAAATGCctttttggggtggcaggtagcctagtggttagagcgttgggccagtaacagaaaggttgctggatcgaaaccccgagctgacatggtaaaaatctgtcgttctgcccctggagGGGGCCCACCTACCCCCAGTCggccttcattgtaaattaagagtttgttattaactgacttgcctagttaaataaagattcgaTTTGTTTAAAATTTGTAAGAAAAAAAAATTGAGTTATAGTGTGGATTTCCACGATGTAGATTAAATCCAGCCCAAAGATTCTGTGTTGAGAAAAATAATTGCGCTTTGTACATATACCCACATTTCTCAAAGTTTGTATGTTTCAATTGTCAAGCTCAATGAGATCCCTATCCAACATCAGCAGGCTGAACTGAATTTTTTGTTACTGAGTAAAATGTATCAACAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU482478 lncRNA downstream 68871 63333058 ~ 63333575 (-) True G425892
TU482471 lncRNA downstream 79434 63322563 ~ 63323012 (-) True G425886
TU482472 lncRNA downstream 79594 63322471 ~ 63322852 (-) False G425886
TU482470 lncRNA downstream 79594 63322563 ~ 63322852 (-) False G425886
TU482396 lncRNA downstream 111669 63290446 ~ 63290777 (-) True G425820
TU482386 lncRNA upstream 347 63409798 ~ 63417187 (-) False G425811
TU482385 lncRNA upstream 469 63409920 ~ 63417187 (-) True G425811
TU482553 lncRNA upstream 101737 63511188 ~ 63511413 (-) True G425962
TU482554 lncRNA upstream 103449 63512900 ~ 63513962 (-) True G425963
TU482555 lncRNA upstream 106797 63516248 ~ 63516504 (-) True G425964
XM_036978049.1 mRNA downstream 197 63380799 ~ 63402249 (-) True si:dkey-110c1.10
XM_036978050.1 mRNA downstream 3128 63380799 ~ 63399318 (-) False si:dkey-110c1.10
XM_021603790.2 mRNA downstream 88155 63303764 ~ 63314291 (-) True btbd2a
XM_021603787.2 mRNA downstream 119798 63274631 ~ 63282648 (-) True LOC110524283
XM_021603786.2 mRNA downstream 141965 63257597 ~ 63260481 (-) False LOC110524282
XM_021603803.2 mRNA upstream 8513 63417964 ~ 63443424 (-) False LOC110524290
XM_021603805.2 mRNA upstream 8513 63417964 ~ 63443425 (-) False LOC110524290
XM_021603806.2 mRNA upstream 8513 63417964 ~ 63443425 (-) False LOC110524290
XM_021603809.2 mRNA upstream 8513 63417964 ~ 63443425 (-) False LOC110524290
XM_021603798.2 mRNA upstream 8513 63417964 ~ 63443426 (-) False LOC110524290
TU482381 other downstream 99052 63300924 ~ 63303394 (-) True G425810
TU482441 other downstream 141977 63259648 ~ 63260469 (-) True LOC110524282
TU482212 other downstream 501943 62894659 ~ 62900503 (-) True G425647
TU482168 other downstream 552199 62850004 ~ 62850247 (-) True G425612
TU482117 other downstream 594324 62803938 ~ 62808122 (-) True LOC110524277
TU483573 other upstream 874517 64283968 ~ 64286359 (-) True LOC110522986
TU484037 other upstream 1157230 64566681 ~ 64568380 (-) True G427287
TU484034 other upstream 1292423 64701874 ~ 64706025 (-) False LOC110524330
TU484039 other upstream 1316476 64725927 ~ 64732972 (-) True LOC110524330
TU484689 other upstream 1495594 64905045 ~ 64910998 (-) True LOC110524332

Expression Profile