RNA id: XM_021603825.2


Basic Information

Item Value
RNA id XM_021603825.2
length 1081
RNA type mRNA
GC content 0.48
exon number 7
gene id org
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63780729 ~ 63783015 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgctaactggttacCTAGTTATACACATGCCGCATTCAACGAGTTAGCAAGTCTGACATTTCTGAGTTTAGTTCCGAATAGCATATGAACTAGTCACATTTTGCCTACCGAATGTGACAGGCTATTGTCGGCCTATCTGATGTTGGCCCATACCTTTCTACAGATGCTGCCATAATTCATAATTTCGCTAATTAGTGATTCGATAAATGGTCACAGTTAGCCTAATTGTTTGTGTGGGGTGATTGGCTCATCTTCTGCTATTCCGGGGTTCATAAGAACACTGATCACATACCGCTGTTATCAGCTTCCTTCCAATCTATCGCCACATTGATCAGTATGACCTCTGAATGTAGCGTCGCCATCGAACAGGACAACGACGGTGTTGAGGACAAAGTTGTGGTgaagagagacagtgtgttaacCACTGTATTCTGTCGCCTGTCACAGTTTTGGCCTGTCAGACTAGCGATGCGTGCTCTCCGTGGGTTTTGGTGGCTGTTGGGTTTCTCCCCTTCAGATGAGGCTTTTGTTCCTCCAGAAGAGGATGACAATCCTAGTCCAGCCCGCCACTGTCTAGCAGGCCGCAAGCGTCTGCGTCGAGCCACACGCATCCTGTTGGCCATCCTGCCTCGCCGTCTGCAGAGCGCCCTGGGCTACCCTGTGTGCACCAGCATCGGCTGTGCTGTATCCCCAGaggtgCTTTGCTCCCCCACTAAGCTCTGTGGGAAAGGCAACAAGAGGAAGCAGGATGACATTGATGACGATGAGGAGCAGCAGACCTGGGTCGAGGCACTCTCTCAGGAACTAGAGGATGAGGAGCCTTCTGTTGATCCTGACTATGAGCTGAGTGCAGTGGATACTGACAGTGAGGAGTATAACTCTCAAAATGACACAGAAAGTGACATTGATGTTTCAGGGAAGGTTGTGATCGATGACCTTAAAACGAATGTTCCTCAGACGGCATAGTGGAAGGTGGCATTTCAGGTGCGCCGCCTTCAGTTTTATCACCACCTGTAAGCCTCCAGTGCCAGTATTCACTTTTTGCTTGTTTGTAATTTACTAAATAAAACATTCATCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483259 lncRNA downstream 743 63710572 ~ 63779992 (-) True G426613
TU483272 lncRNA downstream 11714 63741961 ~ 63769021 (-) True G426626
TU482711 lncRNA downstream 138960 63641447 ~ 63641775 (-) True G426112
TU482606 lncRNA downstream 189871 63590650 ~ 63590864 (-) True G426014
TU482559 lncRNA downstream 256623 63523913 ~ 63524112 (-) True G425968
TU483253 lncRNA upstream 15166 63798180 ~ 63802998 (-) True LOC110524304
TU483325 lncRNA upstream 44133 63827147 ~ 63831686 (-) True LOC110524305
TU483350 lncRNA upstream 166440 63949454 ~ 63951278 (-) False G426695
TU483348 lncRNA upstream 166953 63949967 ~ 63951278 (-) True G426695
TU483444 lncRNA upstream 307416 64090430 ~ 64090736 (-) True G426777
XM_021603822.2 mRNA downstream 36036 63703620 ~ 63744699 (-) True lingo3a
XM_021603817.2 mRNA downstream 245670 63502616 ~ 63535065 (-) True LOC110524294
XM_021603819.2 mRNA downstream 278368 63492427 ~ 63502367 (-) True LOC110524297
XM_021603813.2 mRNA downstream 289130 63462504 ~ 63491605 (-) True LOC110524292
XM_021603811.2 mRNA downstream 337306 63417964 ~ 63443429 (-) True LOC110524290
LOC110524304 mRNA upstream 15882 63798896 ~ 63803024 (-) False LOC110524304
XM_021603833.2 mRNA upstream 34866 63817880 ~ 63822170 (-) True LOC110524306
XM_021603832.2 mRNA upstream 45093 63828107 ~ 63839685 (-) False LOC110524305
XM_021603831.2 mRNA upstream 45093 63828107 ~ 63854232 (-) False LOC110524305
XM_021603830.2 mRNA upstream 45093 63828107 ~ 63854233 (-) False LOC110524305
TU482381 other downstream 477341 63300924 ~ 63303394 (-) True G425810
TU482441 other downstream 520266 63259648 ~ 63260469 (-) True LOC110524282
TU482212 other downstream 880232 62894659 ~ 62900503 (-) True G425647
TU482168 other downstream 930488 62850004 ~ 62850247 (-) True G425612
TU482117 other downstream 972613 62803938 ~ 62808122 (-) True LOC110524277
TU483573 other upstream 500954 64283968 ~ 64286359 (-) True LOC110522986
TU484037 other upstream 783667 64566681 ~ 64568380 (-) True G427287
TU484034 other upstream 918860 64701874 ~ 64706025 (-) False LOC110524330
TU484039 other upstream 942913 64725927 ~ 64732972 (-) True LOC110524330
TU484689 other upstream 1122031 64905045 ~ 64910998 (-) True LOC110524332

Expression Profile