RNA id: XM_036978060.1


Basic Information

Item Value
RNA id XM_036978060.1
length 2326
RNA type mRNA
GC content 0.51
exon number 11
gene id sac3d1
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64177028 ~ 64183138 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTCACTTGAAAGAAAAATGGCGTCAAGAATCGCCAACTGTTCCTAAAAGTCAGAAACCTACACTTGGAGATTCAGAAAGTTCCAAAGCTGTGAGTGAAAACAGCGAGAACAACAACAGTGGAACTGTTGAAAAGGCACCTCTCGCCAGGAACAATTTCCTCACCAATGAGTCCACCTTCGCCTCCACCAAGGCCTGCCCCACCTTAACCAGCAATGATGTCCAGTGTCCTTGAGCCTTCACAATTTGGAACAAGTATTCTGCAGTCCACAATCTTAATGGTCACTGTCTTCGCCCAGACATTGATGTATCTGCCATTTTAAAGACAAGACAGTCTTACCAGCAGTAGAACCTGAAAGGAACAATGAACATGAAAAGAGACTCCCAAGAGATGCAGATATTCTTGTTGGCCTACCTCACAGCAAAGATGGCGAATAATAGCCAGAAATttgaggtgggggtggaggggtgtaTTTTATCAgtgatggaggaagaggagcagctATGTAAGGAAGACCGTGAGAAGAACAAGCAGCTTGATGACCAGCTCGATTTACAGGTCAGAGCGCTAACTCCTGTGGCTGATGCTGTCAAGCAGTTCACAGAGAAATTACAAGCCTTTTGCCACCGCAGTCGACACCCACGTCATGAGCTGCCAGTGAAGAACTTCTTCATTGAGGGGGACAGAATTATGTTTCTGGGATTTCCTTCTTCACGGGGGTCTTTCAGAGTTGGTGGAGCTGTCATCGCTGGTCAGTCACCAGACCGTTCAGATTCAGCAGTTCTTGGAGGAGCTTGGCTTGACCAAAAATTGCCCCAAACAGTGAAGCAGCATTGGAGAACGTTGTATAGCATTTCCCACTCCAGAAGGAGAGGACAGCCCGTGGAAAGGGATTTTAGGCAACACCACAACCAGGGGGTATGGCGAGAAGtgcaagaggagaggaggcaggagtCCATCCCCAGGGGTGTCTGCCTGTCTATGTGCCCTATCCGCGAGCTGCAGGACAGGGAGGCCCAGAACTTACTGCACCGATTTGAGGTGTTGTCGGGTACTGAGCGGGAACGCTGGCCCAGGGCTGACCCCTCAGGTGTGGTAAAGGAGTATGCTAGACCTGCAGCAGGGAAGGACTCCACTCGACCTAGTGACCTGCGACCACCAGCTGTGCTGCTAAAGACTGTGTTCTACCTCGTCGACAACATCGCTGCCTCCCCCACACTGCGTCCATGGACCGAGGTGTATGATTTTGTCTTTGACCGGCTGCGCAGTGTGAGACAGGATATGATCATCCAGAGGGTGTCTGGTGCTGACTGTGTGGCCGTGCTGGAGAGGACAGTCCGCTTCCTGATCTACGCCTCCTACCGGCTGTGTGGGGAGCCCCTGCGCCTCTACGACCCCCGCATCAATGATACCCACCTGCAGGAAAGCCTCAGCTGGCTGCTGGAATGCTACACCAGTGGAAAGCACCCCAACCAGGAGGAGTTCCAGGCTCTCGGTCTCCTCTACAACCTGGGTTCAAGCCGTGCCACACAGCACACCATGGAGCTGCCAGAGCGGATACGCTCCTCCCCTGTCATGCATCTGGCCCTGTCAGTGAGCCGGGCCTTCATGGAACGCAACCCTGTACGACTCCTCCGATTGGCCCACAGTCTGGACTTCCTGCAGAGCTGTGCCCTGCACCGGCACCTAGAGACCTGTCGCAGAGACCTGCTGCTGATCTACAGCCACGGACACAGCAGCAAGAACTGCCGCTTCCCCCTCCACAAGCTGGCCCACATCCTGGCCCTGGATGTCCCCCTCACCAACCAGCTGTGCCAGGCCCATGGGGTGGAAGTCCGTGGGGACTATGTGGTCTTCTCCAAGACCTCCTTCACTGAGCCAGAGGCTGGGAAGCTACAGTGTGCACACTTTCATGATCTGGTGGACAGGAAGCAGAGGGATCTCACTGTTGGTAGCATCATTCATGGCTGCACTTGATATGACCAGACATGGACATTGGATAAACTGCGGCCTGCCTGCTCCAAGAAGACTGAGATGCACTTGATTTTATAGATTTTAAAGTTTTCGAAATAAACTTGTTTTAAAGTGATTTGTGAATATTCCCTTAACATCGACACCTGTTACATTTACACATAAAAATGTTGTGATTATAAAGTTGCCCTTTTGGACAAATCAAACATTTGATTATGATAGATCAGCGATCACACAAGAAATGTATGCCATATAGAGAACCACATGAATTaccatgttttatatactgtatctataattgTTTTTGACTTCTGCTGCCTTTGGTTTTAAAATAAAGCATTTATTTTTTGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483011 lncRNA upstream 52459 64124210 ~ 64124596 (+) True G426395
TU482995 lncRNA upstream 83180 64093636 ~ 64093875 (+) True G426380
TU482955 lncRNA upstream 90314 64038367 ~ 64086741 (+) True G426340
TU482898 lncRNA upstream 233872 63940530 ~ 63943183 (+) True G426287
TU482894 lncRNA upstream 244446 63929266 ~ 63932609 (+) True G426283
TU483069 lncRNA downstream 27032 64210170 ~ 64210975 (+) False G426441
TU483070 lncRNA downstream 27032 64210170 ~ 64214053 (+) False G426441
TU483071 lncRNA downstream 27032 64210170 ~ 64214053 (+) True G426441
TU483083 lncRNA downstream 58806 64241944 ~ 64242197 (+) True G426453
TU483088 lncRNA downstream 67004 64250142 ~ 64250504 (+) True G426458
XM_021603842.2 mRNA upstream 18949 64146096 ~ 64158106 (+) False crlf1b
XM_036978062.1 mRNA downstream 1309 64184447 ~ 64237088 (+) True LOC110524317
LOC110522985 mRNA downstream 60015 64243153 ~ 64244790 (+) False LOC110522985
XM_036978064.1 mRNA downstream 64359 64247497 ~ 64275958 (+) False shc2
XM_021603853.2 mRNA downstream 64360 64247498 ~ 64275958 (+) False shc2
XM_021603852.2 mRNA downstream 64363 64247501 ~ 64275956 (+) False shc2
TU482675 other upstream 492816 63676414 ~ 63684239 (+) True nfil3-4
TU481721 other upstream 1125525 63045090 ~ 63051530 (+) True G425224
TU480579 other upstream 1870118 62283152 ~ 62306937 (+) False LOC110524265
TU480458 other upstream 2071183 62105523 ~ 62105872 (+) True G424079
TU480287 other upstream 2455031 61721537 ~ 61722024 (+) True G423922
TU483060 other downstream 60464 64243602 ~ 64244529 (+) True LOC110522985
TU484247 other downstream 808963 64992101 ~ 64997138 (+) True G427476
TU484227 other downstream 841577 65024715 ~ 65028702 (+) False LOC110524338
TU484228 other downstream 841577 65024715 ~ 65028702 (+) False LOC110524338
TU484229 other downstream 841577 65024715 ~ 65028702 (+) False LOC110524338

Expression Profile