RNA id: XM_021603835.2


Basic Information

Item Value
RNA id XM_021603835.2
length 2196
RNA type mRNA
GC content 0.45
exon number 9
gene id fkbp8
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63912451 ~ 63925585 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAGTCTTCCTACGCCTCCTAAATTAGGTTATTGGTTTAGGCCCAAGGTGAACTCAGGAAGAGTCTGCCATCGCATGACAGAAGCATCAAGTAAAGCTAGCTATTGTCACAAACTCTTCGATCAGGCATTCTGTCCTTTTATCAAGCATATCATAAGATGACTGACAAAGAGGGGGTGACTGGTGCAGGTGATAACCCACAGATGATTCTAACAGGGAAGAAGTCAGGGAAAGCATCGCTGCTGGACAGTGGGGAAGACTTTGAGATGTTGGATGATGATGAAATTGATGATGACCCTCCTCCTTTGGAAGATGCTGGGGGTGGGAAGAATACTAAAAAAGAGCCTGCAGAGGACCAAGATGCCAGCCCTTCATCTCTAATAGATGAGTGGATGGATATACTAGGTAATGGCCAGCTAAGGAAGAAAGTTCTGCGGGCAGGGAATGGGCCAGACAGCAGGCCCACAAAAGGCCAGAATGTCGTGATTCACCTGAAGACTTCACTGGCTGATGGGACTCTTATAGAAGAGCAACCGGAGCTGTCTTTCACTCTGGGAGATGGTGACGTCATCCAGGCTCTGGATCTCACAGTGCAGCTCATGGAAATGGGGGAGACGGCCCTCGTCCAAGCCGACGCTAAATATGCATATGGTGCCCTGGGGAGCCTTGCCCCTGAGGTGCTTCCCAGTGCTGATCTGGCCCTGGAGGTACAGCTGCTGGATGCCACTGAGGCCCCCGACCTTGAGCTCCTCTCCCCCCAGGAGAGGGTTGCCCTTGCTGggcagaagagggagagggggaatgtCTACTACCAGAGAGGAGACTACGCCTTCGCTGTAAACTCTTATGGCTTTGCCCTGCAGATCACCGAGTCCAGCTCTAAAGTGGACATTAGcccggaggaagaggaggagctgaTGGACATTAAGGTGAAGTGTCTAAACAACATGGCAGCTGCCCAGCTCAAGTTGGATCACTACGAAGCAGCACTACGGTCCTGTGTTTCAGTGCTGGCCCACCAGCCAGACAACATCAAAGCCCTATTCCGCAAAGGCAAGGTATTGGCCTTGCAAGGAGAATATGCTGACGCTATAAGGAATTTGAAGATGGCCCTGAAGTTGGAACCAAGCAACAAGACCATCCACTCAGAACTCTCCAAGCTGGTGAAGAAGCACTCTGAGCAGAAAGATGCCGAGCAGGCCATGTACAAGAAGATGCTAGGCAACCCAGGCAGCGGTAGCATGCAGAAACACCAGGCCAGGTCATCATGGGGTGTCAGCTGGAAATGGCTGTTCGGTGCCACGGCTGTAGCCATCGGAGGTGTCGCCTTGTCAGTTGTCATAGCTGCCAGAAATTAGATAAGACAAACACTTTTTCTGGTGATTGCCTGCTCCCTCCACAGTGGGACCTCACAAAAAGCAACTGGATATCTGGCAGTGCCTGTTGgaactggtaaaaaaaaaagtgggaaGGAAATGGCTTTATCTGCCACAACCTTTAGTGTGACGGTCCATACGTTTCTCACACTGTTCTGTCAATGCTTGGGAGAATTATGACAAATACTATACAATAAACATTTGTATATGAAAAGTACTTACCACTTTTTAAATGTGCATATGGCCATTTATTTCCAGAGACAAATTGTTAATTGCTCCTATATGGTAATGATTCTAAATATAAATTGAGCACTCTGAAATGAGAATTCTATGAATGATCGGTCAAAGTTATTTAAAATTAGCGAATGTGATATGGCCCTATATTTTTAAAGCATATGATTGTGCAATTATTTGCATTCTGATTTTGCTCTTTTACTGGGACAGTGCCAATGATGGGTATGAGATGAATCTAGATGCTGTATTATCTGGCCCTGGGATCCACACAGTCTTGGTCGACGGAAACTGTCACATTCTTTTAAATGGCAGAAAGAAGAAACTCTAAGTCAATGGAGAATACCTCACTTTGATAATTCTGAGAAATGTTGAAGGGTGTACCTTCTAAATCCAATTTTAGGTCAGTTTAACAAAACATCTATTTGATTATCTATCATTTTGTTAAATTCAGGATACTTGTTATATTCATGATATGTGTTATATTCATGATACTTCTCACCAAATGAGAAGACATTGTTTGAGATTCTCACATTCCTTTATTTgttaattttgtatttatttcaataAAAGTTTGTCAATTCTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483325 lncRNA downstream 80765 63827147 ~ 63831686 (-) True LOC110524305
TU483253 lncRNA downstream 109453 63798180 ~ 63802998 (-) True LOC110524304
TU483259 lncRNA downstream 132459 63710572 ~ 63779992 (-) True G426613
TU483272 lncRNA downstream 143430 63741961 ~ 63769021 (-) True G426626
TU482711 lncRNA downstream 270676 63641447 ~ 63641775 (-) True G426112
TU483350 lncRNA upstream 23869 63949454 ~ 63951278 (-) False G426695
TU483348 lncRNA upstream 24382 63949967 ~ 63951278 (-) True G426695
TU483444 lncRNA upstream 164845 64090430 ~ 64090736 (-) True G426777
TU483519 lncRNA upstream 275655 64201240 ~ 64205818 (-) True G426842
TU483529 lncRNA upstream 303523 64229108 ~ 64231040 (-) True G426851
XM_021603834.2 mRNA downstream 849 63869346 ~ 63911602 (-) True LOC110524308
XM_021603829.2 mRNA downstream 58217 63828107 ~ 63854234 (-) False LOC110524305
XM_021603830.2 mRNA downstream 58218 63828107 ~ 63854233 (-) False LOC110524305
XM_021603831.2 mRNA downstream 58219 63828107 ~ 63854232 (-) False LOC110524305
XM_021603832.2 mRNA downstream 72766 63828107 ~ 63839685 (-) False LOC110524305
XM_021603840.2 mRNA upstream 3646 63929231 ~ 64062283 (-) False ssbp4
XM_036978055.1 mRNA upstream 6723 63932308 ~ 64062177 (-) True ssbp4
XM_036978056.1 mRNA upstream 206992 64132577 ~ 64143786 (-) True tmem59l
LOC110522984 mRNA upstream 232828 64158413 ~ 64169374 (-) True LOC110522984
XM_021603850.2 mRNA upstream 317934 64243519 ~ 64246283 (-) False LOC110524318
TU482381 other downstream 609057 63300924 ~ 63303394 (-) True G425810
TU482441 other downstream 651982 63259648 ~ 63260469 (-) True LOC110524282
TU482212 other downstream 1011948 62894659 ~ 62900503 (-) True G425647
TU482168 other downstream 1062204 62850004 ~ 62850247 (-) True G425612
TU482117 other downstream 1104329 62803938 ~ 62808122 (-) True LOC110524277
TU483573 other upstream 358383 64283968 ~ 64286359 (-) True LOC110522986
TU484037 other upstream 641096 64566681 ~ 64568380 (-) True G427287
TU484034 other upstream 776289 64701874 ~ 64706025 (-) False LOC110524330
TU484039 other upstream 800342 64725927 ~ 64732972 (-) True LOC110524330
TU484689 other upstream 979460 64905045 ~ 64910998 (-) True LOC110524332

Expression Profile