RNA id: XM_021603813.2


Basic Information

Item Value
RNA id XM_021603813.2
length 8671
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110524292
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63462504 ~ 63491605 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCCCATGCTGTCAGAACATGCCTAGCCTAGTTCTCCCCACAGTGCCAAGCCATGTCACACAGTGGGGTGCATCAGCTTCCAGTCAGACCGAAGAGACACCTTTCATGGCTAGCGGTTTCATCACATTACACAAGacaggcagacggacagacggCAGGACGGACACGCGGGCGGCGGCTGTGATTGGCGGCTCGGCGGCAGGCTGGTGGAAGATGTCGTCGGGAGCCGGTGGGAGGGGTGGGCGGCGGCTCAGGGGTGGGGGGGGAGGGGAAGCGGCAGAGGAAGGCCCAGTGGGCATCCCCTTCCCCGAGCACAGCGCAGACATCCTGGGCAGTCTGAACAAGCAGCGCCTCAGCGGCCTTCTGTGCGACGTGCTCCTGATCACCCAGGAGAGGGAATTCACTGCCCACCGTTCGGTCCTGGCCTCCTGCAGCTCCTACTTCCACAAGTTGTTCACCTCGGGCCCGACCGCCAGCCAGCAGAACGTCTACACCATAGACTTTGTGGCGGCCGAGGCCCTAGGCGCCCTGCTGGACTTTGCCTATACAGCCACGCTAACGATCAGTCACAGCTCCGTGGGAGACATCCTGGCTGCCGCCCGCCTGCTGGAGATCCCGCCCGTCCAGGAAGTCTGCACTCACCTGCTGGACACCAAAGTGCTCTCCCCGCCGGCGGGCAGTGagcgaggagaggaggatgatgatgatgatgagggggATGGTgggaagggtggaggaggatggGGGCAGCAGGGGAATCGACTGCGTGCCCGGGAGTATCTAGAATACTTCCAGAGAGGGGCCCACTGGAGCAGCAGCTGCAGCACGCCAGAGCTCAGGGACATGCCCACACACCTGCACTTTAACCATGGCAATGGGTCCCACAGCAACGGGGTCCCCGGGGGCCCCAGCGAGTTCTGCTCTCCCCTGGACCTTGCCCAGGCCCCCACACAGGACccagatgatgatgaggaggacgACGAGGAGGACGAAGTAAAGGTGGAGCACTCTGAGAACCGCAGGGACATGCTGACCTGGGCCAGGGGGAATGGAGGGGGGCCAGGGGCCTCTTTCTACGCCCCTGCCCAGAACGGCCATTTCTTCCTCCCCACGAAGCCCAAACTGGAgccggaggaggaagaggaggaagatggcatgcgggatggggagagAGGCTCGGCCAGCGCACTCCTGCAGCAGATGATGGACTCCATCGAGAGGCAGAAGGAGCGGGCCGCGGCCGGTGAGgagctgggggagggggaggaccCGGATGTGGAGTTTTACTTGAATTACTTTAACAGCACACAGCATGAAGACGCCGCCGTCTCACAGGGACTGCTGCCCCTCTGGGCGACACGGGGAGGCTCCAGCcaagatagagggggaggagagaggggaggaagaggaggaggaggaggagaagagagaggagggggtggaggggagaggaagatgCGCTCCAAGGCCTTCCAGAAGTGCCCAATCTGCTCCAAAGTCATCCAGGGTGCAGGCAAGCTACCCCGCCACATCCGCAcgcacacgggagagaagccctACGAGTGCGCCATCTGCAAAGTGCGCTTCACCAGGCAGGACAAGCTCAAGGTTCACATGCGTAAGCAtacgggagagaagccttacctgTGTACGCAGTGTGGTGCTGCGTTCGCCCACAACTACGACCTGAAGAACCACATGCGCGTGCACACAGGCCTGCGGCCCTACCAGTGCTCCAGCTGCTTTAAGACTTTTGTGCGTTCAGACCACCTGCACCGCCACCTCAAGAAGGACGGCTGCAACGGTATCCCCTCCCGCCGGGGCCGCAAGCCTCGGGTACGGGACCCCGGGCTCCTGGAGGCCTCCATGGGGCTGGTGGGCCCCGGCCCTCGCAGTGGCAGGGAGAGACGGCGCATGGAGGCAGCCTCGGCAGAGGGGGCCTCCAGAGTCCATGCACACAGTCCCCAGCCCCAGGAGAGGCCAGAGGAGCCGGGGCActgaggcagggagacagggagggacgCTGGACGCCATAGTCATACTTGGCCCCTGGAGGGGCCGCTGCCGAAAcaagaggagaaaaaaaacacgCTAAGgcaaaaatacaaaaaacacaACTAACTATTTCTCTATAAACCAAATCAGGGTGTCACAAATCTAATAttttcagtttattttatttctttGCTTTAGGAAACAGTAGACACAACAGACAAACATGAGTCAGTGTTCTGTTAAATAGCAAGGAACGCTTCAAATCACACACCCATGATGTCTCCTTTCTGGGTCATTCCTGTCTGATctaggtttttatacatttggcAAAAATGCTTTAAAAGCAtaacaaaacaacagaaaacccTGAGCAAACTATGCAGTTAAAATAGGTTTTGAATTCAGAGCCAAGCGATGAGGTGTCCCACACCTACTAACTGCTGCAGGGGTGAACTGAGTGTAATCTCTCATATTCAGATGGAAAGCAACCAATCTTTTTCTATTCTTTTGCAgttctaaaatgtacagttacCATAGAAACAGTATTGTCAGAATATGGCAATATATGCAAGATTAACTTACCCACACCTCTGATGCAGCTTCCTTTTTTCTAAAGGCTTCAGAAAGAATCAGACAAGGGTTTGATTTAAGTGTTACTTACtcgataaaatatattttaaaaatctaTGGTTCATCTTTTTTAAATGTCGAGTCGAATCCACGTTTGGGGGGCTCTTCCATTGCAGGGGTAGGGAACgcgaggggaggagggggtgtgttTCTGAAGCACTACCATGGCCATGGTGCCATTCGGCTTGACCACGTCGTTGACTCTTAGCCCTCACAACCCTGACATTTCATTTCTATTTTCTTTTTGATTTGTCTTTGTTATTGTTGTTTGTCCCTTTTTGAGTGACTGCTTTGGGTACTTGACACTTTATATTTGTATACatgcgtgtgtatatatatatatagatatacacaTTAGGTGGTGATGATTTAATGCTGAGGTATATTAGCTTACCAATCGGGGTTTCCTTCGGCTTGACGTCAGATTTCTCACAGAGTGAAGCTTGTGGGTAAAAGAGAAAGGAAACTATATGAATGTTAGAATATATTGAATTTAGAAACCCATTGGTCCTAAACTTAACACTTGATTGAGATGTATATAGAGTTCCTGCCTGAAGGTAGAAGCGATACTATGTGGTTAACTTTGTGCAGTTCTGACAGGATCTGTCCTCTAACCAACAGCAGGTTGAAAGAGGAAAAGCAGGGATAGACCGAGATATATACGTTTGCACAGCTTCACTAAAGAGATCCCACAGAGAGAGGTATATTTAAAGGAGGTTGTTGAGAAAAGGTGTGTATTAGTGCTTATTCCAATCTTTTTTGCCCTAGGGACCACGGAACCATGAGGCAACCTGTGTGATGAAGAGAGCAATAAATACCTGTCCAAGTTGGGAGGCCAAATAAGCACACAGCTGCAGGGTGAGGCAGGTTGAGGGGAGGGGGATTTCACAATGTCTGTTGCATTCCAAAATATAATCTCCCCGGCACAGCCACTTTTCCAGGCAGAACGGGTTCAaatcagacattttctctctctcactttagtTCTCCATAGCCCCAAAACCAGCCTGTGCAGTACATGGTATTATAGAGCCCTGGGCAGAGGAGGTCTGGTCGGTGGCTGACTGGACTGCTGCTAGGTGTTGGTGTGTTTGGCAGCCAGGGTCTTTTCTCTGACTCACTCACTAGACTTGGGCTGGGAGTGTCAGCAGCTCCTCCAGTTGTGGACACGTTGAAACATGCTCCCCAAACTGCCAGTGCACTAAAAGCCAGGCAGCCATTATAGTGGGTAAAAAACATGAGGGCAGCCACCAGAGATCTTGGGGTGTTGCTCCACAGCCTTATGATGTGTGTTTGGAAACGGCCACTGGTTCACATAGATCTGAACACGTTTGTCTTTGTGTTTTGAGTCGCTTGGCTTGTCAACTCTGTTTTTAACCATACTTGTACACTGGTTTTGGGGCAAAGGAGAGTGTGCCGTGCCGGTGACTGTAGATTGAATTCCCCTGCCATTGCTGCAATGCTGTGTCCTTAGTATCAGTCCTTTGCACCTTAATGGGAAAGAAGCAGGTTCTGAATGCACTTTGTTACTGAGAAAGGCACTTTTGTCAAAGAAACGGGTACTTTGAAACAAACTAAGGTGAATTAGCTTAATATCCCCATCGCAAGTGGTTCCGTTAAGCTTGTTCTCTGGTTTTGTTCAGTTTTTGACGACAAGCTGCCAAAAAAGAAAGATGTATGCGTGTTTCGGGTCTCTTAAGAGAAGTCAGGCGGGTTCAAAAAACGAACAATGTTTTGTGaccttaaaaacattttttttttaaagacaaaatAACCCCATGTAACTGATTGCACTTGAAGTTAGGTTTGGTAAAACAAGCTCTAGTGAGTTGTCTATGTTCATGTCTTAATGCAGAGtggggggtggggtgtgtgtgtgtgtgcatggctgGAGGGTCTCAGGGCAAGCCTGGATAAACAAACTCTATCTCCACCCATCTGTTCACCAGCTCCCTTCATAGCTCCACATATTATCACAGAGAAGAGAACGCAGTCAGACACTCTCAGACCAACTGCACGGCAGTTCAATCATACACAGATAGACCCTTTTCCAAGTAGTGGCTAactaacggtgtgtgtgtgtgagtatactTGAAACTTCCACACACCCCCAACCATCTTTTCCATCGCTTTTCACTGCTTTGTATTCTGTTGAAATCCTTATTTCCCTGGGATGTTGACTCCTTCTCTTAGAAGAATGCAAATCAATAGTCTGTCAATATTTGATATACACAGATCAAGTAGAAGACAAGGAGGTAGATGAGAGGGGTTGATATGTATAGCCTGACAGCCAGGAGCTCAGGATAAAGTCATGTATATGAATAGGTCTGATGAAAGAAGCCGTAGTCAGGTGATCTGTTAGGGGTTCTAAGTTATCACTCAAGTAAATGTAGCCATCAAAACGTATAATGTTCTTGGGCCTTAATATTGTGATTTCAAGTTGTATTCCTATTTTATTTCTtggttttattattttatttcttgGTTAAGCCAAAGTTACCCTGATTGTACATAGTACACTCTTATAGAGTTCTCCCTAAATTGCTATTCATGTCTTGTATATGATATAAAGGTATGAAAGTAATTCTAAACATGTCCAGAATGAGACCACCTCTGACCAAGCCACACACCAACAAAACCCACCCCCTCGATATGTATGCAGGAAATTGTGTAGAATCAGTTCACATTCTCTTTATTTCCGTGGACTAAAATCAATAGTGTAGATGGAATAGCTTCtcttttatgtctttatgttgaATTCTTCTTAAGGTGTCCCTACAGCTTCACTTTTTTTCTAATCAACTTTATGGCTGTTTTGTGTGTGGGTCGGGGTATAGGAATTGTTTTAGGGAGGGTATTTTCTGAGTTCGATTAAAAGGGGTGTTTTGGTCGGGGATATAAAGCCTGATAGCACTGGAAATAGTGTTTTAGCTGAGACAGCGAGAGTTTGCACTAAAGTCCTTGTCCTACTAAAGGAAGGAGGGCGTGAGACCTCAGCAAGGCCCTTGAGTTTCTGTGAGCACAGGGTGTTATACACTCAACGGTCCAACACAGACAGTCCATCCATTCCCCTAACCAACAAGACTTAATCATGTAGAGGTTCTTCTGAGAAGTCTACCAACAAAAGACTTCAAATGTATGGGATTTGAATACATCAAAACCTGAAGGTGCTCTGAAAGTTTTAGGATGGTACACACAGAGGAGACAAAACTGTTGTAACCCTCTGAGCAGTGTGTTTAAGGTCTAGATGTATTCAGGTGTCCTTCAGTTAGAGTGAGTGTCCCTGGGACTCTCTGGCCTTGTCTGAGGACTAAGCTTTGTTTAATGGGTCCAGTAGAAGTCTGAGGCTGGGCCTCCGTCTAGCTCCCAGGTGGACATGGGTCATGGGCAAGAACGTGACTTAAAATGGAAGGAATGGGAGaacctttctctccctcattctaaTTTTAGAGAGCCACACTCTCAATCCAACTCCCACTGTAGTGTTTGACCAAACTACTATGACTTACTTGAATGAATTGGTTATTGTGAGAAGTGTCCCTGTGAGAGAAACATACTACTGGgtgatgtagtggtgtagctCTCTCCTCCTTCGTGGTCCTATGCTCCCATTCCTGCTGAGACCTCCCAGCCTCCGCCCTAGACCACTGTTACTCCAACACGTTACGCTGAGATGTCTCACAACTCCTTAAAGAGAAGACGTATCGTTGGGGTTAATCCAAAATCCACCAGATGTTTTGTTCCTAATTCACTATGACACAAAATAAAATGTCTGAAAGCATTAAAAACGACACAAAACATTTGATAACAATGATAATTGTAATAATCATGGGACAGGAGTGGGTGGTGGTTGGAGGAGTGTGTTTTGTTAGTGGTGCTGCACACCTGAATGTCCAGGCTGGTGAAGCACAGCAAGTTGAGGATGACATATGTAGTATGGCATAATGCACAGCGTGGCACTGGCACTTACACAGCCATCCCTGGGGCCAGAGAGGctgttggctggttggttggccaGTTTAGGAGTTTCTCTACGTCAGTGGGCTACAATGGTTTGCACAACGTGGGAGGGCCAGGATTGGAGTGGGAAGGGACCAAATTGGTCAGCAGCGACGACATGGGAGAGACTAGATCAGGGTTGCGGTGCAATGGTTCAGGTTGCCCCATCTTGTTGTGTTTCACTGGGAATTATATGATGTAGCAAAATTGTGGAACTGGTGATGGGGAATGTTGATCTATTTTTCTGTGCTTCTAAGTTGAAAAACAACACTGAAATACATGGTGTTCCTGTTTCTGTTCAGTTTGTGGTTTGATTCAGAATTAACATCTCTTTCTTTGCCTTCCATGTACAATTGGCAAATTGTACCAATGTTTAAAGAAAATGGTTTTCAAAACAAGGAGTGCGGAACAGTTGGTTCCCCATTGCCATgtgactgacccccccccccccccccccccccccccccgttactATTGTTAATGTTGATTCAAAAGCTTGTCTGTGGGAGGGAGAGTGCTGAGAAGTGTGTGTTAATCAGGTTGAAATGTATAAAAGTAGCTGGGTATAAGAAGCACAGGGGGGGTTTCTCTCTCCAGACCTTGGTGTCCACTTCTCTACTGACTGGCCTTTGATTACAGATCACAGGCCCTCAGCAGGGGAAGCTAGGAGgcaaagggggagagagagagagagagagacttgtggTTTGAAGTCACCAACCAATAGAGGATACATTCCATAACTTCATACTGTAATTTCCACTTTTGAGTCTTGGCGTGGGGAGACGGagggggtggaaggagaggaacAGTCAGCGTTTTACAGCCGAGTGTTTCAATCTGTCCGTCCCCCCTTCTACCACCCCcagtctgacagtgagttgggCCTTTCCAGACCTGGCCATCcaactgcctgtctgtctcagctTCTGCTATTGTAACAAAGCACTTTGCAAAAGGCCATCCAGAATATTGTGTGCTGTTGTTTTTTTGGTTATTACTATTGTTATTAttcttgtttatatttttgttctcatTATGGATGATTATTTAAATGCAAAAACTTCATGAAAAAATGAAAACTTGAATATTTGGGTTTAGGTCCATTTGAGCTGCCGCCCCACAAGGCCATACATACACTTCTGGCACACACACCGTCTCAGCTGATAGATAGATACTCCGAGTGGAAGGGTAAAGGCAAGGTCTCCCTATCTCCACAtacaatctcaaatatatttggaaaACAAGTCATATAAAATCATTGGGAGAGTTGCATTGCACAGAAACTTCCATAACATAAGCTTTCTGAGAAGGCGAACTGTGCTGTACTACTTAATGTCAAACATGCAGATTTAAAGCTGTTTTATTTTGTATCCCTCACATCATTTACACGTAGTAGCCACATTAATGTATGCGGTGTCTATGCCCTACACTAGTGACCCTTGTGTAGCTAAAGTAAATTGCTGGATCTGGTATAAAATAGACACAACCAAATGATTATGCCATTTTTTGTCACCTTTGGATTTAAGGTTTTTTACAGAATCGATTAATTGATTGGCctcaatagattttttttttttttccttctgtCAAATCAAAATTAGTTTCAGCAAAATATAGTATGTAGACATATAGCAGGTGTGAGGGAGAAGAGTTATTATCATTGTAGAAGGATTTCTGACTGCAAAAATGACAATAATCATCCATACTAGTTTAGAACTCTGCTGCACATTTGGGGGAGGCAGAATATTTCCTGTCTGTCAGGCTTGGATGCTAAAAACCCTATCCTCTTCTTTAAAGTCATTTTCCTTAAACATTGGCTGTTAGTGTCTGTTGGAAGTTATGCGGGATAGGTGGTTTTGGAGATTTGCACTTTTGGCTACAAAAATAAATTGTGTTGTATATGAGACCACTAAATCCATACCATCTAAACCATATAATTTCATTTGTTTCGgtttttgttctgtttttcttttttaatATATCCAAAAATGTCTGTTGTCCTGGTTTAAAGAAAtttctattaaaaaaaaacaatggtTGCGA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K10494 ZBTB7; zinc finger and BTB domain-containing protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU482386 lncRNA downstream 45317 63409798 ~ 63417187 (-) False G425811
TU482385 lncRNA downstream 45317 63409920 ~ 63417187 (-) True G425811
TU482478 lncRNA downstream 128929 63333058 ~ 63333575 (-) True G425892
TU482471 lncRNA downstream 139492 63322563 ~ 63323012 (-) True G425886
TU482470 lncRNA downstream 139652 63322563 ~ 63322852 (-) False G425886
TU482553 lncRNA upstream 19583 63511188 ~ 63511413 (-) True G425962
TU482554 lncRNA upstream 21295 63512900 ~ 63513962 (-) True G425963
TU482555 lncRNA upstream 24643 63516248 ~ 63516504 (-) True G425964
TU482557 lncRNA upstream 26916 63518521 ~ 63518796 (-) True G425966
TU482559 lncRNA upstream 32308 63523913 ~ 63524112 (-) True G425968
XM_021603811.2 mRNA downstream 19075 63417964 ~ 63443429 (-) True LOC110524290
XM_021603807.2 mRNA downstream 19076 63417964 ~ 63443428 (-) False LOC110524290
XM_021603800.2 mRNA downstream 19077 63417964 ~ 63443427 (-) False LOC110524290
XM_021603801.2 mRNA downstream 19077 63417964 ~ 63443427 (-) False LOC110524290
XM_021603798.2 mRNA downstream 19078 63417964 ~ 63443426 (-) False LOC110524290
XM_021603819.2 mRNA upstream 822 63492427 ~ 63502367 (-) True LOC110524297
XM_021603817.2 mRNA upstream 11011 63502616 ~ 63535065 (-) True LOC110524294
XM_021603822.2 mRNA upstream 212015 63703620 ~ 63744699 (-) True lingo3a
XM_021603823.2 mRNA upstream 289124 63780729 ~ 63783015 (-) False org
XM_021603826.2 mRNA upstream 289128 63780733 ~ 63783015 (-) False org
TU482381 other downstream 159110 63300924 ~ 63303394 (-) True G425810
TU482441 other downstream 202035 63259648 ~ 63260469 (-) True LOC110524282
TU482212 other downstream 562001 62894659 ~ 62900503 (-) True G425647
TU482168 other downstream 612257 62850004 ~ 62850247 (-) True G425612
TU482117 other downstream 654382 62803938 ~ 62808122 (-) True LOC110524277
TU483573 other upstream 792363 64283968 ~ 64286359 (-) True LOC110522986
TU484037 other upstream 1075076 64566681 ~ 64568380 (-) True G427287
TU484034 other upstream 1210269 64701874 ~ 64706025 (-) False LOC110524330
TU484039 other upstream 1234322 64725927 ~ 64732972 (-) True LOC110524330
TU484689 other upstream 1413440 64905045 ~ 64910998 (-) True LOC110524332

Expression Profile