RNA id: XM_021603832.2


Basic Information

Item Value
RNA id XM_021603832.2
length 5713
RNA type mRNA
GC content 0.55
exon number 19
gene id LOC110524305
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63827147 ~ 63854234 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCTTTTATACTCACAAAACGTCTTCTCTGTCCCACACACAATGTTGCAATGGTAGTTGCTCCATTTAAAGAAGGGTAACCTTGAACTGAACGAATGGCCCACGCTTCAAAGGTCTCCATCAGTTCATCTGTCCTTATTCTGTATGTGTATCAAATACCATGGTAAATAACAAACCCACGTGATATTTTCTGACAATGCGTACGGTAGCAGTACTCAGAACATGTTTAGTCGGCCATATCCCTGCAGGAAACAACTGCAACTGCTGGTATAGCCCTGCAGTGGACAGAGGAGATGTGGTACAGCGACAGCTTGAAAACTATTTTCATAGTCTCAAAAATCCTAAACTCAGGGAGGAGCAAGAAGCAGCTAGGCGTCGACAAGAAAagaacagtaaagacagtaaaaaCACCACCCCAACCAAGGCAAAGGAGCACAAGGATTCCTGCGGCGAGGATGAGCAACCGAGGCTATTGGCAGTCGTGAAGGCGTCACCCAAACCCCGCCGCGCCAAACTCCTCAGCAAAGGCCGCAAGCTGAGCGCTCGGAAGCGCGGGCGTCCCAAGAAGGCTGCCGTGACTGCAGCCGAACGCAAGAGCAAGAAGAGCCAGAGTGCCCTGGAGCTGCTGCACGCCaagaccatctctgcagcacccccTCAGGATGCATACAGGTCACCTCAAAGTCCCCTCTACCAGCTACCTCCCAAAGTTCAGCACTATGCGTCTGGGCAACTGCTGCTGGGCCCCACTCCTCCTGGCCTACAACAGCTTCTAGACAACATTAAAGTCCAGTACCTCCAGTTCATGACCTACATGAAGACACCTCAGTACCACAATCACCTGCAGCAAGTCCTGGAGCAGGAGAAGCTAAAACACAGCGAGCTCTCTGGGCAGGCGGAGCAGCTGCAGACTGTGTGTCAGACCCACAAAGAGAAGATCAAAGGCCTCTTCCACACCAAACTGGATGAGCTGGGAGTGAAGGCCCTAACTGTGGAGGACCTGCTGCAGGCCCAGAAGGAGATCTCCGCCCACAACCATCAGCTGAAGGAGCAGACCAagcagctggagagagacatgatcGAGCTGAGGGACCACAGCCTGCTCCTGTTGAAGTCTCGGTGTGAAGAGCTGAAGCTGGACTGGAGCTCTCTGTGTCTTGAGAGCCTGCTGAAGGAGAAGCAGGCCCTACGCAGACAGATCTCCGAAAAACAGCGGCACTGTCTCGAGTTACAGATCAGCATCGTGGAGCTGGAGAAGAGTCAGAGACAACAGGAGCTGCTCCAGCTCAAGTCCTACAGTCCCTGTGAGGATTCCCCTTACCGTAAGGGCCTCCCTCGCCCTACCCTGGACCACGACACCCCCAAACTGAGCCTGGTCGTGGCCGGCCTCAGCCCCGAACTGTCCATCAACGGCACCGCCTCGCCCTGCTTCGACAGGAGGGCCACCAAGGGAGAGCTCCTCTCCCGCTACCTGCCCATCTCGCCTGACGACGAGATTGTGCCCCCCACCCCGGACGCCCGGCACAGGCAGCTGGGTCACCCCCTCCCTGACTACACCCGCTTCTCCCCAGCCAAGATCGCCCTGCGCAGACACCTGAACCAGGACTCTAGTACTGCACACTTCAGAGGCTTGGGCTTCACTGGTCTCAGGGGGGATATGGGCGCCATCACCTCTCCACTAGGCGCTAAACTGAGCTGCCTGTCTCCCAACTCATCAGACAGTCAGCAGAACAACATACTCAGGAGTGCTGAGAGGGGGGGTAAGGAGAAGAGTCCAGCAGGGGGTCCGGGTGAAGCCATCACCAGCCTGCCCATCAGTATCCCCCTCAGCACAGTGCACCCCAGCAAACTCCCTGTTAGCATCCCCCTGGCCAGTGTGGTGCTGCCCAGCCGAGCAGAGAGACTGAGGAGCACACCGAGTCCTGTGTCCCAGACAGGCCAGACCAACGGGTACTCCTCTAGCTTAGGGCTGATGAACGGAGGCTCTCACTCTGAGGAACAGGACGGGgctgccccctcccctccccctcatgGTGCCCCTCCAATGGGACCAACACAAGGCCACAGCCCCCCCCTCAGCACCGGAGGGGTCCTCCAGTATGCTGACGGCACCCCCAGAATCCTCCCTGAGGACAGGGCCGAGCGCCAGGGCGAGTCTGACTCTGAGCCCCAGGACAGCGAGTCCAGACGCCGCAtgttcttctcttcttcctcttcatcgtcttcctcctcctctggggGCGCCGCTTCTCGCCTCCGCCTCGGCTCGGCCAGACAGAGCCAGCATCACCTAGGTAGCCACAGTaaccacaacaaccaccaccactcgCCGGGCTCCCAACACACAAACTCTCACGGCCATGGGTCTCAGGAGGAACGCAAGCGTGGGAGGAGGAAGCGAAGCTCAACGGGGGCTCAACCTGCCAGTGGCTCCCCAAAGAGGAAGTCCTTTCCTGGGCTCAGCTCCACCAATCACCCATCAGGATCCCCACTCAACATCAACACCATGGTGAACAACATTAACCAGCCTCTGGAGATCGCTGCCATCTCTTCCCCGGAGCAgtctggatgtagcccctgtggTCCAGACATGGACCAGCCCCCTGTATTGAAGCGAGAACGCCCTCTGGAGATGAATGGCTCAGGATGCTACTCCTCCGCACCCAGCTCTGATGATGACTCTGGCTACCCCGCGGACAGCTCCAGCTCAAGAATTGAAAGGAAGATTGCCACTATTTCCTTGGAGAGCAGAGATGGACCAGGCAGACCAGGGGACAGGGAGCGCGGAAGGAAGTCAGGaggcagcagcagtaacagcacAGGAAGTGAGgtctcctcttcatcttcctcctcatccaACAGCAAGTGGAAATCCACCTTCTCCCCCATCTCTGACCTCAAGCAGCCCCTGTCCGAGGTGAGGCAGGGGGGCTCCCCCTTTGGCACAGGGAGAGAGCCGCGGGGCCTGGGCACGGGTACGGACTCAGACTCTGATCACAAACCGCAGCAGCAGAGGAGGGGGTGCGAGGGGGCCGGGGGCGAGCCCTCAGGGTTTCAGGACATCCCCCttaaccccttccttagccaGGAGTCTGGGGGCCGGCCGGGGGCAGGGGCCCAGGGAGGAAGCAGCTCTGAGAGGCAGGCCATGCCCAAACAGAAGCCCCGGGGTGAGTGGGAGCTGAAGACATCCAGCAGCATGGGCAACAGCCAGAATCTCTTCATCTCTGCAGCCGTCAGCGGGGGTATCCTGAGCGGTAAGGTAGGGGGCAGCCCTGTATCTTCAGCCTCAGGGGCCTCTGTGGGACATTACCTGGGCCTTGGGGGCGCCTCTGTCCTCCAGTCCCTGTTCGGAACCCAGACGTCCGGAACCTCTGTGAGCGGGGCCCCGCGCCTGGTCAACGGACACTCTTCCCTGGGGAGCTTCTCCAGCGCTGGGCTGGCAGGCATGTTTCACCACGTGGTGCCCTCAGTGTCCTCCCATCAGTTTGGGGCTGCGCTGCCAGCCTCAGGAGGCCTCAGCTCTCTGCTCAGTCTGTCCTCCTCCCAGCAGCACCAACATCCTGCCCCCCAGTCAGGCTCCTCCTTCCTGGCCTCTgtatcctcctccctccccctctcccattccCAGCACAGCCGCACCCAAACAGTGCTGcacacccctccaccccccacgCTCTCCCTGCCCCCCCCACCACCATATCTCaacgtctcctcctcctcagtctcgTCCTCTGACCCCAGTCCCTCGTCTCGCTCTGAGgccttcccctcttctctccagcAACAGAGAGTACagtcctctctctcggtctcctcctcctctgcttctgtctcctcctcttcttcacctTCCTCTCGTAGCTTCACAGTGCACTACCCCCCTCATCTGCCCCCTCCAACCCAGGCCAGTAGCTCAGGAGGTGGGGTCAGCATGTGGAGGACTCTGGGCTTGCCTGCTTCCTACACGTCGTCCTCTCAGCACCCTGGCTCCCGGCCTAGATAGGGCATAGGGTGAGGGGCGGGTGGGGGATGTGGTAGGGGGGTGTGGGTCAATCAGAGGGATAAGAGGAAGAGACTGgtagggagagacacacagacaaccTGGTTTTCCTGTGCTTCCAAAGCTGCTATTCAGTTCTAACAAGGTAACTGAAGAATATCTACCTCAACCCAACGTAACCTATGCAAATGGACAGGTGTGGACCAATGGACAATACTATCTCACTCGTGCTCCTAAGCCTGCTAAACCGCCACTGTACTgggactcaacacacacacacacacacacacagagctgagcacacatacacacactgcttcGGCAACTCACGCTGACACATACTCGCAGCATGGCGTCCTGAGCAGAGTTGAGCGGTCACGGGGGTGTTTGTGTTGTGGGTTGAGGCTGATAGTAATCACTGGGTTGTGTTCATCCCATCCTTAATGAATTGGTATGCTGCCTACTCGTAACATTATAGTGACACATGAAACGCACTGTTTCCATGGCAGTAACTTGTCACCATGTAACGTGGTGCTAATAAGACTTACTAAATATACATAGTTATTTGTTAAAGACTCAATTCACACATTTGACTACAGAAGAAGTCAGTCAGCAGTGTAGTTTTACATATCACTGGTGCCGTTATATTAGTAAAGGCAGACAGTGTGTACAGTGGGAGATTCGTGTGGGTCTGTCATCCTAGTAGACAGCACTCTCCTCTTCTGTCATTATCTGACCACCGGGTGCTATGTTAGACCTCACCCTCCacgcacaccatcacacacacacgctagacCAGTCTAACCCAGCTCTGATCAGGACTAGGGACCATGCAGCTGTGCCTCACTGCATCTCTAGCACCCTGCTACCTAACCTTGAACCCTGATCATTTGTTCAGTCAATGAAATATAATTTGAACACATTAGCTTTTGGCTAAGTATAAAACAGGGGGAAGCTGTTTGTTCAAATGCACTGGGTAACATATCTGTGTACCCTGTGACAATGTCCCTGGTGCAGGGACAGCACTATAGTCAGCCGTCAGCCCAGAGTAAAAGGTTCTTAGTTATATTGGTGTAATTATGGTCCGTGTCAAGTCAAGGGATCATTCATGTGAATAACTTTTGTGTCTGGACATGAAATGGTAGGCACAGAGGTTCTCATTCACTTAAGTGCTGCCGGCTGAGCTGTGCGTCAACACATGCATGATGTGAACAGCAGAAGGACTGGAGGATAGAAAGCGGAAACAGGATTCAGTTACTGAGACAGTCCGTTTATAATCACTACTTATAGAGCCAGCTGGAGTGCTAGGGGCGTAGGGACCCGCAACGCAATGTGCATTCTTCACAAGTAGGAATCTCAACTACCCTTAATCTAAGCTTCTTTGTTAGGTTTTTATATCCCTGCCGAAACACTGATATGATGAAAATGCAGGTGTAATTTTGGGACTCaaatgttgtttgtgttgtattcaGGCAAGTCTCTGGAGTCATATCTCACTGAGTTCACAGGGTAGAAATGCTGTCTGTACGTGTCACCTTTTGTCCACTAACACTGTAGTGGCGCTTTCTGCAGCCACTTCAACCtgcacacactgatatacaaacaccgctcacacactgatatacaaacaccgctcacacactgatatacaaacaccgctcacacactgatacacaaacaccgctcacacactgatacacaaacaccgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483253 lncRNA downstream 25109 63798180 ~ 63802998 (-) True LOC110524304
TU483259 lncRNA downstream 48115 63710572 ~ 63779992 (-) True G426613
TU483272 lncRNA downstream 59086 63741961 ~ 63769021 (-) True G426626
TU482711 lncRNA downstream 186332 63641447 ~ 63641775 (-) True G426112
TU482606 lncRNA downstream 237243 63590650 ~ 63590864 (-) True G426014
TU483350 lncRNA upstream 109769 63949454 ~ 63951278 (-) False G426695
TU483348 lncRNA upstream 110282 63949967 ~ 63951278 (-) True G426695
TU483444 lncRNA upstream 250745 64090430 ~ 64090736 (-) True G426777
TU483519 lncRNA upstream 361555 64201240 ~ 64205818 (-) True G426842
TU483529 lncRNA upstream 389423 64229108 ~ 64231040 (-) True G426851
XM_021603833.2 mRNA downstream 5937 63817880 ~ 63822170 (-) True LOC110524306
LOC110524304 mRNA downstream 25083 63798896 ~ 63803024 (-) False LOC110524304
XM_021603824.2 mRNA downstream 45092 63780735 ~ 63783015 (-) False org
XM_036978053.1 mRNA downstream 45092 63780735 ~ 63783015 (-) False org
XM_036978054.1 mRNA downstream 45092 63780735 ~ 63783015 (-) True org
XM_021603834.2 mRNA upstream 29661 63869346 ~ 63911602 (-) True LOC110524308
XM_021603835.2 mRNA upstream 72766 63912451 ~ 63925585 (-) False fkbp8
XM_021603837.2 mRNA upstream 73894 63913579 ~ 63925585 (-) False fkbp8
XR_002473572.2 mRNA upstream 73895 63913580 ~ 63925585 (-) True fkbp8
XM_021603840.2 mRNA upstream 89546 63929231 ~ 64062283 (-) False ssbp4
TU482381 other downstream 524713 63300924 ~ 63303394 (-) True G425810
TU482441 other downstream 567638 63259648 ~ 63260469 (-) True LOC110524282
TU482212 other downstream 927604 62894659 ~ 62900503 (-) True G425647
TU482168 other downstream 977860 62850004 ~ 62850247 (-) True G425612
TU482117 other downstream 1019985 62803938 ~ 62808122 (-) True LOC110524277
TU483573 other upstream 444283 64283968 ~ 64286359 (-) True LOC110522986
TU484037 other upstream 726996 64566681 ~ 64568380 (-) True G427287
TU484034 other upstream 862189 64701874 ~ 64706025 (-) False LOC110524330
TU484039 other upstream 886242 64725927 ~ 64732972 (-) True LOC110524330
TU484689 other upstream 1065360 64905045 ~ 64910998 (-) True LOC110524332

Expression Profile