RNA id: TU483647


Basic Information

Item Value
RNA id TU483647
length 2941
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC110524322
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64377557 ~ 64382546 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGGTGACCACGCCCCTGAACTCTAATAACCAGGGCCGACCGACCTGGTGTCAGCGGTGCTGGTCAAGGCTGGTGCACTGCCGTCCCTCAGCAAATTCTGACTTGACAGCTAATTCACTGTagactggtcctagatctgtatgTGCTCTAGTAGTCTAGCCAACTCCTCTGACTATCGTTATCATGCAATGTCTGTCATAGTTGGCTAAAGCACATGCAGATCTTGGACCAGGCTAGAATCACACTGCATGGGTAACTGGCAATGCTGTGAGTGGGCATGGTACAGGCATGGACACTGGGGCTATTTCAGTATGCATTGGTGAAAGTATTGACTGAAGAGACCTTTGGTAGACACTCAGATGAGGTTTGTACTGATGAACTTGCTGTAAAGCAGGGGTTCCCACGTTGTTTTGGCCCGTGACccctttttaaaacttttttattgGGTCTATGagagtctattacaaatcagtctgacagtatTTCAATCTGAAGTGCCTGAAGTGgctctgtcactcagaaatgtATTCCAGCTTCTGCCTGCCAGCTGTAACACTTTGTGTAGGCTATCTGCCCCTCCCCCTTGaagcataggttactgtagcctactgacgatGTTACAAGAGTAATTCAGAATTTAGAGAGATATGTTTATTGGAGAAGAATGGattgactttttaaaatgttagttaaggatactatagttatcacaTTTCACAATGGATTCATTAACTACAAAAAAGGTAAGACGTGTTTTTAATTCTAgtgctgctctgcacacacaagctagctagctaacgcttgCAATGCTCCAACGTTAATAAACCAACTCGGAAGTTGAAAGACATTTAAAGTTCCTCCATAGAACCCGCTCCTCCGTATAGGTATAATTCTgggggcctaattcagataatgcatgtcattaCAAGATGCCCAGTGCTTCAAAGGAAgcttcctccattctctctcaccctcaaAATTGATGTTGCATCTTGTGTcctacactgtgtgtgtttgtctttcattGAGATTAAACCATGCTGTTAAAATGTGCTCTTAACAACTTTCCTGTACAGCTAAAATTGCTTACACGTTCCACAACAAGCTGCTTTATCCTCACTGATTGTTGAAGTAATTTAATGTCGAgctaaaggtaaaaaatatatacactacaaaatatgtggacatcccttcaaattggtggatttggctatttcagctacgCCCTTGCTGACCAGTGtagaaaatcgagcacacagctaaGCAATCTCTGTAGACAAACATTttcagtagaatggcccatactgaagagctaaGTGACTTTCAATATGGCAACGTCATAAGAttccatctttccaacaagtcagtttgtcaaatctgggtttggcagatgcaaGGATAACgctagtgccaactgtaaagattggtggaggaataatggaataatggtctggggctgtttttcatggttttggcTAGGCTCCTTGGATctaatgaagggaaatcttaacgctacaccatacaatgacattctagatgattctgtgcttccaactttgtggcaacagtttggggaaggccctttcctgtttcagtatgacaatgcccttgcggctgaatggaagcaagtcccgtagcaatgttccaacatctagtggaaagccttcccaaaagagtagaggctgttatagtagcaaaggggggagcaactccatattaatgcaaatgattttggaatgagatgtttggcgagcaggtgttcacatacttttggccgTGTAGTGTatatttcagaggtttaaaaaaGAACCGAAAGGAACCATATAAACGGGTACTTTTTGGGGTTTGAAActgttcagaactttatttttctGGTCGAAACATTGGAACAGAACGAAAACAAATTgattggaaaataattttggttccTAACTCGtggtttgaagtgactgaaatgcatcagaaaggtattggaaagttcagaagatcatcaggcaataatgttgatgatgttgatgatgtctGTGTAGAAAATAACATCATTGTTGAGGATGTTCTTTTCTCCCCCAATCTAATTTAGTGCCTGGCCTTGTCCACTCGGTTCTAACTGCTTATGGGTATTGTACAGGGAAACAGTACAGTACGTACGTACCTTTGTGTTCCTGTGAGTCTTATCTTTCAGATTttgtaggaagaaaacagaaaccactctgtttattacaaccgcATCTAGCGGCTACTCGAGGTTACTGATATAACCCCGGTTCTATGAACCAAGCGCGAATGCTTCATTAATAAGACTGCAAAGCGAAGGGATGCTAAGGATATACTCTTACCATAGCTCATCTAAAGCCACTATTTTGCAAAGACATTCAAATGACTCACATTGAACCTTTGGGCATGCCTTGTATATTAATTTACTTAATATTTCATAACTACGGAACACAATGAAAAATTTTCCCACAAGACATGTAATAGAGCATACTATAGCTTTATCAACTATCTATAGTGTGGGAAAAGTGGATTAATTGTAATAaactgtttgtatgtgtgcaaTAGAGGATGGGTAGTTTGCAAATGAAAGTAGGATCACTGTGTATTGcacatacagtgtatatatatatattttccaatGCACCTGCCTTTCTCTTTCTAGGACAGTTCAGTatatttattttcaatgaagACTAGGCCTTCCCGGTATGATGAACTGTGTACTAATCCATTGTGTTTACACCTTAAATGGTACAGTGAGTCAAATACTGATTTTGTAATGATTTGAAGTTTGCTGTCAGAGTAAAGAACATGTGTCAATGTTGGTTCTGGTTCCTCTCAGCAACATAGATACAAGTCATTCACGCTTCCACTAACCACTAGAGAGTTGTATTACAATTACCTTTACATCTTGTGTGGTGTCTAAATACCAATTGAATAAAAACT

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0038036 sphingosine-1-phosphate receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483592 lncRNA downstream 51950 64321586 ~ 64325607 (-) True G426909
TU483438 lncRNA downstream 131313 64244735 ~ 64246244 (-) True LOC110524318
TU483543 lncRNA downstream 137371 64239903 ~ 64240186 (-) True G426865
TU483542 lncRNA downstream 139636 64237630 ~ 64237921 (-) True G426864
TU483529 lncRNA downstream 146517 64229108 ~ 64231040 (-) True G426851
TU483664 lncRNA upstream 27160 64407679 ~ 64408459 (-) False LOC110524323
TU483666 lncRNA upstream 28167 64408686 ~ 64409260 (-) True LOC110524323
TU483715 lncRNA upstream 89583 64470102 ~ 64474522 (-) True G427005
TU483744 lncRNA upstream 123588 64504107 ~ 64504495 (-) True G427023
TU483751 lncRNA upstream 129026 64509545 ~ 64509764 (-) True G427030
XM_036978067.1 mRNA downstream 80181 64283744 ~ 64297376 (-) False LOC110522986
XM_036978066.1 mRNA downstream 82624 64283744 ~ 64294933 (-) False LOC110522986
XM_036978065.1 mRNA downstream 94171 64278614 ~ 64283386 (-) True LOC118964635
XM_021603850.2 mRNA downstream 131274 64243519 ~ 64246283 (-) False LOC110524318
LOC110522984 mRNA downstream 208183 64158413 ~ 64169374 (-) True LOC110522984
XM_021603860.2 mRNA upstream 26710 64407229 ~ 64416757 (-) False LOC110524323
XM_036978072.1 mRNA upstream 26710 64407229 ~ 64416757 (-) False LOC110524323
trnaq-uug mRNA upstream 134232 64514751 ~ 64514822 (-) True trnaq-uug
XM_036978077.1 mRNA upstream 187965 64568484 ~ 64644073 (-) False LOC110524326
XM_036978078.1 mRNA upstream 187965 64568484 ~ 64644073 (-) False LOC110524326
TU483573 other downstream 91198 64283968 ~ 64286359 (-) True LOC110522986
TU482381 other downstream 1074163 63300924 ~ 63303394 (-) True G425810
TU482441 other downstream 1117088 63259648 ~ 63260469 (-) True LOC110524282
TU482212 other downstream 1477054 62894659 ~ 62900503 (-) True G425647
TU482168 other downstream 1527310 62850004 ~ 62850247 (-) True G425612
TU484037 other upstream 186162 64566681 ~ 64568380 (-) True G427287
TU484034 other upstream 321355 64701874 ~ 64706025 (-) False LOC110524330
TU484039 other upstream 345408 64725927 ~ 64732972 (-) True LOC110524330
TU484689 other upstream 524526 64905045 ~ 64910998 (-) True LOC110524332
TU484709 other upstream 619189 64999708 ~ 65011598 (-) False G427902

Expression Profile