RNA id: XM_021603833.2


Basic Information

Item Value
RNA id XM_021603833.2
length 3214
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC110524306
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63817880 ~ 63822170 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACCAAGGCCGTGAGGCACTTTTCAACCTGAGAAGTCTCAACAGCAGCATCTCATAGTCTGTCCATAGATCCTTTAATCCGTCAAGAACTCTTATTTAGCCAACACTTCTTCTGTATCTATCTGGCATGCAGCACATCCATATTCCATCCACTGTACTTAGTCCAATAACTGCTGAGAGAACTTTTTAAAGCCAACGTGTCTGTAATCAATCGTCAATTTGCAATCGCATCCTTAGAATTGCATCACAAATGGCTACTTTTATGAAGAACACTCCAATATCTGTTTGTGTATTGGGGGAGAGACAACTGGTGGGCTGAATTTGGCCCCCAAGTTTCCTAAGCATTTtcttgtatttattattttggaaatCTGTAAAGTATTCCTACGCAAGGTGTGAAGTTAGCATGTTTTAGTCAGATATgcctgtttgggcttcttgcagtcaatttgcagtctacaaatgattttgTAATTTGTGTATATTCTGTCTTGttgctgaatctagttgatcatCCCTGAAGAAGAACTGTATGTAAGAAATGGCAGGACACAGAAGCAATGATAGTgttgatatactgtaatagaccaGACATTACCTATGAAAGGCCTTTATAGAATTGTCATTACACGCATGGTTTTTCTGTCTCCTTCAAACATCCTCCCTTCCTTTTTGGAGGTGCTTAAATCGCCAGTCTTTTCTCACCCACAGGGAGGGCAGGTGTCTGTCTGCCACACACAAAACACTCCATTGTCTGTCTTGTGCTTCCTTTCCCTAGCCTTATCTCAACCCACCGTAGTATTCACTGTCCCTCCACATCTTACAACTTTCTCAAGGACACATCACATAGTATGAGCTGCGTATTTGGCAGCCTGTCCTCCTTAGCTGAAAGAGGGGCGGTACATAAAACTCATCTCCCTCGCTGACCTGACCCAAAACAAGTGTTCCATCCAGACGTGACTGGACAGACAGGGTTACCATGAGGCTATGGTGCATATTCTGCTTGATACTGCTGCTGCCCAGCACAATGGTCACTCTGCCACACCAGGGCAGACTGAGTGACAGCCTGCTAGGCCGGTGTCAGGAGGACCCCACGCCAGACCACCCAGGAACAGGGCCAGGAGACAACCGTTCAGTGGAGGTTGGAAAAGGTTTGGGAGAGAATGCCTTAACAGTGAAGGAGACCATAAACTCCCATCCCAGCGCTCCTCACCTACCTGGGGACACTCCATGTTTTGGAAGGATACCGTCTCATGGAGAGGTTGTTGAGGATATGTTTTCAGCACTTCGTGAAGGTTGGGGCCAGGAAAGTGACCTGAGAAAGGAGGATTTGACTCGATTTGGCGTTTGCTCACACTCTGCTGGTGCTCTAGTACCTGCCTTATCCACACTAGCTGAAGAAGCCAAAAAAGAGAAACATGGGCTACATGTTTGGCACCCAACCAAAGAGCTCATGGAGGGTGAAGTGGAGGGAGGGGGTCTTGTGTTGACCTTCCACCTCCCCCGGCCTCCCCTCTCCAATATCAAGCCCATACTGCTCCTTGCCTTTAGAAACCCCAGAACAGGAGCGCTCGGTGCCATCACTTTCACCAGTCACTCTCTGCAGCCTTACAAACAGACAGTATGTATTTCAGAAGGAACACAGTTCCTCATCCTAACAGGAAAGCAACCCGAGGGCAAAAGTCAACTGAGATGGAGATTCAATGTTGACACAAAAACACCAGAGACAGGACAAAAGCTGTCTGAACTACGAGGTATCCTGATTGGTGACGGAACAAGAAGTGATGTCAGTGTAATTCCCCTGATGCTTTTCTCAACAAATAGAGGAACTGATGAAAGAGTGACAGAAAAGCTGAGtccctcccctgctccctctgGGACCTACACGTTTCTGTGTGAGCTGCAGAAGTTCCTCAGTGACGTCATGCCACCACAGACGCAGTCACAACCATGGGCTGCTTCGGTCcctctgtactctctggactctCTTCCCCCCCTGTCCCTTGGGGTGTCGTCCAGTGAGACCCTCCTTGCCAGGCTGCTCAACTCCTCAGCTCCCACCCTGTTCTCTTTCCCCACACAGGGCTCTGTGCTCCAGGGGCATCGCGGGGAGCTGTCCCTGCAGCCCGCCCTACTGGAGGTGCTCAGGCAGAGGCTGGAGGAGGTTCTGGTCCAGATGAGGGTGGAGGAGGTGGGCAAAGCAGGAATGGACAGACTGAGGAGACTCCAGGAACTCAGTGTCCTTCCTAAAGAGGGCGAGGAAGCACCAGCAGgTGTTGGGAGCCCCAGTGAGACGCAGTACCGAGCCCTGCTTCTGCTGAAGGCCCTGCAGACAGTAGTGGGAGCCTGGGATGTGGAGAGGGGGCAGCGGGCCGCCAGAGCAGGCCAGAAGGGCCCAGGGAACCGGCACCTTTGTCGACTGCACAGTCTCACCGTGTCCCTAGAGAAATACCTGCTGTCTCCTCCTGAGGCCACCATCTACAACTGCCAGGGAGTCTGCAGCTTTCCCCTGACCAACGGGAATAACCATGCTATCCTGCTTAACAGCCAGATCCAGAGTGGCCTGGCCCTGGAGCGCTCGCCCTGCTGTGTGCCTGTGGACTATGAGGACCTCAAGGTGGTGGAGTTGGATGAGCATGGAACCAATATCTGCTACAAACCAAACATGGTGGCCAAGGAGTGTGGATGCCGCTGACTCCTCCATGTGGTGCAATGATTGGTATTAAAGGGCCAGGGCACCTGGGTTGTTGCAACATTACTCAATAAAAGTCAAGTAGAATTGCATGTTTTAAATCTTCTAGTgcatttattttgtttattgtaAATACATTATCACATCTAGTTGTCTACAATATTAGCTGATTTAATACACATTTTGTCACTCAGTTATGTAAATAGAAAACTCATTGGCTCAGTGCACAAATTGGATCTTTCAAGTACGATTTGTGCATTATCAATTTGCACCACATGATCGTATTGAAGGCTGAAAGAATATATTGATCATCAAATACGAGTTAGGAACCAGCTCATCTTATTGATTTCTGTATACCCTTTAAATATGAACATTTATGCATGATCAGATAAGACTGTATGGTGCATTTAAGATCATTGTGATGTaatgtatctttttttttttttttttttacagtagtaACATTTTAACTACAATATATCCTTATATTTCAACATAATAAACACACTTTGATTAGTCCTT

Function

GO: NA

KEGG:

id description
K04665 AMH; anti-mullerian hormone

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483253 lncRNA downstream 14882 63798180 ~ 63802998 (-) True LOC110524304
TU483259 lncRNA downstream 37888 63710572 ~ 63779992 (-) True G426613
TU483272 lncRNA downstream 48859 63741961 ~ 63769021 (-) True G426626
TU482711 lncRNA downstream 176105 63641447 ~ 63641775 (-) True G426112
TU482606 lncRNA downstream 227016 63590650 ~ 63590864 (-) True G426014
TU483325 lncRNA upstream 4977 63827147 ~ 63831686 (-) True LOC110524305
TU483350 lncRNA upstream 127284 63949454 ~ 63951278 (-) False G426695
TU483348 lncRNA upstream 127797 63949967 ~ 63951278 (-) True G426695
TU483444 lncRNA upstream 268260 64090430 ~ 64090736 (-) True G426777
TU483519 lncRNA upstream 379070 64201240 ~ 64205818 (-) True G426842
LOC110524304 mRNA downstream 14856 63798896 ~ 63803024 (-) False LOC110524304
XM_021603826.2 mRNA downstream 34865 63780733 ~ 63783015 (-) False org
XM_021603832.2 mRNA upstream 5937 63828107 ~ 63839685 (-) False LOC110524305
XM_021603831.2 mRNA upstream 5937 63828107 ~ 63854232 (-) False LOC110524305
XM_021603830.2 mRNA upstream 5937 63828107 ~ 63854233 (-) False LOC110524305
XM_021603829.2 mRNA upstream 5937 63828107 ~ 63854234 (-) False LOC110524305
XM_021603834.2 mRNA upstream 47176 63869346 ~ 63911602 (-) True LOC110524308
TU482381 other downstream 514486 63300924 ~ 63303394 (-) True G425810
TU482441 other downstream 557411 63259648 ~ 63260469 (-) True LOC110524282
TU482212 other downstream 917377 62894659 ~ 62900503 (-) True G425647
TU482168 other downstream 967633 62850004 ~ 62850247 (-) True G425612
TU482117 other downstream 1009758 62803938 ~ 62808122 (-) True LOC110524277
TU483573 other upstream 461798 64283968 ~ 64286359 (-) True LOC110522986
TU484037 other upstream 744511 64566681 ~ 64568380 (-) True G427287
TU484034 other upstream 879704 64701874 ~ 64706025 (-) False LOC110524330
TU484039 other upstream 903757 64725927 ~ 64732972 (-) True LOC110524330
TU484689 other upstream 1082875 64905045 ~ 64910998 (-) True LOC110524332

Expression Profile