RNA id: XM_036978075.1


Basic Information

Item Value
RNA id XM_036978075.1
length 4589
RNA type mRNA
GC content 0.53
exon number 20
gene id tle2a
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64520297 ~ 64568404 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGGCTGGCTTGATCAACAGGAATAGATATATTCTCCCTTATCATTCTGTCTCAACAAATGTTTCTCTCTCAAGAAAACAACTCATAGCATTGAAGATCAGGCGAGGATCAgaaaaggagggagtgagaggaaagCAAAGCGAAAGGAGTAGGCTAGTATAGAGCAACCAACGAACGAGACAAAAGAGACTGCATTGAATGTGGTGTTTTCCGTCTCGGAAGCCACATAATATAGCCACATTTTCTCTTTATTCTAGACGGTGAGAATACACCGGGGAGGGGACCATTTACTTGAAGAGAAGGTGAAATTCTACTCTTTCGAAGTGCGTAGTCACGAGGACTCTAAACATCTAGTCGCGGACTGGGTGCATCTTTACTACATCGAGTGTTCTTTTTCTGTGGGTTGGAGATCGACCAGAACAAAGGGAGTCTTGAGCAAGGAGTGAGTGAGCGAGCCGAGCCCCATTAGTCATTACCGCCTCTGAAACCAGGCCAAATGCGTCTCTGAAAGCGACAATATACAGTTTTCTCAATTTCTGTCCGAATATTTTTGCCCATAAGAGGAAGAAGATTACAAAAACATCAATCGGCGCTCAAAATGTTTCCTCAAAATCGACCCCCGGCACCTCTCCAGCCACCCCCTGGGTCCTCGGCATCAGCAGCTGCAGCTTCGGGAACCCCCCAGGCCCTGAAGCTCACATACCCAGAGACCCTGGACCGCATCAAGGAGGAGTTCCAGTTCCTCCAGACCCAGTACCACAGCCTGAAGATGGAGTGTGAGAAACTGGCCACAGAGAAGACTGAGATCCAGAGACACTACGTCATGTATTACGAGATGTCCTACGGCCTTAATATTGAAATGCACAAACAGACAGAGATCGCCAAGCGGCTGAACGTGATCTGTGCCCAGCTCATCCCTTTCCTGTCACAGGAGCACCAACAACAGGTGGTCCAGGCCATGGAGCGCGCCAAGCAGcaaCAGCTGCAGGCGCAGCACCTCTCTCAGCACGTGGCCCAGGGCCTGCAGGGCCTGCAGGGCCTGCAAATGGGGCCACACCCTGGGGGCCTCCCTCACCCTGGCCTGGCGCTGGGCGGTGGGTCTGGCCTACTGGCCCTGTCCGGGGCCCTGGGGGCCCAGCTGGCTGCCAAAGAGGGCCATGAGAGGGCCCAcatggaggctgctgctgctgcagccgCCGCAGAGCACCACAGAGGCTGGCTGCGGGGACGCGGGGCGATGCTGTCCATCATGGACGTAGACCGCGAGGCTGGACCGAGCTCTATGTCCAATGGGGATAAGGGCCGTTCAGCAGACTACCTCAGCAATGGGAAGAAGAGGAAAGCTGACGAGAAGGAGTTCATGACAGATTATGGCAGCGATGCGGATAAGAGTGATGATAatttggtggtggatgagGACCCCTCATCCCCCCGCAGTGTGCACTCCTACTCGTCCAGAGAAAACGGCCTGGACAAATTGCCCCCCTCCCGTAAAGACGCCCTTCCCCAGGCCAGCCCCGCCTCCCTGGCCTCCTCCAGCAGCCAAGCCTCGCCCTCCCGCAGCAAGGACCGGGAGCCGCCGAGGGAGAAGTCCAGTACCCCAGGTATGAAGCCAGGCACCCCCCACAGTTCCCAGGACTCCTCCACCCCCGGCCCCAGTGCCCCCCCACAGTTCCGCCCCCTCCCTGGCAAACCTGGCGTTGACCCTCTGGCTCTAGGTCTGAGGAACCCTCTGGCGGTGCAGGGGGCGTACCCCCCCGGGGCGTTTGGCCTGCCCCCTCCAGGGGTGAATGGGGATCTGGCGGGGGCAGCAGCAGCCTACGGGGCTGGGCTCCACCTGGTCTCCCCCCAGATAAATGGCTCTGCAGCCGCAGCAGCAGCTGGATACGGACGATCAGCAGTGGTGGGTTATGAGTCTCCTCACCCCCACATGAGGGTCCCAGGGTTACCCGCCAGCCTGCAGTCTGCTGCCTCAGGAAAACCtgctTACTCTTTCCACGTCAGTGCGGATGGACAGATGCAGCCAGTTCCTTTCCCTCCGGATGCTCTGCTGGGCCCGGGCATCCCACGACATGCCCGTCAGATCCACACTCTGAACCACGGAGAGGTGGTGTGTGCCGTCACCATCAGCACCTCCACACGCCACGTCTACACCGGCGGCAAGGGCTGTGTCAAGGTGTGGGACATCAGCCAGCCTGGCAGCAAGAGTGCCATGGCCCAGCTCGACTGTCTGAATAGGGATAACTACATCCGTTCCTGCAAGCTCCTCCCTGATGGGCGGACCCTCATTGTTGGAGGCGAGGCCAGCACGTTGTCAATCTGGGACTTGGCCACGCCTACTCCCCGCATCAAGGCGGAGTTGACGTCTTCTGCCCCGGCCTGCTATGCTCTGGCCATCTCCCCTGACAACAAGGTCTGCTTCTCCTGCTGCAGTGACGGAAACATTGTAGTCTGGGACCTGCACAACCAGACCCTGGTCagGCAGTTCCAGGGTCACACTGACGGGGCCAGCTGTATTGACATCTCCAACGATGGGACCAAACTGTGGACGGGGGGGCTGGACAACACAGTACGCTGCTGGGACCTGAGAGAGGGACGACAGCTGCAGCAGCACGACTTCACCTCACAGATCTTCTCTCTGGGCTACTGTCCTACAGGAGAGTGGCTGGCAGTGGGCATGGAGAGCAGTAATGTAGAAGTGCTGCACGTCTCCAAACCAGACAAGTATCAGCTGCACCTCCACGAGAGCTGTGTGCTCTCACTCAAGTTCGCCTACTGTGGTAAATGGTTTGTGAGCACAGGCAAAGATAACCTCCTGAACGCATGGCGGACACCCTATGGATCAAGCATATTCCAGTCAAAGGAGTCGTCTTCGGTGCTCAGCTGTGACATCTCCCCCGATGACCAGTTCATTGTGACGGGCTCCGGTGACAAGAAGGCCACTGTGTACGAAGTTATCTACTGAGGAAGGAGCGCTCTGATTGGATAAAGTGGGGGCGAGGCTCCCTTGGTGCCCCAAGGACTGTAAAGAGAGTGGCGGGTGTCGTGGAGACCAGAGACACACGTtgtactttgttgttttgtttacgtTTGTAAAGGATTCAGATGAGGGCGAAGTCAGATCTCTGGAACTttgacctttaaaaaaaatgctcTGAGAAAAAGCTGGTAGTCTAGCGACACAATGCGGGATTCTTCCAAAGACCTGTTTTTTTTCCTCTCGTTTTGTTACCTTTTTTCCTGTTTTTAACAAAATGAAACCTCTGTAGTAAACAAAACATTTGCGaaaagaaaatattttttttttgccttttgaATTCTTGACGAGCAGTAggaccatggtgtgtgtgtgtgtgtgtgcgcgccgaGGGAGATAAGGGTTTGTAAGGGCTGTGTGGAGGGGGGTTAGATTCAGCAGCAATATGgttgtattatattatacatggTGAAAGGACATACCACTACCCAGGATATGAAACTATAATGTCCGTGTTCAAGGTATTCTGCGATTTCAGGGAAATGGCTACTTACTCCAAGTCGACAACGACATTAGTGTTTTCTATTGTATTTGTAGGGtacatagacaggtattttcacTACTACATTGTGACCTTTGAACtcggtgtatatatatatgaactgtaaataaAGCtctaaaggcaaaaaaaagaacGTAGGTTGGATTTGCTTAGAGCCAGGGAGAAAAATAAATTGTGCTACTATTGAAAAACGAATTGTATGATTTAATTTGTATGATATTTCCTTTTTAGTTTTGAGTATCTAATTTGAATTGCATGTTCCCAAGAGAAGCAGGGCTGTGACTAACCACATAGGACTGATCGGTCTGGGAAGATCTCTGCAGCCACACAGCTCAGTGGGAGTTTTGATATGGGTCTGTCTGCTGGTTTTTAATGTCATTGTCTCCCTGTGTCCCAAACTGGAAATGGAGCCGAGTAGGACTCGCCTCTAACTTCAGTGTCCTCTAAACCTCCCCCTCCCATATACACACCCGTGTACTCTCTATATCGTGTAGCTCtgctcagaacagcctcaaccaTGAGTAAGGCTCATATCCAAAGGTGGACATGGTCCAGGAGTGGGCAGTTCTGCCTGTGTACAGATGGATGATAACGCAATGTGTTCAAAGCTACTGTGTGACCCCTGTAAATCTGAATGGTCTGATGAGTGTACATGTTGAGAGATGTCATATAATAGCGATGTCATGGAGGCCCTCCAGGGCCATGTCTTATAACGAACTCTCATTATGATCTATGGGCAACGTCTACCTGGAGGAGTTGGTGATGATTGAGGTGGATGTTACCACATTCTCTAGAAGGGGAAGATGGGGAGCCAGTGCGTGGCCAAGGGAAGGACCTGTGGGGCAGGTGAAAGACCTCCGGGAGTGCTGTGGGTGGGATGGTCTGGGGGAGTGGGAGAGTTCATTTAGCATGGCCCTGTGCCCTGGGTGTGCAGAGTTCCATTGGTCCTTAAGTGAACTCTCCACCCACCTGAGGCTCCGGGCCATGCAAAATGAACTAGCCCATTGATGTGGGCGATGTAATGAGACTAATAAACTATTTTGTATGGTT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K04497 GRO, TLE; groucho

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483752 lncRNA upstream 10081 64509891 ~ 64510217 (+) True G427031
TU483745 lncRNA upstream 13877 64506217 ~ 64506421 (+) True G427024
TU483202 lncRNA upstream 26173 64447738 ~ 64494125 (+) True G426562
TU483204 lncRNA upstream 53302 64418219 ~ 64466996 (+) True G426564
TU483122 lncRNA upstream 222284 64297442 ~ 64298014 (+) True LOC110524320
TU483856 lncRNA downstream 93764 64662168 ~ 64668926 (+) True G427120
TU483857 lncRNA downstream 133505 64701909 ~ 64706624 (+) True G427121
TU483895 lncRNA downstream 140574 64708978 ~ 64709770 (+) True G427157
TU483859 lncRNA downstream 143274 64711678 ~ 64722880 (+) True G427123
TU484263 lncRNA downstream 358508 64926912 ~ 64927789 (+) True G427490
XM_021603864.2 mRNA upstream 26157 64460935 ~ 64494141 (+) False LOC110524325
XM_036978073.1 mRNA upstream 26157 64460935 ~ 64494141 (+) False LOC110524325
XM_021603865.2 mRNA upstream 26157 64460937 ~ 64494141 (+) False LOC110524325
XM_021603863.2 mRNA upstream 26157 64460940 ~ 64494141 (+) True LOC110524325
XM_021603861.2 mRNA upstream 71692 64416798 ~ 64448606 (+) True LOC110524324
XM_036978081.1 mRNA downstream 242837 64811241 ~ 64842855 (+) False LOC110524331
XM_036978082.1 mRNA downstream 242838 64811242 ~ 64842855 (+) False LOC110524331
XM_036978083.1 mRNA downstream 262035 64830439 ~ 64842855 (+) False LOC110524331
XM_036978084.1 mRNA downstream 262036 64830440 ~ 64842855 (+) True LOC110524331
XM_021603892.2 mRNA downstream 431262 64999666 ~ 65009427 (+) False LOC110524337
TU483060 other upstream 275769 64243602 ~ 64244529 (+) True LOC110522985
TU483050 other upstream 340912 64177028 ~ 64179386 (+) False sac3d1
TU483051 other upstream 340912 64177028 ~ 64179386 (+) False sac3d1
TU483052 other upstream 340912 64177028 ~ 64179386 (+) True sac3d1
TU482675 other upstream 836059 63676414 ~ 63684239 (+) True nfil3-4
TU484247 other downstream 423697 64992101 ~ 64997138 (+) True G427476
TU484227 other downstream 456311 65024715 ~ 65028702 (+) False LOC110524338
TU484228 other downstream 456311 65024715 ~ 65028702 (+) False LOC110524338
TU484229 other downstream 456311 65024715 ~ 65028702 (+) False LOC110524338
TU484230 other downstream 456311 65024715 ~ 65028702 (+) True LOC110524338

Expression Profile