RNA id: XM_021603820.2


Basic Information

Item Value
RNA id XM_021603820.2
length 8221
RNA type mRNA
GC content 0.47
exon number 2
gene id onecut3a
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63613897 ~ 63637179 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAATAGGTTACAAACAAGCAGGCACCATACCAGAAGTGTGAGCAGTGGTTGGTGGCACAGCTCTTGTCGCGGGCAACTGATCGCTtgaaatcatgctggattgactgAAGAGGCTACTACAATCAATGGCTTGGCTTTGAAATCGTTAACATTTTATTGGAAAGGAgtgtgtgagacagagggagagggagagcgagggaacaAGAGAGTGCGCacgagtgagagaggggagagagaggtgtaaataAAGATTATTTCAACAATGGAACTTACAATGGAAAACATTGGAAATCTACACGGCGTATCTCATTCTCATCAAACGGGTGACTTAATGAACTCTCCGCACCACGCACGGCAGTCCTTGGCGTCGCATCGGAACTTGGTGTCGCACGGACGGTCAGCCATGGTGTCCAGTATGGCCTCAATATTAGAGGGAGCTGGGGAGTATCGCACAGACCATGCATTGTCCGGTCCCTTGCACCCCGCCATGACTATGTCCTGCGACTCCGGGATGACCATGAGCAGCACTTACACTACGCTGACACCACTGCAGCACCTGCCTCCCATAGCCACCGTCTCGGATAAATTTCACCATCATCCTCACCCGCACGCTCACCACCATCCGGCCCATCAGCGTCTCACCGCCGGTAACGTCAGCGGCAGCTTCACGCTCATGCGGGACGACAGGAGCCTTGCCTCAATGAGCAACCTCTACGGCCACTACCCTAAAGACATGTCCGGCATGGGCCAGccactgtcccctctctccaACGGCCTCGGGTCTTTGCACAACTCGCAGCAGACTCTTGGCGCCTATGGTCAGGGAGCCCACCTCTCCAACGACAAGATGCTCTCTTCGGGAGGCTTCGAGTCTCACGCAGCGATGCTGTCCCGGAGCGAGGAACACCTGGCCCGGGGATTTGGGGGCCACGGGGCCGGGATCATGTCATCCCTGAACGGTATGCACCATCACAGCCATCCGCACTCTCAGGCTAACGGATCCATGCTCTCTGACCGGGAGAGGCAGACGGCGGGGGGCGGGCAGGGAGGTGGGTCCGGGCAGGTGGAAGAAATAAACACCAAGGAGGTGGCACAACGAATAACGGCGGAACTCAAGCGCTACAGCATTCCCCAGGCCATCTTCGCCCAGCGGATCTTGTGTCGGTCCCAGGGAACCCTGTCTGACCTGCTGAGGAACCCTAAGCCCTGGAGTAAACTCAAGTCTGGCCGGGAAACCTTCCGGAGGATGTGGAAGTGGCTGCAAGAACCGGAGTTCCAGAGAATGTCGGCACTCAGACTAGCAGCCTGCAAGCGCAAGGAGCAGGAGCAGCACAAAGACTGCAACATGGCGCCCAAAAAGCAGCGGCTGGTCTTCACAGACCTGCAGCGCCGCACACTCATCGCCATCTTCAAGGAGAACAAGCGCCCATCCAAGGAGATGCAGATCACCATCTCCCAGCAGCTGGGCCTGGAGCTCAACACCGTCAGCAACTTCTTTATGAATGCCCGGCGCCGCTGCGTGGATCGCTGGCACGACGAACACGGCACCAGCCCCGGCCAGCCGGGCACCTCGGCCAACACCTTCTCCAAAGCCTGAGAGGCCCGGGGGGAGCCACGGGGTGGCATGGGGATGGGAAGGTAGTACCTCCTGTAGCCCACTCCGTTCCCAATAACCATGTTGATGCCTCATTCCTTCCATGCAACCACCTCTTGGTCAGTCGTAACTTTAACCACAACGATCTGAAAGTCTCACCACTGGACTGTTATGAAGCAAGTGAAACGTAAAGGTAACATGTAGTCAAGTCCACACAAGGACAATCATCTTTTTTTTGATTGAATTGGGTTTCTGTTGATGGTGTCAGTCCATCTACACTACAGGCACCATGATACGTTGCTATGTTTAAACGATCTCAACATCAAGCCTCAGTCAGCCTCCCTATCCAGGTAGTTGCTGCTGAATCCCTCCAAGCTCTCCCTTTTGTGTCTGCTATGAGTCTGCTCAGCCCCATTCTCTACTCACATTTCTCAACAAAGACAAAAGAACATCAATAAACCTGacagcacacagccctgttatcTAACCCAGTCCTCTGCGCAAGACCATCCTAGAGAAAACAACACAACCCCATGAAAAAACAAAAGCTCGACcagtcttctcctccctctctccactccttctTTGCCAAAGGTATTCCCTGATGGCCAGCCATTTCAGCGAGCCACTCGGATCATACGCCGGCAAACTAATGAATTGAAAAATGAATCGAtgcagacagggagagggagcaggGCCTTGACCCTTCCTGAAGGTGAAACAGAAGACGCTTGGCAGTAAAGATACTCAGGTCTGCCCGGCTGCCCAGGTCTATATTTTTGCACAGATGTTGGAGGCCTGCAGGGAGACTGTCGTTGCTTTGGAGAAGCAGAAGCGTCTGTGTTTGTGACCATCGGGGAGGAGATACGTCTGGACATGCTCTTTGTTCAGGAGGGAGCTGCTTTTCACTGATCAATACAGAAACCAAGCAACAACACGGCCAGGCAGGCGTCCAGCCAACTGTATTACAGCTGCTGCAGAAAAGAATGTAAGAAGAGCACATGGGGAACTCAATGGAGGTGGCGACACAATGGCCTCACCCGGAGGCAGCGTCCAGTCTACTCTGCACTGAAGGTGCCCTAGTGCCCCCTGCTGGTTATAGGAGAAGCTGCAGACCGCAGTCCTCTTAGGAGAAGCTTCTCAGTGTGTTccagggctggggagagagaggccaTGGCACAACATTTTCAGGCCCTCGCACCTCTCTGAAGGCAGATCAATAGAGAGCCATTATCCTATTGTTGTTCCTCATCCAACAAGGACTGGTGAAGTAGGAGGAGGGGATGGTTCAACCAGCCGCCTATACACTGGGAAAAAGAAGAGGCAGGTTTTTAGTAAACACTCCAAATTCGTTACCTTGATAACACTCACCAAGCAAATAGACTACCTTGTGTCACAACATACACGTCAGGTTATTGAAAAGATACACTCAGAAACACATACAGTTGATATAGAGATATGTCTCAGTTTCATTTAGTGGACAGAGGGGTAATGATGGATGCAGAAACATTCGAGGTGCTACGGAGATTTAGTATTACATCATCGTTTACGCAAAAATGGTGGGGAGGCTTCCTGTTTTGAAACTGAATGACACACAGTTTAGATGCATCCGTCTTTTACCAAAAATAGGGATCAGCAGATTTGGAAAAGAGCCAATCTTCCACTTGATATTCCCACCCAATGGTTATTGTCTGTGGCTTGCCGCGACATACTACAGTCACAAATGCTACAAGAACTAGTGCCAATGCTAACTGCCTTAATGATAATCAGAGAATATGGCATTGCATTCACATACAGCTACAGTGTGCCCTACTCCTACTGATGGGCAGTATGTGCCATAGCAACCCAAAATAAACTTTTAAGTGAATTAGAATCTGCTTTTTtagaaaacaaaaaaatgtacCCGATTTTATTAAAGCATACAATACCAAACCTCAAAACTACAAAGATACCACAATATGTTACAAAGAAAATCCACCGACACATACAGGACACATTTTGAAACAGAGGAAAATCTCTCTCGCTTTCATTCTATCTTTGGTTATCTACCTCCTCTTCCCCTAccccctcttttccctctctttctttcttacaCTCTATAATATTGATGCGGGTAATTAGTACCATAGACACAAAGTTTATATTTCTTGTTACTTTTGTGCTCTGTCGTGCATAAGTAAGGCACCTTGTTGATAAATCAAAAAAATGACTttttaaaagaaaaaaaagatgGATGCAAGGACCGAAACCAATGAAGGACATCTTTTTTTGCATTATATGTGAATATTGACGAGGAGGAGATATCTCCCAAGAGAAGGAGAAACCAGGGAGATGGACGATGTATTCTTTCGTGGCGTTTCATGTCGGGCTGCGGGTCCGTACATCAGCACCCCTTTAATCTGAGCCTCAAAACTGGCTGTGGAAAGGGGACGCAGCATGACCTCCATACGTCCTTTCtggttatgtgtgtgtatgggggaggGTGTGAAGGTTAAAGGGGAGTTGGGACATGGATGCTATCTGAATGGTCTTAAAATGCAACTGTAGCATTTCCAACAATATAGTTAGATTAACTGTGCAGATTAGATAAGACATTGTCATGGTAAATGGTTTGATAAAACGGCTGTAAACTCACTTTGCTATAAGCAGTGAGTTTGAAGTCTCGAACGATGAGAAAAATTGATTTGTGGTACACAGTTCAGCAAGGATAGGATTCAGCTCTGTGTCCGTGGCTGAAAAAAAATGACCTTTGTTTGTAGTGAGAACCAATGTGGCTACCTCACTAAGCTGAGTGGTTTGTGAAACCGCCACGAATACCAAAGATTACTCCAGCCTGCCAGTCCAATGCTGCCTGGGGGACACACCAAAAAGAGCCCCCCTCTGCCCCAAcgctgttacagacagacacaatgacaCAGTTAGACACACTGACATGctccatacacacacagtgcagtcAGGCTGCATTGTGCCACAAAGGAGGAGGTGGCTACCATGTAGATTGAGTTGAGTGCCTTTTTCCTTCAACCACGGGTGGGACtgctctggacacacacacgcgcgcgcacacactcacacatagacaTTACATTCATTATTAGATGGACAGAAAGGGGGGCCAAACAAAGGGCGTGGGGGCTGTGTCAGCATCTTCTTTCATGTTGACTTTCCATCTTGATACACTAGAATCCAAGCACTTTATCATGAAGGAAGTCTAGAAAACATTTTCTATACGCTATTTATTTGAGACAAAAAAAATATGTTACTTTGAATTCCTTCGATGGCTTTGTTACGGCGCAGTAGTTGCTGTCGGAGTAGCGCAGAGCCCTAGTTTCTGTAGCCTGGTGTTCTTCTGCTCTCTGTCCCTTTACCCCTCCCAACAGAGATATTTTTATGTAACAGAAAGGGGGGTGGTTAAGGGCTTTGACAGAAGTCAGAAGTGACCAGGTTGTAGTTGTAATATCGCCCCATTGcatgccactctctctctccacacctggtGCCAGAACTAATGAAGCACTGGGCACTGGAACAGTCATTGACAATTATAGACTGACACaacttccctctccctccaaccccaccCTGTCTACTCGTCTCACACATCAACTTCTCCCCCTGGCCAGAGCTAAGACTTGGTAGGCATGTGTTGACAATTAATTCTGAAATACCTCAAACCTTTCATGTAAAGTTTATGTAATTTAACTTAAAATAGTCATGCGAATGATAACAATGATTATGATACTACGATACTATGATAGTTAGTTTTGGAACTTGTAACTTGAAGCTTTATACTGTTACATTTTTTAATTTGTTTGCTCATTTTCTTGTCTGTTTCCTGCTTGTTTTGCTACGGCATGCACTTCATGTTTTCATAAAGGAAAGACATTGTGAATGTTTCTGTGGAAGTTCAAACGGGAAAAGAACAAGGGACAGGAGAGAAGGCTAtaagaggaaggaaagagagagaaagagtgctaCAAGAGCTACTCAACACATAGTTAGCTCAACTCTTGGAGAGGTGTTTTttcaaagacaaaaaaaacacagaTTTGGATCGAATTCCAAAAAGTATCATTTGAATATCAACCAAAGGAAGACCTTTTTTACTCATCCTAAGCTTTCTTCTGACATGTTGTTCTCTTTTCTCCAAAACAATTTCACAGTTACTTTTGAAGGTTCCTGAGTGTGTTCAAGTACTCCTGATGttattaaaatataaaaaaacagcACCTCTCACTGAAAGGGGGGTGCAACCTTTTTCTTTCTGCATGGATATTGTATAACTGTATAGAAACCTACAGGAATGACCTGTGATTTtgtgggagaggaggaaggaaagactgggggggtggaggggggtatTTGGTAAAAGGGCGGGGTTGGGGTTTGGCGTTGGAGGAGTCTTTGTTTTTAGACTTTTTGTCACTGTTGGATTCACTGGTTGTGTGCATGTGTTGTTTCAACCCTTTCCCCCTCCCCAATGTATATAAATCCCGACAGTAGGGGGCAGTGTGCTGGGGAgattccactcctcctctccaatcAATCTCATTCAATCTCATTCCTCAGCCTGGCTACTAACAAGGTCCTGTTGGTGGCTGTCCTGCTTTTCCAAGGCCGGGTTGTTTCCTTGGAGTTAATCAGAGGGACTAAGCCACAGGCCTGGGTGTAGCTgcctatatgtactgtatgtctcatCCTTTTctttcatctgtgtgtgtttgtgcgtgtgcatTTGAATTTATGTGAAAAATTGTTCTTTCTTTGGGTTCTAATCTTTTTCATGCAAAATGTAAACATTTACCAACCAACCAGTACGTTGGCAACTGACCCCTCCAACCAGAGATGTTCTCATCTTCTGTCAAACAGCATATGTGCATCATTTCCCCTTGGGATGTAAAGTTGCCAGTCGGCCTGCAGTCAGACCCCGTTACCACCCCCAGTCACACTGTGCTCTCCCTCTTCTGGTACCTGTTAATCAATCAGAACCAAGTGTCTTTGTGATGGTAGAAGACAATCAGTTTCAAAACAAGGAAAAGGTCGAGAGAGGACAGGCCGGTAGGGGGGATTGGGAAATCGGGAAAAGAGGCTCTCCGGGTTGTTTACTGCTGTAGTGCCCCAACTGCCAAAATATGCCCACAACCCACTACCCCACAGTCCAATACACTCCCTATCATACATCTCATCACAAGCCACACATGTAGTagggtggcaagtagcctagtggtttagactgttgggccagtaaccaaaaaggttACTGATTCAAatcctgagctgactaggtgaaaaatctgtcaatgcgcccttgaacaaggcacttaaccataattgctcctgtatgttgctctgtctgctaaattactaaaatgtaaaatcaTCCCAGACATTTCGCCCTTACCTTGAGAAACTCTTACTCTGACATCCCTTGTATAGTAACCAATTTCTGATCAAGAAGGACACCCAACAACAttccctctcacctgtctgtctcaCGTGCCTTCCTTCACTGGCACTGCATTGGGTGGGAGAAAAACTACACAATGCAGTGCAAAACAGCAATCACTACATTTCCCATCTAACCCCTCTCCTTCTGATCTAATGTTGACAAAACCAGCCGTGAGAAATAAGAGGATATGGCTGGTGGCTTTTGCACAGAAATCTATGCAAACACCTGACCCCCCAATCTTAGTCATTGCTGCTGGGTCAGAGTGTACAACCTTCTATCCCCCACCTACCCTTTCCATTtcatgacccctgacccctcccgGTTTCCCCCAGAGTGGGTCTAGCAGCTCCAGACACTCAGGGTACTGTAGAGTGCCTGGAGAGGAGAGGCACTACAGCACTGACTCTCTAGTGGGTACCAGACTTTATTTTTACTAGATTTTAGAACGGTCCCAAACTGCCATTGACATGACATGGAGTCCATGCCCATACACGGGTAGCCTAAATCATTTTGCTATATGGTCACACGTAACAATGTTGGATagtctctgtttagggacaaggAAGGCCCCAGTCAATCAATGCAGACATCCAAATGGACCATAGTTTACATAAGTTTCAAAAGGCAAGGGTGACTTTCAGTAAACACAAACTAactcatacagacacacacacatggaattgAAGTCTGCCATTTGAGAGCGTATGCTAAAAACCAAAGATGAAATCAGAGGTATGAAAACCTGACCACTGAACCAAGACAATGGCCAGCTCTCAAAGCTGCTCTATTGACTCCAACACTggccatgtaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacacacacacacacacacacagcctctggtCTGAGAGCCTCTTTTCCCTCCTCCCACTGCAGAAGCCGGAGAGCCTGTGGATAACTTTTTGTTTAGCTCTAGTGGAGACTTTTTAAATGGAAAAAAATCTGAGTAATAGCTAACTGTTACAGAAAATAAAAACTTAAAAGGATAATATGGGTAAATTGCGTGTTTTGAAATAAATTAACAAATAAAACAAGGATAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU482054 lncRNA upstream 78676 63534413 ~ 63535221 (+) True G425505
TU482044 lncRNA upstream 85674 63527851 ~ 63528223 (+) True G425497
TU481963 lncRNA upstream 109711 63502741 ~ 63504186 (+) True G425434
TU481961 lncRNA upstream 118204 63494781 ~ 63495693 (+) True G425433
TU482001 lncRNA upstream 147841 63464112 ~ 63466056 (+) True G425466
TU482773 lncRNA downstream 161001 63798180 ~ 63802998 (+) False peak3
TU482774 lncRNA downstream 161001 63798180 ~ 63829666 (+) False peak3
TU482776 lncRNA downstream 161001 63798180 ~ 63826738 (+) False peak3
TU482775 lncRNA downstream 162453 63799632 ~ 63800172 (+) True peak3
TU482827 lncRNA downstream 179506 63816685 ~ 63818313 (+) True LOC110524307
XM_021601329.2 mRNA upstream 56774 63554638 ~ 63557123 (+) True foxq2
XM_036978044.1 mRNA upstream 237682 63322539 ~ 63376215 (+) False unc13a
XM_021601330.2 mRNA downstream 33022 63670201 ~ 63672004 (+) True si:dkey-172o19.2
XM_021603821.2 mRNA downstream 39230 63676409 ~ 63684848 (+) False nfil3-4
XM_021603827.2 mRNA downstream 151945 63789124 ~ 63798667 (+) False peak3
XR_002473571.2 mRNA downstream 179369 63816548 ~ 63818000 (+) False LOC110524307
XM_021603842.2 mRNA downstream 508917 64146096 ~ 64158106 (+) False crlf1b
TU481721 other upstream 562367 63045090 ~ 63051530 (+) True G425224
TU480579 other upstream 1306960 62283152 ~ 62306937 (+) False LOC110524265
TU480458 other upstream 1508025 62105523 ~ 62105872 (+) True G424079
TU480287 other upstream 1891873 61721537 ~ 61722024 (+) True G423922
TU478964 other upstream 2917992 60694257 ~ 60695905 (+) True LOC110524226
TU482675 other downstream 39235 63676414 ~ 63684239 (+) True nfil3-4
TU483050 other downstream 539849 64177028 ~ 64179386 (+) False sac3d1
TU483051 other downstream 539849 64177028 ~ 64179386 (+) False sac3d1
TU483052 other downstream 539849 64177028 ~ 64179386 (+) True sac3d1
TU483060 other downstream 606423 64243602 ~ 64244529 (+) True LOC110522985

Expression Profile