RNA id: XM_021603823.2



Basic Information


Item Value
RNA id XM_021603823.2
length 1104
RNA type mRNA
GC content 0.48
exon number 7
gene id org
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63780729 ~ 63783015 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ttgctaactggttacCTAGTTATACACATGCCGCATTCAACGAGTTAGCAAGTCTGACATTTCTGAGTTTAGTTCCGAATAGCATATGAACTAGTCACATTTTGCCTACCGAATGTGACAGGCTATTGTCGGCCTATCTGATGTTGGCCCATACCTTTCTACAGATGCTGCCATAATTCATAATTTCGCTAATTAGTGATTCGATAAATGGTCACAGTTAGCCTAATTGTTTGTGTGGGGTGATTGGCTCATCTTCTGCTATTCCGGGGTTCATAAGAACACTGATCACATACCGCTGTTATCAGCTTCCTTCCAATCTATCGCCACATTGATCAGTATGACCTCTGAATGTAGCGTCGCCATCGAACAGGACAACGACGGTGTTGAGGACAAAGTTGTGGTgaagagagacagtgtgttaacCACTGTATTCTGTCGCCTGTCACAGTTTTGGCCTGTCAGACTAGCGATGCGTGCTCTCCGTGGGTTTTGGTGGCTGTTGGGTTTCTCCCCTTCAGATGAGGCTTTTGTTCCTCCAGAAGAGGATGACAATCCTAGTCCAGCCCGCCACTGTCTAGCAGGCCGCAAGCGTCTGCGTCGAGCCACACGCATCCTGTTGGCCATCCTGCCTCGCCGTCTGCAGAGCGCCCTGGGCTACCCTGTGTGCACCAGCATCGGCTGTGCTGTATCCCCAGaggtgCTTTGCTCCCCCACTAAGCTCTGTGGGAAAGGCAACAAGAGGAAGCAGGATGACATTGATGACGATGAGGAGCAGCAGACCTGGGTCGAGGCACTCTCTCAGGAACTAGAGGATGAGGAGCCTTCTGTTGATCCTGACTATGAGCTGAGTGCAGTGGATACTGACAGTGAGGAGTATAACTCTCAAAATGACACAGAAAGTGACATTGATGTTTCAGGGAAGGTTGTGATCGATGACCTTAAAACGGTACAGAAATGTTCCTCAGACGGCATAGTGGAAGGTGGCATTTCAGGTACATCTGGTGCGCCGCCTTCAGTTTTATCACCACCTGTAAGCCTCCAGTGCCAGTATTCACTTTTTGCTTGTTTGTAATTTACTAAATAAAACATTCATCTTTATGTGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU483259 lncRNA downstream 737 63710572 ~ 63779992 (-) True G426613
TU483272 lncRNA downstream 11708 63741961 ~ 63769021 (-) True G426626
TU482711 lncRNA downstream 138954 63641447 ~ 63641775 (-) True G426112
TU482606 lncRNA downstream 189865 63590650 ~ 63590864 (-) True G426014
TU482559 lncRNA downstream 256617 63523913 ~ 63524112 (-) True G425968
TU483253 lncRNA upstream 15165 63798180 ~ 63802998 (-) True LOC110524304
TU483325 lncRNA upstream 44132 63827147 ~ 63831686 (-) True LOC110524305
TU483350 lncRNA upstream 166439 63949454 ~ 63951278 (-) False G426695
TU483348 lncRNA upstream 166952 63949967 ~ 63951278 (-) True G426695
TU483444 lncRNA upstream 307415 64090430 ~ 64090736 (-) True G426777
XM_021603822.2 mRNA downstream 36030 63703620 ~ 63744699 (-) True lingo3a
XM_021603817.2 mRNA downstream 245664 63502616 ~ 63535065 (-) True LOC110524294
XM_021603819.2 mRNA downstream 278362 63492427 ~ 63502367 (-) True LOC110524297
XM_021603813.2 mRNA downstream 289124 63462504 ~ 63491605 (-) True LOC110524292
XM_021603811.2 mRNA downstream 337300 63417964 ~ 63443429 (-) True LOC110524290
LOC110524304 mRNA upstream 15881 63798896 ~ 63803024 (-) False LOC110524304
XM_021603833.2 mRNA upstream 34865 63817880 ~ 63822170 (-) True LOC110524306
XM_021603832.2 mRNA upstream 45092 63828107 ~ 63839685 (-) False LOC110524305
XM_021603831.2 mRNA upstream 45092 63828107 ~ 63854232 (-) False LOC110524305
XM_021603830.2 mRNA upstream 45092 63828107 ~ 63854233 (-) False LOC110524305
TU482381 other downstream 477335 63300924 ~ 63303394 (-) True G425810
TU482441 other downstream 520260 63259648 ~ 63260469 (-) True LOC110524282
TU482212 other downstream 880226 62894659 ~ 62900503 (-) True G425647
TU482168 other downstream 930482 62850004 ~ 62850247 (-) True G425612
TU482117 other downstream 972607 62803938 ~ 62808122 (-) True LOC110524277
TU483573 other upstream 500953 64283968 ~ 64286359 (-) True LOC110522986
TU484037 other upstream 783666 64566681 ~ 64568380 (-) True G427287
TU484034 other upstream 918859 64701874 ~ 64706025 (-) False LOC110524330
TU484039 other upstream 942912 64725927 ~ 64732972 (-) True LOC110524330
TU484689 other upstream 1122030 64905045 ~ 64910998 (-) True LOC110524332

Expression Profile