RNA id: XM_036978062.1


Basic Information

Item Value
RNA id XM_036978062.1
length 7037
RNA type mRNA
GC content 0.53
exon number 43
gene id LOC110524317
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64184447 ~ 64237088 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGAAAAAGCTTGGGAACCCCAGAGCTAGGCTATAGGAGCTGTTCTGACTCGAACCAGCCGTGACAAAAGCTTTGAAACGTCAAGGAGGCGAGGAGGCAAGGTTGGAGAAGAAAGGGACAACACCAAGGCTCTGGAAATAAATGTATAAACATGATCTATTTTCTATCGTGCTACATTTCAGGGGATGGGAGGACACTAATAATCTGGAATGCTGTTATATGAGAGAACGAAACTGAGGCGGGTGAATCAGGCACGCAAAAAGAGGACTGTCTATGTGCCTTGAGCTCTGACGGAAAAAGCCAGTTGCCCCGAAACGGGATTTCTCAAAGTGGGATGCTGATAACATGATCCTTGCTTGCCGATTCGAGACAGAAGTTGGCGCTCACACATTAGTGCCTCAATGAATAGGCTACGTTAGAATGAGAGGATGGTCGAAGCTACTGTACATTTGAAGCGTTGAGTATCTGAAGTCTGAACTTTATAACTCTGAGCGACTTTAGAACTCTCGTCACAGCAAACTGGGGTAATATTGAGAATGTGGAGGTCCTGCTGGACAGCGTGTATCTCGTGGACTTTATTCATCTGCATCGTCAGAAGTTATGCACAAGAAAGACAGGGTTACCTGATTGCTGCTCCCTCAGTTTTCCGCGCTGGCGTGGAGGAGGCCCTGAGCATTACCATCTTCAATGCTGTGGAGGAGACGCATGTCCAAGTCCAGCTCTCTGTGAAGGGTGAGACGGTGGCACACAGCCATGGCACTGTGCTAGACAAAGGTACAATCAAATTAAAGGTCCCTCCTGGTCTGAGAGGTCAGGCCCATCTGAAGGTGTGGGGGAATCGCCACATTACTGAGGGGGGATATATCTTCCACAACTACACCACTGTCACTGTGGACAGCAAGGGCACAGCCGTCTTCATCCAGACTGATAAGCCAGTCTACAAGCCCAAACACAAAGTGCTCATCAACGTGTACTCTGTCACTCCGGATCTGAGGCCGGCCAATGACAAGATTGAAGCCTACGTTGTGGACCCAAGAGGATCGCGGATGGTCCAGTGGAAAGGGCTTAAACCCCTCTGCTGCGGGGTCGTCAACATGAGTTTCCCTCTCTCAGACCAGCCTGTGTTTGGAGAGTGGTTCATCTTTGTAGAGATGCAGGGACACACCTACAACAAGTCCTTTGAAGTGCAGAAGTATATGATGCCCAAGTTTGAGCTGGTGATAGACCCTCCACAGTACATCCAGGACCTCAACATGTGTGAACAGGCTACTGTGAGGGCCGGATATATCTTTGGGAAGCCAGTGACCGGGAAGATGACAGTGAACATGACAGTGAATGGAGTTGGGTACTACCGGCATGAGGTGGGCCATCCTGTGGTCAAGACCATGGAGATCAAAGGCTCAGCGACCTTCAGCCTGTGTGTCAAAGACATGATGCCCCTGGATGTGGCTGATCATTTCCGGGGCACGGTGAACATGTGGGTGTCAGTGACCAGCAAGGACGGAGGGCGACAAACCATGTTCGATGATTCAACCCCAGTTCACAAGCAGCTTATCGACATCAAATACTCAAAGGACACTCGCAAACAGTTCAAGCCTGGTCTGCCCTACAAGGGAAAGGTAGAGGTAACTTACCCTGACGGTAGCCCAGCAGATGGGGTGCGGGTGCGTGTGAAGGCGGAGCTGACCCCTAAGGACAACGTGTACACCAGCGAGCTGACTTCCAGGGATGGCCGGGCCACGTTTGAGATCCCCTCCATTCCCAACTCTGCCCAGTACGTCTGGCTGGAGACCAAGGTGACAGCCATAAATGGCCGTCCGGCTGGAGACCAGTACCTCCCCAGCTACCTGTCCATCAGCAGCTGGTACTCCCCCAGCAAGTGTCACATTCAGATCCAGAGCCTCAGCGCTCCTCTCAAGaTCGATCAAGAGGCTGAGGTCACTTTGAAGTCCACCTGTCCCTGTAACTTCACCCTCCACTATGAGATCGCCTCCAGAGGAAACATTGTCCAGTCCGGCCAGCAGCAGCCCAACGCTACAGCCCACAGAAGCAAGAGGGCAGCGGTCACCTTTGACAAGAACATCCACATCACCATGCCACCCAGTGGCTCTGGTCCGGAAGCCTCCTCCCCACAGGGTGAGACAGACAGCTGTATGGTGGTGCTGCGTTTCCCAGTGACCCACTCCATGGCGCCCCTCAGCCGCCTCCTGGTCTACTATGTGAAGGGGAATGGAGAGGGCGTCACTGACAGTCTACAGATCCCCGTACAGCCCAGCTTTGAGAACCAGgtgtctgtctctctatctaccaATGAGTCGATGCCAGGTGACCCTATCAGTATGCGTGTCACTGGTGAGAAGGGCTCCTGCGTGTGTGTCGCCACTGTGGACAAGAGCCTCTATCTCCTCAAGCCAGACTTCCAGCTCAGTCCAGACAAGGTGTTTAAAGAACTGGCAGACTTTGATGTGTCCGATGCCTTCGGAGTCCCCAAAGACGACGGGCACTTCTGGTGGCCGGGGCTGTCGTCTAGCCGACGGAGGCGTTCTTCAGTGTTCCCCTGGCACTGGGACATCACTAAAGATGCCCGCTTCGCCTTCACGGAGACTGGTCTCGTGGTGATGACTGACATGGTGACCCTGAACCACAGACAGACTGGAGGAATGTACACAGACGAGGCCGTTCCTGCCTTTCAGCCTCACACATCCACACTGGTGGCAGCCATGCACTCGCGCACTGTGCCCAGAGCCGAGAAGCGCAGGCGGACATTCTTCCCGGAGACGTGGGTGTGGCACTGCATCAATGTCAGTGATGTCACCGGCGAAGCTGAGTTACGATTGGACGTTCCAGACTCCATTACCACCTGGGTGACAGAGGCCATTGGCTTGTCAGAGGAGAAGGGGCTGGGCCTTGCCAAGAGGGCGGAGCTTCGTACCTTCAAGCCCTTCTTCGTAGACTTCACCCTCCCCTACGGTGTGATACGTGGGGAGCAGACCAAAGTACCGCTGACTGTTTACAACTACCTGTCTACCTGCGCAGAGGTCTATGTCAAAGTCACCATTCCCAAAGGCATCAAGTTTGTGGGTCACCCCGGGAAGCATCACCTGACCAGGAAGAAATGTGTGGCTCCTGGAGAGGCCACACCCACATCCATAGTGCTGTCCTTCACTGAGCTGGGCGCAGCTAACATCACAGCACGGGCCATTGCCTATAGTGAGCCGGGCTGCTGCTTAGATGGACTCCAGTCAACTAAAACAGGCAAAAACATAGATGACCCGGAGGACCGGAGGACCCCCATTGGCCTTGACTATGTCCGAAGGAGTGTCCTGGTGGAGCCAGAGGGCCTGCCCAGACAGTACACCTACAGTGTCTTCTTCTGCCCCAACGAGCGAATCCACATCTCCACACCCAACAAGTATGAGTACCAGTACGTGAAGAAGCCGGCCAAGATGACTCACTTTGAGGTGGCAGTGAAGACCCACAACGATGCCCATTTTGCCCTCTCACCCAGCCCCCACGACTGTGCTGAGATGCTGGAGATTGTACTGGGGGGCAGACAGAACACCCGCTCCTGGATCTCCCTGGGCAAGATGGGTGAACCAGTGGTCAGCTCCCCCACCCCGGGCATCCTCTCCTGGGATGAGTTCCGCAGCTTCTGGGTCAGCTGGAAGGGTGGCGTGGTgcagGTCGGACATGGTTTGCAGCCATCCAATGAGTCGGTGATCCTACAGTGGTCTGGCCCCCTCCCTGGCCAGGTGCGTCACATAGGTTTCTCCACGGGCTGGGGCTCGGTGGGTGAGTTTAAGATCTGGAGGAAGGAGGACACTGATGAGAACCACAACGAGGCCTTCACCCTGGGCGTCCCTCACAACGTGGTGCCTGGCTCTGAGACCGCCACTGCCTCCATGATAGGAGACGTGATGGGCCCCACCCTCAACAACCTGGACAAGCTGCTGCGGCTGCCCTTCGGCTGTGGAGAGCAGAACATGATCCACTTCGCCCCCAATGTTTTTGTCCTCAAGTACCTGCAGAAGACCAGGCAGCTCAGCCCTGAGGTGGAGGCTGAGGCCACAGACTACTTGCTGCAAGGGTACCAGAGACAGCTGACCTATAAGCGCCAGGATGGATCCTACAGTGCCTTTGGAGAGAGGGACTCCTCTGGAAGCATGTGgctgACAGCGTTTGTGTTGAAATCCTTTGCTCAGTCTCGTGGGTTCATCTTCATTGACCCAGAGGAGCTGCAAGCTGCCAAGGCCTGGCTCATCAACcaccagagagaggagggctcCTTCCCCGCCATGGGACGCATCCTCAACAAAGacttgcagGGAGGAATCCATGGAAAAATCTCATTGACAGCATACGTGGTTGCAGCCCTCCTGGAGACAGGAATAACTTCAGAGGAGGAGAAGACTGCTGTGGCCAAGGCAAAGGGTTTCCTGGAGAGTAACACATACACAGCTGATGACCCGTACACCACAGCCCTGTCTGCCTACGCCCTGGCCCTGTTACGAAGCCCCTACGCCACCCTCGCCCTTCGACGCCTCAACCACATGGCCATCACGCAAGACGGCTTTACCCACTGGAGTCTGACTGGTAGCACGGTGACAGATGAGGCCACCTTCATGGGCTTTAGTGACGGTCTTTCTCAGTCAGTGGTGTCAGCGGAGGTGGAGATGACAGCATACGGTCTGCTGACCTACACCCTGCTGGGTGACGTGGCCTCCGCCCTGCCTGTGGTCAAGTGGCTCTCCCAGCAGAGGAACGCCCTCGGGGGCTTCTCCTCCACACAGGACACGTGTGTAGCTCTTCAGGCGTTGTCTGAGTATGCCATCCTGTCGTACGTGGGAGGAGTTAACCTGaccatctctctggcctctacCAACCTGGACTTCCAGGAGAGCTTTGAACTGCACCGCGACAACCAAAAGATGCTGCAGAGCGCCTCGATCCCCAGTATTCCCACAGGGCTGTTTGTCAGTGCTAAAGGCGAGGGCTGCTGTCTAATGCAGATTGATGTATCCTACAACGTGCCTGACCCCTTGGTCAAGCCAGCCTTCCAGCTCAAGGTGGACCTGAAAGAACCCAGGCAGGAGCGGCACCCGCCAGCACCACCCTCCCCCCGCCACCCTAGTCCTCGCTCCCGTTCCCGTGCCGACAACCGCTCAGAGCTGAGCCGCAAACGCCGGGCGGCCACCGATGATGAAGACCCCGCAGCTCACCAAGACAACCTGGACTACCGCATCACCCTGGAAGCCTGCGCCAGgTGGCTCCACTCAGGTTCTTCCAACATGGCTGTCTTGGAGGTCCCTCTGCTCTCAGGTTTCCGTTCCGATGTGGAAAGCTTGGAGAGGCTGCTAATGGACAAGAGGGTTGGTCTGAAGAGGTACGAAGTGGACGGAAGGAAGGTCCTCTTCTACTTTGATGAGATCTCCAGTCAGTGTATGACGTGTGTGGCCTTCCAGGCTGTCAGGCAGTACATAGTGGGCAAGACAGCGCCTGTTCCAGTCAAGGTGTACGACTACTACGAACCAGcgtTTGAGGCCACCCGCTTTTACAACGTGAGCGAGAGCAGTCCACTGGCCCGCGAGCTGTGTGATGGCACCACGTGCAACGAGGTGGAGAGCTCAACCAACCAGTGGATAGGCTTTGTCCAGGGAAACCAATGTAACAAGGTGTTTGGCTGTCTGGAGGAGAAGTTTGAGCGTTGCACCTGCTACAGGGACTGTGGCTATGACGGGGAGCCGGTGTGTGGCTCAGACGGACATCTCTACCAGAACCAGTGTCAGATGGAGGTCTTCGCCTGCCGCAACGGGACCCGCATAGAACAAATGCCCATGTCCCAGTGTCCTCAGACGGAATCCACCACGGAGGACAGAGAGACTGCAACGAGCGAGGAACCAGGGCAAGCTCCTGCGCCTGTACACAAAGGTGAGGAAGAGCAGGGTTCCATGGCTGAGGTGTCCTACTACTCCTATGAGTATGACCCAGACTCAGAACCCTTCGCTGCGGAGGGGGAGGACCACTTTGAGCTGGCGGAAGGGGAGCAGGGGGGAGAGCAGGACAGTCCATCAGATAGCCAGCTACCCACACTGGACACAAAGGACACCCATGAGCGATGaaACTTCCCCTGACTGCATCACCAGCCAGATCTCCAAATTGTACATTGTTTGTTAATATGTTAGAgtgggtggagagagaaggaaaagagggGACTGCCCATCCTGAAAGGAAGAGATggtgggatgtgtgtgtgcgcgcatatgAATGACTAAAGGactacgtgtgtgcgtgtgtgtgcgtgtgtgtgtgtgttactatgCTAGTCCCCCTCCAgccctctgtatttctctcttttATATCTCCAGTCTCTTATTCAACAGTAGACACCATAGCGTCTTTGATATTCACTGTAGtgcctttacattgtttttcTGTAACCTCTAGATGGAGGTGTAATTACACCTGagttaaaacaaatgttttttgttgttttttctatCTGTGGTATTTATTTGTAGCTAGTGCTTTTTTGGTTTATTTGTTCCAATGCCTCCCCCTATTGCCTTTTTGTCCTGTCACCTACACCAATGTCTTCATTTAATTCATCAAAAATATGTCAAGATGTCATGGACCTATTTTTCTTATTCTGAGGAAGCCTTAGGTCGAACACTGAGGTGTACAGTGGATATCTTTATGTACTTATTTGGTGTGTTAACCTACTAGAGACGGAATTTCTGCAGCTTAAAACTGGAGGATTAAGATAAGCTCAATCCTTCTAAACAtttttaccaagctaccaatatCTCCACATAATAAGTCCTATTTGGGTATAGCTGTCACCTCACTGTTGAACAGACAGGGATTTGATTGTACAGTACATAAGctattttgttttgttaaattTTGATTATTGATATCCTAAAACAAGAATAAAGGTTTGGAACTATGGTACATTTACCATTTAAACCAATGTAACCCCACATCCATTTTCAATACAGCTGCTTTTGAAAAACAAGAGAATAAACTTtgtatacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483011 lncRNA upstream 59851 64124210 ~ 64124596 (+) True G426395
TU482995 lncRNA upstream 90572 64093636 ~ 64093875 (+) True G426380
TU482955 lncRNA upstream 97706 64038367 ~ 64086741 (+) True G426340
TU482898 lncRNA upstream 241264 63940530 ~ 63943183 (+) True G426287
TU482894 lncRNA upstream 251838 63929266 ~ 63932609 (+) True G426283
TU483083 lncRNA downstream 4856 64241944 ~ 64242197 (+) True G426453
TU483088 lncRNA downstream 13054 64250142 ~ 64250504 (+) True G426458
TU483095 lncRNA downstream 23414 64260502 ~ 64260741 (+) True G426465
TU483097 lncRNA downstream 24066 64261154 ~ 64262621 (+) True G426467
TU483122 lncRNA downstream 60354 64297442 ~ 64298014 (+) True LOC110524320
XM_036978059.1 mRNA upstream 1309 64177055 ~ 64183138 (+) False sac3d1
XM_036978060.1 mRNA upstream 1309 64177055 ~ 64183138 (+) False sac3d1
XM_036978061.1 mRNA upstream 1309 64178381 ~ 64183138 (+) False sac3d1
XM_021603848.2 mRNA upstream 1309 64179520 ~ 64183138 (+) False sac3d1
XM_021603842.2 mRNA upstream 26341 64146096 ~ 64158106 (+) False crlf1b
LOC110522985 mRNA downstream 6065 64243153 ~ 64244790 (+) False LOC110522985
XM_036978064.1 mRNA downstream 10409 64247497 ~ 64275958 (+) False shc2
XM_021603853.2 mRNA downstream 10410 64247498 ~ 64275958 (+) False shc2
XM_021603852.2 mRNA downstream 10413 64247501 ~ 64275956 (+) False shc2
XM_021603854.2 mRNA downstream 14966 64252054 ~ 64275958 (+) False shc2
TU483050 other upstream 5061 64177028 ~ 64179386 (+) False sac3d1
TU483051 other upstream 5061 64177028 ~ 64179386 (+) False sac3d1
TU483052 other upstream 5061 64177028 ~ 64179386 (+) True sac3d1
TU482675 other upstream 500208 63676414 ~ 63684239 (+) True nfil3-4
TU481721 other upstream 1132917 63045090 ~ 63051530 (+) True G425224
TU483060 other downstream 6514 64243602 ~ 64244529 (+) True LOC110522985
TU484247 other downstream 755013 64992101 ~ 64997138 (+) True G427476
TU484227 other downstream 787627 65024715 ~ 65028702 (+) False LOC110524338
TU484228 other downstream 787627 65024715 ~ 65028702 (+) False LOC110524338
TU484229 other downstream 787627 65024715 ~ 65028702 (+) False LOC110524338

Expression Profile