RNA id: XM_021603852.2


Basic Information

Item Value
RNA id XM_021603852.2
length 3570
RNA type mRNA
GC content 0.49
exon number 14
gene id shc2
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64247497 ~ 64275959 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACAACCAAGTGATGTAATTGGTTGTCGAGGAGttggcatgtgtgtatgtgtttttgtgtgtaacTTGTGTTAACTGTGGCTTGTTGCCATTGCGAGTTTGTTCATTCAGTCTATGACTTGCAGAAGGGTCTTATGCTCCTCAAGCCGTTATGCTCTCTCACATACTCTGAACTTCCTTTATTGCTTTGGAGTTTTAGGTTTCTGGGTTATTGTTCAAGTCAGGGCATCTTCACTCTGCTCTCCAAATGTCTGAGATATAGGCCATCAGCAGGCACAGATCTGCAGCAGGCTCAGCCAGTCCAGGCGGCCACAGCGCAGGGGCTACAGAGTGCACAGGGAGCCCCGGGGGCCACAGCGGATCCAGGACTGGGATGAACCGCAGGACAAGGGTGGAGGGAAtgtggctgggaggagaggaCTTCAACCAGAAGGGCAGCTTCATCCACAAGCCCTCCCAGGGCTGGCTGCACCCAGACAAGAAGATCACAGGCCCTGGGGCTTCCTACATAGTCAGGTACATGGGCTGCATTGAGGTGTTAAAGTCGATGCGATCGCTGGACTTCAACACTCGGACCCAGGTGACGAGGGAGGCCATCAACAGACTGTGTGAAGCTGTGCCTGGGGGTAAAGGGGCCTGGAGGAGGAAGAACATTAACAAGGCCCTGCAGTCCGTCATGGGGAAGAGTAACCTTCGCTTCGCTGGTATGAGCATCGCTGTCAACATCTCTATAGAGGGGCTCAGCTTGCTCATCCCCACCACACGACAGGTGATAGCACACCATCCCATGCAGTCCATCTCCTTTGCCTCTGGGGGAGACACGGACACGCCCGATTATGTTGCTTATGTGGCCAAAGATCCAGTCAATCAGAGAGCATGCCATATCCTGGAGTGTTGTGACGGTTTAGCTCAGAATGTCATCAGCACCATCGGGCAGGCCTTCGAACTGCAGTTTAAACAGTACCTCCACAGCCCTCCCAAAGCCATCCCAACCGTGGAAAGGAACATCAGGACAGAAGACTCGGCGTGGGGAGATGACGAGGACTCGTTGGAGCACGACTACTACAACAGCATCCCTGGGAAGGTGCCTCCTTTTGGGGGAGTGGTGGACTCAAGGCTGAAGCCTTGTACGGCCTTGCTGGGCCACATCCACAGCCAACCAGAGAGCAAGGCAGTGCAGATGGGTTCTCCGTCCAGGAGAGAGACAGCTTCCTGCCCTTCAGGTCAGCTGTGCTACGAGCTTCACTGGGATACTGAAAACAACGGCAGCTCAGGTCTGACATCAGATGGTTACCAGCGGGCAGACGGCCAGACTCCGGGGAGCAGGGACTATGAGGAGCACCTATATGTGAACACCCAGAGTCTGGAGGGATTGGAGCAGGGAGCAGAGGGCCACAGGGGGGCCAGGGGGCCAGACAGCCCCATGAAAGACATCTTTGACATGAGACCCTTTGAGGATGCTCTAAAGATGCACGAGGCTGGTGGTGTCGGTGGTAACGGTGGGGTGTGTGTTTTGAAGAACCAGTGGCCCAGCCCGCCCCGACGTCGTGCCCCTGTCGCCCCTACAGAGGAGCAGCTCCGGCGGGAGGCCTGGTACCACGGTCGTATGAGCCGCCGTGATGCTGAGAAACTGCTGGTCCGAGACGGGGACTTCCTGGTACGAGACAGTGCCACCAACCCAGGCCAGTATGTCCTGACAGGCATGCACTGTGGTCTGCCCAAACACCTGCTACTGGTGGACCCAGAGGGAGTGGTACGCACCAAAGACATGCTGTTTGAGAGCATTAGTCACCTGATCAGCTACCACCTGAAGAACGAGCTGCCCATCGTGGCGGCCGAGAGCGAGCTGCACCTCAAACAGGTGGTCCGGAGGAAACAGTGACCCAGCCAGCCACGGAGGGGATGACTTTCTGGAATGGAGTCAGAGGTGTGTCCATGTAAGCCCAAGGGAGGAAGATCTTCACTGCCATATCCATATCCCCAGAATCAGAGCTTTCACTGGGGTAGGAGGACACAGGCGACTCCCTCTGCCCTGGACACAGGAGCATTGCTACAGTACTTGGCTTCCTCCCGCAGTGCCCACAACTGTCCACCATTTCCGCCTGAACTCTCAGCATGCAGTCATTAAGCTAACAAACACCTGGATGCCTCAGAACGGGAGGTAACAGACCAGACAATCACAAGGATGGAATTCTAGGTCAGAGGTCACAGATGGTCCGAGGTCAGATGACATCATCACAGTGACAAACAGTAGTTGTTCCATAGGAAATCATTATTTTCGAGTGCATGATGATGTTGCAGCTCATACTGAATTTCAAACTGCTGTAGTCATGCACAGTCCCAGAATGATTTGGGTTCCCTGTGTCTTTCACTGAACAAATGTGAACATTCATAGACAAAAACATTGTAAATGATATGTAAGAAAATCCTGGCAGAAAAATATCACTCAATTGTTTCATCAGAAAGCAGTTCTTTGCTCCTCAGACATTGGGATGCTTTAATGGACTTTTATATACTGTTCATCTGCAGCAGTAGGAACTGCACCTTCATGAGTTTTATTCATATGTAGTCTCAGGACCAAATTCTGCAGGCTTTAAATATCTGATAGCATATGCTTTAGAGGTACAGTACTAACCAGACACAAACCTAAAAAATGTGTCTGTCCCTCTGTTCCCTCAAATCCACAAGACTACATAACACAAAATACATGGGCAGAACTCTGAATATCAATGTGATTGTTCAATTATAACCACATACTTGTCAACGTGTTTGTATCGGACAGTCGGATCGTCATTGAATACCTACCCGAGTTGTGTATTATCAAGCCTACTGTATGAAGAGAGCACTGGTCAGAGCCTGTACTCTCAGAAGGCAGACTACAGTACTACAAATGACTCAGTGTATATATGATGAACATCTCCTCAGTTCAGTGCCTTAATTGTCCATGTGTTTCATATCTTTCCTCTCAAATCGCTTGTACAGTGTCATACATTCTACATCTACCACCGAAGAAATACAGTAGTGTGGAATGTATGTATGCCCTGAGAGCAAATGACACATTTTCTTTCCATGCCAAACCATACTTTAATCAATGAATAGAGTGGACTGAAAGAAATCACCCATTTTTCTTGTGAAACTTTCTATAAGCTGCTGATTAATGGGGgggatactgtatactgtagcacCTCCCACAGTGTGTTCTGATTGGTTGTCCTATTATGTGCTTCCTGTTCTATTGTACGAGTCCTCCAATCAATAATCGTTGCAGGCATGGGCCCTAATGGTTTTGATCAGGATTCTGTGTTAAATTCTGTGTTAATGGCAACATGTTTGATCAATCGATAGGGGATCCTTTGGTCTCTGCTGTATCTTTGTCtcaaaggggaaagagagaggacatTGCTTTCTGTGATGTTAGTATACTTTATGCAACTTTTCTAAAAGGACCCCTTTGCTTCCTCAGGGCTTTCTGGTATCTACTCTTCTTTAAACTAAATGCATTTTTGCAATAAAATATGTCAAAATTAATGTTATTCAAATGTGCCTGATTTAGGGCTGACCTCAATTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483083 lncRNA upstream 5304 64241944 ~ 64242197 (+) True G426453
TU483070 lncRNA upstream 33448 64210170 ~ 64214053 (+) False G426441
TU483071 lncRNA upstream 33448 64210170 ~ 64214053 (+) True G426441
TU483069 lncRNA upstream 36526 64210170 ~ 64210975 (+) False G426441
TU483011 lncRNA upstream 122905 64124210 ~ 64124596 (+) True G426395
TU483122 lncRNA downstream 21486 64297442 ~ 64298014 (+) True LOC110524320
TU483204 lncRNA downstream 142263 64418219 ~ 64466996 (+) True G426564
TU483202 lncRNA downstream 171782 64447738 ~ 64494125 (+) True G426562
TU483745 lncRNA downstream 230261 64506217 ~ 64506421 (+) True G427024
TU483752 lncRNA downstream 233935 64509891 ~ 64510217 (+) True G427031
LOC110522985 mRNA upstream 2711 64243153 ~ 64244790 (+) False LOC110522985
XM_036978062.1 mRNA upstream 10413 64184447 ~ 64237088 (+) True LOC110524317
XM_036978060.1 mRNA upstream 64363 64177055 ~ 64183138 (+) False sac3d1
XM_021603856.2 mRNA downstream 21503 64297459 ~ 64325608 (+) False LOC110524320
XM_021603858.2 mRNA downstream 23634 64299590 ~ 64318014 (+) False LOC110524320
XM_036978071.1 mRNA downstream 23651 64299607 ~ 64325608 (+) False LOC110524320
XM_021603855.2 mRNA downstream 23655 64299611 ~ 64325608 (+) False LOC110524320
XM_036978070.1 mRNA downstream 24120 64300076 ~ 64325608 (+) False LOC110524320
TU483060 other upstream 2972 64243602 ~ 64244529 (+) True LOC110522985
TU483050 other upstream 68115 64177028 ~ 64179386 (+) False sac3d1
TU483051 other upstream 68115 64177028 ~ 64179386 (+) False sac3d1
TU483052 other upstream 68115 64177028 ~ 64179386 (+) True sac3d1
TU482675 other upstream 563262 63676414 ~ 63684239 (+) True nfil3-4
TU484247 other downstream 716145 64992101 ~ 64997138 (+) True G427476
TU484227 other downstream 748759 65024715 ~ 65028702 (+) False LOC110524338
TU484228 other downstream 748759 65024715 ~ 65028702 (+) False LOC110524338
TU484229 other downstream 748759 65024715 ~ 65028702 (+) False LOC110524338
TU484230 other downstream 748759 65024715 ~ 65028702 (+) True LOC110524338

Expression Profile