RNA id: TU483325


Basic Information

Item Value
RNA id TU483325
length 2806
lncRNA type sense_over
GC content 0.47
exon number 2
gene id LOC110524305
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63827147 ~ 63854234 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGGGGTGAGTGGGAGCTGAAGACATCCAGCAGCATGGGCAACAGCCAGAATCTCTTCATCTCTGCAGCCGTCAGCGGGGGTATCCTGAGCGGTAAGGTAGGGGGCAGCCCTGTATCTTCAGCCTCAGGGGCCTCTGTGGGACATTACCTGGGCCTTGGGGGCGCCTCTGTCCTCCAGTCCCTGTTCGGAACCCAGACGTCCGGAACCTCTGTGAGCGGGGCCCCGCGCCTGGTCAACGGACACTCTTCCCTGGGGAGCTTCTCCAGCGCTGGGCTGGCAGGTAACTGAAGAATATCTACCTCAACCCAACGTAACCTATGCAAATGGACAGGTGTGGACCAATGGACAATACTATCTCACTCGTGCTCCTAAGCCTGCTAAACCGCCACTGTACTgggactcaacacacacacacacacacacacagagctgagcacacatacacacactgcttcGGCAACTCACGCTGACACATACTCGCAGCATGGCGTCCTGAGCAGAGTTGAGCGGTCACGGGGGTGTTTGTGTTGTGGGTTGAGGCTGATAGTAATCACTGGGTTGTGTTCATCCCATCCTTAATGAATTGGTATGCTGCCTACTCGTAACATTATAGTGACACATGAAACGCACTGTTTCCATGGCAGTAACTTGTCACCATGTAACGTGGTGCTAATAAGACTTACTAAATATACATAGTTATTTGTTAAAGACTCAATTCACACATTTGACTACAGAAGAAGTCAGTCAGCAGTGTAGTTTTACATATCACTGGTGCCGTTATATTAGTAAAGGCAGACAGTGTGTACAGTGGGAGATTCGTGTGGGTCTGTCATCCTAGTAGACAGCACTCTCCTCTTCTGTCATTATCTGACCACCGGGTGCTATGTTAGACCTCACCCTCCacgcacaccatcacacacacacgctagacCAGTCTAACCCAGCTCTGATCAGGACTAGGGACCATGCAGCTGTGCCTCACTGCATCTCTAGCACCCTGCTACCTAACCTTGAACCCTGATCATTTGTTCAGTCAATGAAATATAATTTGAACACATTAGCTTTTGGCTAAGTATAAAACAGGGGGAAGCTGTTTGTTCAAATGCACTGGGTAACATATCTGTGTACCCTGTGACAATGTCCCTGGTGCAGGGACAGCACTATAGTCAGCCGTCAGCCCAGAGTAAAAGGTTCTTAGTTATATTGGTGTAATTATGGTCCGTGTCAAGTCAAGGGATCATTCATGTGAATAACTTTTGTGTCTGGACATGAAATGGTAGGCACAGAGGTTCTCATTCACTTAAGTGCTGCCGGCTGAGCTGTGCGTCAACACATGCATGATGTGAACAGCAGAAGGACTGGAGGATAGAAAGCGGAAACAGGATTCAGTTACTGAGACAGTCCGTTTATAATCACTACTTATAGAGCCAGCTGGAGTGCTAGGGGCGTAGGGACCCGCAACGCAATGTGCATTCTTCACAAGTAGGAATCTCAACTACCCTTAATCTAAGCTTCTTTGTTAGGTTTTTATATCCCTGCCGAAACACTGATATGATGAAAATGCAGGTGTAATTTTGGGACTCaaatgttgtttgtgttgtattcaGGCAAGTCTCTGGAGTCATATCTCACTGAGTTCACAGGGTAGAAATGCTGTCTGTACGTGTCACCTTTTGTCCACTAACACTGTAGTGGCGCTTTCTGCAGCCACTTCAACCtgcacacactgatatacaaacaccgctcacacactgatatacaaacaccgctcacacactgatatacaaacaccgctcacacactgatacacaaacaccgctcacacactgatacacaaacaccgctcacacactgatatacaaacaccgcgcacacactgatatacaaacaccgctcacacactgatacacaaacaccgctcacacactgatacacaaacaccgcgcacacactgatatacaaacaccgctcacacactgatatacaaacaccgctcacacactgatatacaaacaccgctcacacactgatatacaaacaccgctcacacactgatatacaaacaccgctcacacactgatacacaaacaccgctcacacactgatatacaaacaccgctcacacactgatatacaaacaccgctcacacactgatatacaaacaccgctcacacactgatatacaaacaccgctcacacactgatacacaaacaccgctcacacactgatacacaaacaccgctcacacactgatacacaaacaccgctcacacactgacatacaaacaccgctcacacactgatacacaaacaccgctcacacactgatacacaaacaccgctcacacactgacacacaaacaccgctcacacactgatacacaaacaccgctcacacactgatatacaaacaccgctcacacactgatatacaaacaccgctcacacactgatatacaaacaccgctcatacactgatatacaaacaccgctcatacactgatatacaaacaccgctcacacactgatatacaaacaccgctcacacactgatatacaaacaccgctcacacactgatatacaaacaccgctcacacactgatacacaaacaccgctcacacactgatatacaaacaccgctcacacactgatatacaaacaccgctcacacactgatatacaaacaccgctcacacactgatatacaaacaccgctcacacactgatatacaaacaccgctcacacactgatacacaaacaccgctcacacactgatacacaaacaccgctcacacactga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483253 lncRNA downstream 24149 63798180 ~ 63802998 (-) True LOC110524304
TU483259 lncRNA downstream 47155 63710572 ~ 63779992 (-) True G426613
TU483272 lncRNA downstream 58126 63741961 ~ 63769021 (-) True G426626
TU482711 lncRNA downstream 185372 63641447 ~ 63641775 (-) True G426112
TU482606 lncRNA downstream 236283 63590650 ~ 63590864 (-) True G426014
TU483350 lncRNA upstream 117768 63949454 ~ 63951278 (-) False G426695
TU483348 lncRNA upstream 118281 63949967 ~ 63951278 (-) True G426695
TU483444 lncRNA upstream 258744 64090430 ~ 64090736 (-) True G426777
TU483519 lncRNA upstream 369554 64201240 ~ 64205818 (-) True G426842
TU483529 lncRNA upstream 397422 64229108 ~ 64231040 (-) True G426851
XM_021603833.2 mRNA downstream 4977 63817880 ~ 63822170 (-) True LOC110524306
LOC110524304 mRNA downstream 24123 63798896 ~ 63803024 (-) False LOC110524304
XM_021603826.2 mRNA downstream 44132 63780733 ~ 63783015 (-) False org
XM_021603834.2 mRNA upstream 37660 63869346 ~ 63911602 (-) True LOC110524308
XM_021603835.2 mRNA upstream 80765 63912451 ~ 63925585 (-) False fkbp8
XM_021603837.2 mRNA upstream 81893 63913579 ~ 63925585 (-) False fkbp8
XR_002473572.2 mRNA upstream 81894 63913580 ~ 63925585 (-) True fkbp8
XM_021603840.2 mRNA upstream 97545 63929231 ~ 64062283 (-) False ssbp4
TU482381 other downstream 523753 63300924 ~ 63303394 (-) True G425810
TU482441 other downstream 566678 63259648 ~ 63260469 (-) True LOC110524282
TU482212 other downstream 926644 62894659 ~ 62900503 (-) True G425647
TU482168 other downstream 976900 62850004 ~ 62850247 (-) True G425612
TU482117 other downstream 1019025 62803938 ~ 62808122 (-) True LOC110524277
TU483573 other upstream 452282 64283968 ~ 64286359 (-) True LOC110522986
TU484037 other upstream 734995 64566681 ~ 64568380 (-) True G427287
TU484034 other upstream 870188 64701874 ~ 64706025 (-) False LOC110524330
TU484039 other upstream 894241 64725927 ~ 64732972 (-) True LOC110524330
TU484689 other upstream 1073359 64905045 ~ 64910998 (-) True LOC110524332

Expression Profile