RNA id: XM_036978067.1


Basic Information

Item Value
RNA id XM_036978067.1
length 2173
RNA type mRNA
GC content 0.54
exon number 16
gene id LOC110522986
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64283744 ~ 64297376 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATAATGTATCAAATAATGTATCCAAGTCCCGAAGTCATCCAAAACTGCAACATTTAACCTAATACGTTACTGTGTTACAATTTGGGATATGCGGCAATACACTCTGTGACGGCAAACTGCAATGCAGTGAAACATGGTTAATCGCAATAAACCAGATTATTTCTAATAAACAATTACTTTTATTTGATATAAAAGTTGAATCGTTATCCTCAAGTGACAAATATGCGTTATCCCAATACTTACATAAAAAAATGCATACCACACTAAATCTGTCATGTACGCCTGCCAATCAAAATCCGATCCGGCTTCTGATGCGTAGGTGATTGGAGGATCTGGAAGAAAGGGCAGGTGCATTTGAAAGTCCAAAAGGGATGGACCAGTTGTGTACGTTGCGGTAGCAGGCAACTCATGGGACAGAAGAAACCCCTTCCAAAAAACGCCACTCTACCTCAGTTTCCCTTTCCTGGATGCAAAGTGCTGTAAACCAAAATGAAGAGCCTCAAGGCAAAGTTTAAGAAGAATGAGAGTCAGGACTGGAGTAAGAGCGATGAGAGACTACTGCAGGCTGTAGAGCAGAACGAGCCTGACAAAGTAGCTGCCCTGATTGTGAAGAAGGGACTTTGTCCCACCAAACTGGACGTGGAGGGAAAGTCAGCGTTCCATCTCTGTGCGTCTCGAGGTCGTCTGGACTGCTTGGAGGTCATCCTGGCTCACGGGCCAGACATTAACGTGACAGATGGTACAGGCTTCAGTGCCCTTCACCTAGCAGCAAAGAACTGCCAGCCTGAGTGCCTGAAGAGACTATTACAGGAGAGATTGTCTGTAGACTCCACAGACAGCTTTGGCCGGACAGCTTTGCATCACGCAGCTGTGAGCGGCTGCTTGTCCTGCACTGAGACTCTGTGGGACTTCAAGGCCAGTCTGGATGCCCAGGACGGGGATGGGGTGACCGCGCTGATCCTAGGAGCCCAGATGAGCAGAGTGGAGCTGTGTGCTTTCCTGTTGGACCGAGGAGCCAATCCCAACATACAGGACAGCCAGGGCAGGTCAGCCCTGATGCTGGCCTGTGAGAGTGACAGTGCAGAGACTGTGGAGGCGTTGCTAAGGGGAGGGGCTAACCCACATCTGGCCGACGCCCTCGGACACCACGCAGCCCACTACAGCGCAACTGCCGGCAACCAGCGCATTGCACAGCTGCTGCAAAACAGAGCTCCAGCCACTGAGGGCAATGGAGAAGAGCGacaaccccctcctccccctcctctaccaGGGGGTACGACCCCCCGTAAGAGGAAAGCCCCCCCTCCTCCACGCTCCCCTCCCCAGGGCTCCCCGCCATCTCCTGCCTCCCAGAGccctcctccccctgcctctcctgaGCCTCTGACCCAGAGACCCGCTCCCCTTCCTCAGTCCCCAGAGACGCAGCGCTCTGCTCAGGCTAACCTTatggaggatgaggaggtgtTTGAGGAGATCCGCAGACTGCGTCTGGAAAGGGGACGTCTGCTCCAGAAGATCAAAGGTCTGGAGCAGCAGCAGAACAGCGCCCACACTGCCCTGGAGGAGCTGACTCAGCTGAGAGAGCGTCTGCAGCAGGCGGAGGCAGAGCGGGACAGGCTGCAGACTGAGCTGGAGGAGCTGAAGGCAGGTCAGGTGATCGGTGCCAGTGACTCAGATGACGACATGCTGGACTTCCCAGGTGCTGAGAAGCTGCTCTCCAGGCGGTCGAGAGAGTCTCCCTCTGCTCTGGACGAGGGGGAGGCAGACTCCCTCAACCCCACCTCTCCTGGTGCTGCAGACTCCGACACTGTGGCTGAGCTACGCAGACAGCTGAAAGAGCTGGCCTTACAGAATCAGGAGCTGGTCCTGAAAGTGCAgATGCTGGAGATGTTTGAGAAAGATGACACTGACATGCAGACATCCGGCCCAGACTTTGTCCCCACGGCTCTGTATGACTCCCTGAGGAGGGAGTTTGAAGCTCTGCAGGAGCACTACTCCCAGGCCCAGGCTTCAGCTGAGGCCTCCAGCATGGCAGGGGAACAGGGGTAAGGATTACCACCCACACCATCTTACACCAGCCACCTTATAccttctggataagagcatctactaaatgactaaaatgtcacaTTCACACCACCCACTAGGGTTCGAGTTCAATTTATAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483438 lncRNA downstream 37500 64244735 ~ 64246244 (-) True LOC110524318
TU483543 lncRNA downstream 43558 64239903 ~ 64240186 (-) True G426865
TU483542 lncRNA downstream 45823 64237630 ~ 64237921 (-) True G426864
TU483529 lncRNA downstream 52704 64229108 ~ 64231040 (-) True G426851
TU483519 lncRNA downstream 77926 64201240 ~ 64205818 (-) True G426842
TU483592 lncRNA upstream 24210 64321586 ~ 64325607 (-) True G426909
TU483647 lncRNA upstream 80181 64377557 ~ 64380519 (-) True LOC110524322
TU483664 lncRNA upstream 110303 64407679 ~ 64408459 (-) False LOC110524323
TU483666 lncRNA upstream 111310 64408686 ~ 64409260 (-) True LOC110524323
TU483715 lncRNA upstream 172726 64470102 ~ 64474522 (-) True G427005
XM_036978065.1 mRNA downstream 358 64278614 ~ 64283386 (-) True LOC118964635
XM_021603850.2 mRNA downstream 37461 64243519 ~ 64246283 (-) False LOC110524318
LOC110522984 mRNA downstream 114370 64158413 ~ 64169374 (-) True LOC110522984
XM_036978056.1 mRNA downstream 139958 64132577 ~ 64143786 (-) True tmem59l
XM_036978055.1 mRNA downstream 221567 63932308 ~ 64062177 (-) True ssbp4
LOC110524322 mRNA upstream 81674 64379050 ~ 64382546 (-) False LOC110524322
XM_021603860.2 mRNA upstream 109853 64407229 ~ 64416757 (-) False LOC110524323
XM_036978072.1 mRNA upstream 109853 64407229 ~ 64416757 (-) False LOC110524323
trnaq-uug mRNA upstream 217375 64514751 ~ 64514822 (-) True trnaq-uug
XM_036978077.1 mRNA upstream 271108 64568484 ~ 64644073 (-) False LOC110524326
TU482381 other downstream 980350 63300924 ~ 63303394 (-) True G425810
TU482441 other downstream 1023275 63259648 ~ 63260469 (-) True LOC110524282
TU482212 other downstream 1383241 62894659 ~ 62900503 (-) True G425647
TU482168 other downstream 1433497 62850004 ~ 62850247 (-) True G425612
TU482117 other downstream 1475622 62803938 ~ 62808122 (-) True LOC110524277
TU484037 other upstream 269305 64566681 ~ 64568380 (-) True G427287
TU484034 other upstream 404498 64701874 ~ 64706025 (-) False LOC110524330
TU484039 other upstream 428551 64725927 ~ 64732972 (-) True LOC110524330
TU484689 other upstream 607669 64905045 ~ 64910998 (-) True LOC110524332
TU484709 other upstream 702332 64999708 ~ 65011598 (-) False G427902

Expression Profile