RNA id: XM_021603817.2


Basic Information

Item Value
RNA id XM_021603817.2
length 5244
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC110524294
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63502616 ~ 63535065 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTTGAAGCTCGTAGTGTGGTTGCGCTGTGATTGGAAGCAGAGAAGCGTCGAGCAGCGAGCGTCCCGTCTGCTTCTCACTGGTGAAGGACTACCTTTCGGCTCTGCCTCTCGCGGGGCTGCTGTACAAAGATGGCGGGCGAACTGGTGGAAGCGATGAACATGGTGAAGAGTTTCCGGGTTTCTGACCTGCAGACGCTGCTGGCCTCCATGGGCCGGAGTAAGAGTGGTCTAAAGCATGATCTGGTGGGACGGGCGCTGAGGCTGGTGCAGACAGAGTACAGCCCAGAGCTGCTGAAGAACGTGCGGCAGCTGTACGAGTCACGCTTCCCCAAGGCGTCAGGTTGGCTGGCTGCTCGGCGCCCGGAGGGGGTTCCGGTGGCCTACTCCTCCCTCAGCTCGTCCCCCACAGGCACTCAGGGCGCAGACTACCTCAACGGCATCCCCAAGCTGTCCTCCACACCTGCGGCTGAGGTCAAGCTGGTGTCGCTGCCCTTCTACCAAACTCTGGAGACGCTGTTGCCGCCAACAGAGCTAATTGCCCAGAACAGTGAGAAACTGCAGGACAGTCAATGCATATTTGAATTAACACAGAGCCAAGCGGACCAAGTCAGAACCTCAACTGAGCTTCGACCAGGAATGAAGGCAATCCAGGTGGTTCTTAGAATCTGTTATACAGACTCAATCGGTGTCCAGGAAGATCAGTACCCTCCCAATATTGCTGTCAAAGTCAACCAGTCCTACTGTCATGTACCAGGTTACTATCCATCTAATAAGCCAGGTGTGGAACCGCGTCGTCCCTGTCGCCCAGTCAACATCACACCCTGGTTACACCTCTCCACTGCCACCAACCGGGCCACTGTCACATGGGGCAACTTCGGCAAGCGCTACTCGGTGGCAGTGTATTTAGTGCGGGTCTTCACATCAGCAGAGCTCTTCAGCCAACTTAAACACTGCTCAGTGGAGAGTGCAGAACGCTGTCGTGAACGCATCCAGGACAAGCTACGCTTTGATCCAGAGAACGAGATCGCCACCACAGGGCTACGGGTGTCCCTCATCTGTCCTcTAGTGAAGATGCGGATAGGAGTGCCGTGTCGGGTGCTCACCTGTGCCCACTTGCAGTGTTTTGATGCCATCTACTTCCTGCAAATGAATGAGAAGAAGCCCACGTGGACCTGCCCTGTGTGTGACAAACAGGCTCCCTTTGAGCTGCTCACCATCGATGGGCTGGCATCTGAGATCTTAAAGGAGACCCATGAGGATATTGAGGAGATTGAATATCTGACTGACGGTTCATGGAGACCTATTcgagatgagaaggagagggagagggaacggAGCAACACTCCTGACTATCCTGTAGTGGATATATGTGTTCCTGAGGCGAACGGCCACTCCCCAGCCCACAGCAGCACCAGCCAGACAGGGAAGTCAGGAGCAGGGTCCACGGCGGGGGGAACGGGCGGAGGAGTGGTGGTAGATCTGACTCTggactctgaggaggaggaggaggaggaggggggaggaggggctaGAGGAGACAGCGATGACACAGAGGACAGCCAGGACAGCCCCGCCCCCAAGAGGGGCCGATACGACTATGACAAGGACCTGGTCACTGCCTACTGACTGGCGGACTGACCCCACAAActgagagagagggttgggctTGATTGGAGGACAGGAAATCATTAGTCCCTACTGCATCCCCTGCCCGCCCGCCTGCCCCCACTTCTCTGGTGTttatccacacacagacacactctcatacatgcactgtcaacctctGGAGTGGTTAGGCTTCATCTATACACCACTGGAAACAACAGCTCCCTAACACTTGTGACTCACCCCTCCCAGCATTCTGTATCCTCCCTCCTTAGAGACAATTTAATATGGTAACCTCCTCTCAAACtattccccctccatctccttgTACTTTGTATTTGACTTGAATTTAAGGCTCTCAAAGCCACAAGCATTTGGTGTTTCTCCACTTTTTGTGATCACAGGCAATGGGAGATATGGAGCATCGTCGTTGTTCAGTAGTAAGAGGTCAAGATGACCTATATGAAGAATTTGTGAATCGAGCCACAGACTAGATTTTTCTGGAATATGATGAAATTGAACACCCCAACTTTCTGTTTAATTCATTCAGACAATGAAGACAAAGAAAATGGGCTCTAACAGTATTTCAAATTGTTTAAGTCAGAAAATCCCTAAAAATGATTTGTTTGATACTTCCCCCATTTAATTTTGTCCTTAGATGATGACAACCTACCTCAGTCGTACATAGCAAACTTGCTTGACCAGAGAGAGTAGCACCTGAACTATGGTTGCTATAGTATTTTGACAAGAGGgtctactatttttttttttcttcactcgcatcacttaaaaaaataaagaaacccatTAAACATTTTATACAACTTGTACGGCCCAAATAGGGAATAGGTTATGGGaagcagggtcatgttcattagggcacaatagcaacatgttttttttttaatggtttgTAATGGAAAGAGTTCTTCCCTGTTTCACTCCGTTtgagtgtttttgttttgtgcTGAATATGACCCAGGGGTGCTGTATCTTTGAGAAGTTCTTGTAAGTACTCCCCACTGCATTGAAATATATGATTTCAGTTGGTGTCTGATTAGCTACACAGTATGACAAGCAATTGTCATAGTGGCGGGTAAGCAGAGACCAGCAGTTATCATTTGAGGTTTTGGAACATAATCTTTTCAGATTCTGCCCAATGTTCTGTGTTGCCAATGTTGTTCATATTGATCAAGGAAACTAATACAGCATGGATTATTTTCACCTGCCAATTTGTCAGTTTAACAGTTGGATAGTCTGAGACTAAACACTACTGCATTCAACCTTCTTCCCCCTAAATCATGAGAGCTTCAGTGTTTTGAACCAGATTTGTTTTTCTTTCAGTTTCTTAAATTtgttgatatttttttttattgaacaaGGCACTTGACTAAAGAATGTCACATTTTAGTATCCAAACAAAACTGGTCAAACCCATGTTGAGGCAATTGTGCCAAAGCAGATTTGTGTCAATTATCTCTTGTTGCAAGGTCAGATTTGGGTGCCTTTTTTTGTTTTGAGTTTAGATTGGTGGAGGCTGGAGCCTACAGTTGTTTGGCTATTTGACCTGGTCTACACAGGAAGTCCCAGTaagaaaatacattatttaagACTATTTGTCATtatttactgttttttttttgttgttgttttttacagtgTGGGGGACTTAAGGAGGGATGTATCTCCAGGTGTGGAATGGTATCAATTTGTGAGTGTCGACATCcttttgacttaaattgtcttTGTCTAAAGTATAGTATTTATTGATAATTGATTGCGTCACAACTTTGTTTTATTTGAAAGGCAGTTTGTATTAAATTGTACATATGTGGCAATCGAGTGCTGTACCAGAGCCATTTATATATGGCTTTGTACTGTACACAAGTTCCCAGTAAGGGGTAGCAGAACACTTACGAAGCTGGAACCTTTTTTGTGAATGAATACGTGGCAAACTGAATGATCCAGGCTCAAGGCACTGCCATCGTTAGACATGTCCCTTTCCGAGTTCTAACCAATAACACATTCTGCCTCTTCCCAGTTCAACGATATTACACTCAAATTAGCCTTTATTATTGCATAGGCCCTAGATGAATGTCCTCTCTACAGGTAGTTTAAACGATACAACAGTAATTACTGCTTCAGATGAGCTTTTTCCACAGGCACAGTTCAAATTGTAGTAAACATGGTTCATCTTTTGGGTTACAAGGGTTGCTGAGACTTACAAACTTTTAATATTTTCATTCCTGGTCATTAGATTCCTCACCCCAGCGATAGTCCCCGTTTTAATTTGTGCTGTTTATGGCGTTTGTCTACTTTCAGGATTTTATAGAACAGAGTCTGTTGTAAATTCCTAGAAGTCTCTCAAATGGTATTGGTAATACATGCATTTGACTATAGCATAAGCATATTGACATTTTGTGATCATCGTGAATTCAGACTTGCATAGACACTCAGTACTGTATGAGTAAGCCATTTTGTGGAAGATGTAGTAGTATACCTAATCTAATAATGAGATGGTATTGACTGAGGAAACGTATGGGATCTTGTCTTCCACTTTTCTGCAGTACTCATTTCCATATATTTCTAGCTTGCGGATGTTATACCGATAGGTGAGTTCTGAAACAATTATAGGTAACACGCATTGTTTGATGGCACTTTCTGTCAAAGAACCCCAAACCGTAGCGGTGTCCCTGAATATGACCATAGTTGTATGATTCATGCATTTTAAGCAACATCTTATTATGTCTAGCAGAATTTCATCTTAAACTAAGCCAATCTATCCAACAAATTACTCTACAGATTTGAATCGAGTTGTTTTAATTTATAAGTGTAGAACATCACTGCGCAGATAATAGTTTTCCTCAAGCTTTTTCATATTGCGAGACAGAGGTGAAGTACAGGTTGTTTCTGAGGAACTGAGCCAGATGGTGAAACCTGGGTTAGGGTCCAGACTGGGTTTTAAGCAAATGGTGGATCAGGTCTTGATGGTGGCATTCCTTATTATAACAATGCTTAAGGTAGCATGGGCAGGGCTTGCAACCCATTATGTAAATGTTTTGTTTGTCTTTTATATCTTCGTATTAAAAGACAATACAATTAAAATATTTTATTAAGCTTCGAATCGCCTTCAGTTGTTACAAAAGTCAGAcacaataaaatcacaaataCCAGTATTGGAACTGATGCCACTTTAGGTGTAAGAGGTGGttgggttgtcactagttaccacagccacaaagtcatttATGGCTAATTatcgcctatttctacaatttaacTTATTAAAATCTGACtttaaccttatgcctaaccttaagaccaaaaagcaaatgtttgttttcattaGTTTTTACGGTATAGCCATTTGActttggctgtggtaactagtgacaaccagaTGGTTGAGGTGTAGATTGGTGTGACATCATTTACCTGATGCTGGGGCCTCAGGGACACATTTGTCTCCTTTTCAAAAATAACTGTACAATTCAAAATCATATTCTAACACCTGTTATTGACTTGTGGAAttaattaaactttttttttctctttttttatcGAATTGTCTGCTAAGTCATGTTAGCTTGAAAAGTAACAAGTTCCTTCTGGAAAATAAAGTTATTCAAAACAGAAA

Function

GO: NA

KEGG:

id description
K16065 PIAS4; E3 SUMO-protein ligase PIAS4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU482386 lncRNA downstream 85429 63409798 ~ 63417187 (-) False G425811
TU482385 lncRNA downstream 85429 63409920 ~ 63417187 (-) True G425811
TU482478 lncRNA downstream 169041 63333058 ~ 63333575 (-) True G425892
TU482471 lncRNA downstream 179604 63322563 ~ 63323012 (-) True G425886
TU482470 lncRNA downstream 179764 63322563 ~ 63322852 (-) False G425886
TU482606 lncRNA upstream 55585 63590650 ~ 63590864 (-) True G426014
TU482711 lncRNA upstream 106382 63641447 ~ 63641775 (-) True G426112
TU483259 lncRNA upstream 175507 63710572 ~ 63779992 (-) True G426613
TU483272 lncRNA upstream 206896 63741961 ~ 63769021 (-) True G426626
TU483253 lncRNA upstream 263115 63798180 ~ 63802998 (-) True LOC110524304
XM_021603819.2 mRNA downstream 249 63492427 ~ 63502367 (-) True LOC110524297
XM_021603813.2 mRNA downstream 11011 63462504 ~ 63491605 (-) True LOC110524292
XM_021603811.2 mRNA downstream 59187 63417964 ~ 63443429 (-) True LOC110524290
XM_021603807.2 mRNA downstream 59188 63417964 ~ 63443428 (-) False LOC110524290
XM_021603800.2 mRNA downstream 59189 63417964 ~ 63443427 (-) False LOC110524290
XM_021603822.2 mRNA upstream 168555 63703620 ~ 63744699 (-) True lingo3a
XM_021603823.2 mRNA upstream 245664 63780729 ~ 63783015 (-) False org
XM_021603826.2 mRNA upstream 245668 63780733 ~ 63783015 (-) False org
XM_021603825.2 mRNA upstream 245670 63780735 ~ 63783014 (-) False org
XM_021603824.2 mRNA upstream 245670 63780735 ~ 63783015 (-) False org
TU482381 other downstream 199222 63300924 ~ 63303394 (-) True G425810
TU482441 other downstream 242147 63259648 ~ 63260469 (-) True LOC110524282
TU482212 other downstream 602113 62894659 ~ 62900503 (-) True G425647
TU482168 other downstream 652369 62850004 ~ 62850247 (-) True G425612
TU482117 other downstream 694494 62803938 ~ 62808122 (-) True LOC110524277
TU483573 other upstream 748903 64283968 ~ 64286359 (-) True LOC110522986
TU484037 other upstream 1031616 64566681 ~ 64568380 (-) True G427287
TU484034 other upstream 1166809 64701874 ~ 64706025 (-) False LOC110524330
TU484039 other upstream 1190862 64725927 ~ 64732972 (-) True LOC110524330
TU484689 other upstream 1369980 64905045 ~ 64910998 (-) True LOC110524332

Expression Profile