RNA id: XM_021603843.2


Basic Information

Item Value
RNA id XM_021603843.2
length 3525
RNA type mRNA
GC content 0.46
exon number 7
gene id crlf1b
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64146096 ~ 64158106 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcttttcttttgggGGGGAATGGACATGACAAAATAAAGAGCAATAATGACTTGAGACTGTGTGGGAAGACAAGGGAGGGGCTTATAAAGTATCAACTTGAATGTTGTAGCTGTTGAGGCGTGCACCAATGCAAACCCTCACTAAACTAAAGGCAAACCTTAAGTTACTTTCATACAAGCACTGTTTATCAGCTTATCCGCACTTACATACGGAGCTCCGACGTTCGATGTAAAACGTAGTTCCTTCGTTAGAATCAGACTGTTGATTCAACGTTGTTGGAGAGGTGGGTTTCAACTCCTTCGTTTTCTCCCTTAGGAGTGTGGTAAGAGGGAAAGAAAGGACAAGAGAGCGAAAGGACACGAAAAAGGCAAAAAGGCTATCTGAAACATGATCTACATGTTGTGTCTCATACTGTTTGTTCCACGTGTGTTCTCCTCATCGACACAGGTGGCTGTAATCTTCCCCCAAGACCCAGCATTGTGGATGGGCTCCAGCCTAACGGCCACGTGCACAGTGAGCCCCGAGCGGGGGCTGCATGCCAACACTATGTACTGGACCCTTAACGGGAAGAGACTCCCAAGTAGCACCTACGGCCTGCTGAGCACCAACGGCCTCAGTGTCACCTTGCACCGCCTCAACGGCTCCCAGCAGCAGTCTGGGGACAACCTGGTGTGTCACAGCAGAGACGGACATGTCCTGGCTGGCTCCTGTCTGTACGTGGGCATGCCCCCGGAGAAGCCGGTCAACCTAACCTGCTGGTCCCGAAACACAAAGGACCTGAGCTGCAAGTGGACCCCCGGTGGTCGGGGTGAAACCTTCATCAAAACCAAATACACCCTCAAGTACAAATTGAGGTGGTAcgggcgagagagagaatgtgaggacTACAGCACGGGGAAACGCTACACGTGTTACATCCCCCGGGACTTGGCCCTCTTTACTCCCTACGAGATCTGGGTGGAGGCGTCCAATCAGCTGGGGACTGCCACCTCTGATGTCATCACTCTGGATATTCTGGATGTGGTGACTACAGACCCTCCAGACAACGTCCATGTGAGTCGTGTGGGGGAGCTTGAGGACCAGCTAACAGTGCGTTGGGGCAGCCCTCCGGCACTTAAAGACTTCCTCTTCCAGGCCAAATACCAGATACGTTACCGACTGGAAGACAGCACTGAATGGAAGTTGGTGGATGATGTAGGTAACCAGACATCGTGCCGGCTAGCAGGGCTAAGGGAAGGGACAGTATACTTTGTCCAGGTGAGGTGTAACCCAGTGGGGATCTACGGCTCCAGGAAGGCTGGGATCTGGAGTGACTGGAGCCACCCTACAGCTGCCTCCACGCCCCACAGTGAGCCGCTGCAGAGTGGGTCATGTGACCCCAAGTCGGGCGAGCAGAACTCCACCCTGCGACGGGAGCTCAAGCAGTTCTTTGGCTGGGTCCGCAAACACGCATGCGGCTGCAGCGGCATGTCAATCAAACTCTACGACCAGTGGCGGGTGTGGCTGCAGAAATCTCATAAAACACGCAACCATGTAGGTAAGAATAATATCCCCTTTATTTCTGTTCCAGCTCAGCATAGGCTTCACGGTTATGCACCATGATTATGTACTACTAGGCTACTGTAGCTCCTTATCACAACAACACCCTCTGTTGTCAATGTGTTGAACTCTGCATACACCCCTATTCTCTGACCCCCTTTGTCCTGAATTGTACTTTTGTGTTTTGCGATGTGGTCAGCGTTTTGGAAGCACACAGAACCATTTCCCTAGAACTGGTTAGACTTTCTGAAGTCTCAGTCTGATGTTTTATGTTCAGGTATGTGTGCGGTTTCCACTTTATTGGCCCAGAGTACAGCATAAAGTTGATATCCGCTCAGTTCTCCAAGTCATGAAATCTAATTTTATTACATATTTTAATGGCATAGACTTATGATCTTCAGTCGATTGCCACAACAAAGGGAAATGAGCATGTAAATATAATTAACAACCACTATAATGTGTTCCTTTtgtgttttgtctctctgtgACGTGAGGAGCTTGTTTCACAACATAACTGAGCCCAAATGGCAGCCAGGAGGACTGAGCTCACCGCTAAGCCACATCCTCTGTTCGCCCCCTGAACCCAATCGCTGGTTGTTATGCTACTGAGGACAAGGGAACTGCCCGAGTCTTTTATCTCACCTGATTTGTGTGGTGTCCCtgaataatgtctgtgtttaACTGCTCTGACAGGCGTATATTGATTAACCTCAGAGAAAAAAGGAGCAGTTTAACTGGCTATTACCAATACGCAATTGGTGTCAGTATGATAATGATATGAATTTCCATCCTTTGTCTATTTAATTATCCCAATATTAAGCATATGTTTTCTCTTTCAGATTCTACAATGCGATAAATCCTAACACATGCTAAACATCATTGAAGTATTTTAACAACATTCACAACAGCAACTGAGAAACTGTCTTAGAAGGCCACTTTGAGGCCTGTGGGTAAAAGCCATCCAACACTCTGGATATTCCAGCATTTGGTCACACACAGCAACTTTTTTTTGTAGGAATCCATATGGAACAGAAAAAGAACTGATGCGAGACGCCAGCGTTACACTACTGTCTGCAGCCCAGGATTCAAATAGAGTGGAATCACTCTTTGCTCAGATACCAATACCTATCTCGAAGAACTGCTCGATCCCCTcctctccacacacactctctcttacaTACACATCTCCGGGGAGTGGCAAAGAGGAGAGCCTTTCTCTGATCACTGAGTGGGAGCATGGAAACGTTTCTTAATGTAGCATTAGTACATGTTTGACTCAGATGGCCATAAATCATCTTACTGACTACCATCAGATCAGACACGTAGTGGCCAGCTTCACAGACTTTTACCAGAGAGACAAGGGCATTACGCAATCCTCCTGGAATGTCATATACAGTACAAAGAACTTCACTAATTCAGCTCCTGTTCAGAAAACTCAATCACAGAACATTTGTCAGCATTCtagaagatgaatgtactttcaTAATGTATTTCCATTCTAACCACTTTAATAGCCACACAGTTGTCTAAGCTATGTGTCAATGCAATTTAATTGTATGGGCCTTTTACTGGCAAAAACATGGTTGGTATGCTAGCAAATGCTAACACACCATTTTGTAGATTGGCTTTGTTGCAGTAATAGCAATTGAGCTTGATATATTTTTGGATTGAAGTCAGGTTTGTGGGTCACCATGACCAAAGCCCATTCTGCAGTTTGTTGTTAATATGGAAGTGTTCTCTTGTCCTGAGGGTTTGCACCACTCTGGATTCCTCTTATTGAAATGAAGTGGCATAAAGTTTAACTGTATatactgtgtctgtgtgactgtgcgGATTAagacatttttatatttttttatctgcATATTTAAGAGATCCTAAGTAATATGTCTCTCATTAAGTTATGTTCAATTATCAATAATAATTATGAATATGTCATAGTTTGACCATTTTTGTCTATAAAACAATAAAAGAATGACACTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483011 lncRNA upstream 21500 64124210 ~ 64124596 (+) True G426395
TU482995 lncRNA upstream 52221 64093636 ~ 64093875 (+) True G426380
TU482955 lncRNA upstream 59355 64038367 ~ 64086741 (+) True G426340
TU482898 lncRNA upstream 202913 63940530 ~ 63943183 (+) True G426287
TU482894 lncRNA upstream 213487 63929266 ~ 63932609 (+) True G426283
TU483069 lncRNA downstream 52064 64210170 ~ 64210975 (+) False G426441
TU483070 lncRNA downstream 52064 64210170 ~ 64214053 (+) False G426441
TU483071 lncRNA downstream 52064 64210170 ~ 64214053 (+) True G426441
TU483083 lncRNA downstream 83838 64241944 ~ 64242197 (+) True G426453
TU483088 lncRNA downstream 92036 64250142 ~ 64250504 (+) True G426458
XR_002473571.2 mRNA upstream 328096 63816548 ~ 63818000 (+) False LOC110524307
XM_021603827.2 mRNA upstream 347429 63789124 ~ 63798667 (+) False peak3
XM_021603821.2 mRNA upstream 461248 63676409 ~ 63684848 (+) False nfil3-4
XM_021601330.2 mRNA upstream 474092 63670201 ~ 63672004 (+) True si:dkey-172o19.2
XM_021603820.2 mRNA upstream 508917 63613897 ~ 63637179 (+) True onecut3a
XM_036978059.1 mRNA downstream 18949 64177055 ~ 64183138 (+) False sac3d1
XM_036978060.1 mRNA downstream 18949 64177055 ~ 64183138 (+) False sac3d1
XM_036978061.1 mRNA downstream 20275 64178381 ~ 64183138 (+) False sac3d1
XM_021603848.2 mRNA downstream 21414 64179520 ~ 64183138 (+) False sac3d1
XM_036978062.1 mRNA downstream 26341 64184447 ~ 64237088 (+) True LOC110524317
TU482675 other upstream 461857 63676414 ~ 63684239 (+) True nfil3-4
TU481721 other upstream 1094566 63045090 ~ 63051530 (+) True G425224
TU480579 other upstream 1839159 62283152 ~ 62306937 (+) False LOC110524265
TU480458 other upstream 2040224 62105523 ~ 62105872 (+) True G424079
TU480287 other upstream 2424072 61721537 ~ 61722024 (+) True G423922
TU483050 other downstream 18922 64177028 ~ 64179386 (+) False sac3d1
TU483051 other downstream 18922 64177028 ~ 64179386 (+) False sac3d1
TU483052 other downstream 18922 64177028 ~ 64179386 (+) True sac3d1
TU483060 other downstream 85496 64243602 ~ 64244529 (+) True LOC110522985
TU484247 other downstream 833995 64992101 ~ 64997138 (+) True G427476

Expression Profile